Reference on EC 2.7.7.6 - DNA-directed RNA polymerase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Weaver, R.F.; Blatti, S.P.; Rutter, W.J.
Molecular structures of DNA-dependent RNA polymerases (II) from calf thymus and rat liver
Proc. Natl. Acad. Sci. USA
68
2994-2999
1971
Bos taurus, Rattus norvegicus
Jacob, S.T.
Mammalian RNA polymerases
Prog. Nucleic Acid Res. Mol. Biol.
13
93-126
1973
Bos taurus, Homo sapiens, Rattus norvegicus
Borbely, G.; Schneider, G.J.
Cyanobacterial DNA-dependent RNA polymerase
Methods Enzymol.
167
592-599
1988
Anabaena cylindrica, Anabaena sp., Synechococcus elongatus PCC 7942 = FACHB-805, Microchaete diplosiphon
-
Krueger, R.C.
RNA elongation by RNA polymerase II is not inhibited by N-ethylmaleimide or iodoacetamide
Arch. Biochem. Biophys.
278
475-477
1990
Oryctolagus cuniculus
Edwards, A.M.; Darst, S.A.; Feaver, W.J.; Thompson, N.E.; Burgess, R.R.; Kornberg, R.D.
Purification and lipid-layer crystallization of yeast RNA polymerase II
Proc. Natl. Acad. Sci. USA
87
2122-2126
1990
Saccharomyces cerevisiae
Steinberg, T.H.; Mathews, D.E.; Durbin, R.D.; Burgess, R.R.
Tagetitoxin: a new inhibitor of eukaryotic transcription by RNA polymerase III
J. Biol. Chem.
265
499-505
1990
Bombyx mori, Bos taurus, Saccharomyces cerevisiae, Homo sapiens, Xenopus laevis
Deora, R.; Mira, T.K.
Purification and characterization of DNA dependent RNA polymerase from Staphylococcus aureus
Biochem. Biophys. Res. Commun.
208
610-616
1995
Staphylococcus aureus
Rajasekhar, V.K.; Sun, E.; Meeker, R.; Wu, B.W.; Tewari, K.T.
Highly purified pea chloroplast RNA polymerase transcribes both rRNA and mRNA genes
Eur. J. Biochem.
195
215-228
1991
Pisum sativum
Pich, A.; Baghl, H.
Purification and characterization of the DNA-dependent RNA polymerase from Clostridium acetobutylicum
J. Bacteriol.
173
2120-2124
1991
Clostridium acetobutylicum
Kck, J.; Cornelissen, A.W.C.A.
Characterization of the RNA polymerases of Crithidia fasciculata
Mol. Microbiol.
5
835-842
1991
Crithidia fasciculata
de Mercoyrol, L.; Corda, Y.; Job, C.; Job, D.
Accuracy of wheat-germ RNA polymerase II. General enzymatic properties and effect of template conformational transition from right-handed B-DNA to left-handed Z-DNA
Eur. J. Biochem.
206
49-58
1992
Triticum aestivum
Patra, D.; Lafer, E.M.; Sousa, R.
Isolation and characterization of mutant bacteriophage T7 RNA polymerases
J. Mol. Biol.
224
307-318
1992
Escherichia phage T7
Wnendt, S.; Hartmann, R.K.; Ulbrich, N.; Erdmann, V.A.
Isolation and physical properties of the DNA-directed RNA polymerase from Thermus thermophilus HB8
Eur. J. Biochem.
191
467-472
1990
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
Heidelbach, M.; Skladny, H.; Schairer, H.U.
Purification of the DNA-dependent RNA polymerase from the myxobacterium Stigmatella aurantiaca
J. Bacteriol.
174
2733-2735
1992
Stigmatella aurantiaca
Zalenskaya, K.; Lee, J.; Gujuluva, C.N.; Shin, Y.K.; Slutsky, M.; Goldfarb, A.
Recombinant RNA polymerase: inducible overexpression, purification and assembly of Escherichia coli rpo gene products
Gene
89
7-12
1990
Escherichia coli
Fujita, M.; Amemura, A.
Purification and characterization of a DNA-dependent RNA polymerase from Pseudomonas putida
Biosci. Biotechnol. Biochem.
56
1797-1800
1992
Pseudomonas putida, Pseudomonas putida PpY101
Ding, H.F.; Winkler, H.H.
Purification and partial characterization of the DNA-dependent RNA polymerase from Rickettsia prowazekii
J. Bacteriol.
172
5624-5630
1990
Rickettsia prowazekii
Azuma, Y.; Yamagishi, M.; Ishihama, A.
Subunits of the Schizosaccharomyces pombe RNA polymerase II: enzyme purification and structure of the subunit 3 gene
Nucleic Acids Res.
21
3749-3754
1993
Schizosaccharomyces pombe
Palm, P.; Schleper, C.; Arnold-Ammer, I.; Holz, I.; Meier, T.; Lottspeich, F.; Zillig, W.
The DNA-dependent RNA-polymerase of Thermotoga maritima; characterisation of the enzyme and the DNA-sequence of the genes for the large subunits
Nucleic Acids Res.
21
4904-4908
1993
Thermotoga maritima
Chung, Y.J.; Sousa, R.; Rose, J.P.; Lafer, E.; Wang, B.C.
Crystallographic structure of phage T7 RNA polymerase at resolution of 4.0 A
Struct. Funct. Nucleic Acids Proteins (Wu, F. Y. -H. , Wu, C. -W. , Eds. ) Raven
New York
55-59
1990
Escherichia phage T7
-
Sethi, V.S.
Structure and function of DNA-dependent RNA-polymerase
Prog. Biophys. Mol. Biol.
23
67-101
1971
Escherichia coli
Boyer, A.S.; Hallick, R.B.
Purification and characterization of a soluble DNA-dependent chloroplast RNA polymerase from Pisum sativum
Plant Sci.
137
13-32
1998
Pisum sativum
-
Kaarbo, M.; Crane, D.I.; Murrell, W.G.
Isolation and characterisation of a chick cDNA encoding the RNA polymerase common subunit RPB6
DNA Seq.
11
155-162
2000
Gallus gallus
Sadhukhan, P.K.; Cgakraborty, A.K.; Dasgupta, A.; Majumder, H.K.
Chromatographic separation of DNA dependent RNA polymerases and molecular properties of RNA polymerase II from a Leishmania spp
Mol. Cell. Biochem.
171
105-114
1997
Leishmania sp., Leishmania sp. UR6
Huang, Y.; Beaudry, A.; McSwiggen, J.; Sousa, R.
Determinants of ribose specificity in RNA polymerization: effects of Mn2+ and deoxynucleoside monophosphate incorporation into transcripts
Biochemistry
36
13718-13728
1997
Escherichia phage T7
Mller, M.; Schnitzler, P.; Koonin, E.V.; Darai, G.
Identification and properties of the largest subunit of the DNA-dependent RNA polymerase of fish lymphocystis disease virus: dramatic difference in the domain organization in the family Iridoviridae
J. Gen. Virol.
76
1099-1107
1995
Lymphocystis disease virus 1 (Q83066), Lymphocystis disease virus 1
Klenk, H.P.; Meier, T.D.; Durovic, P.; Schwass, V.; Lottspeich, F.; Dennis, P.P.; Zillig, W.
RNA Polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely termophilic bacteria
J. Mol. Evol.
48
528-541
1999
Aquifex pyrophilus
Schultz, P.; Celia, H.; Riva, M.; Darst, S.A.; Colin, P.; Kornberg, R.D.; Sentenac, A.; Oudet, P.
Structural study of the yeast RNA polymerase A electron microscopy of lipid-bound molecules and two-dimensional crystals
J. Mol. Biol.
216
353-362
1992
Saccharomyces cerevisiae
Gnatt, A.L.; Cramer, P.; Fu, J.; Bushnell, D.A.; Kornberg, R.D.
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 A resolution
Science
292
1876-1881
2001
Saccharomyces cerevisiae
Xue, Y.; Hogan, B.P.; Erie, D.A.
Purification and initial characterization of RNA polymerase from Thermus thermophilus strain HB8
Biochemistry
39
14356-14362
2000
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
Schultz, P.; Celia, H.; Riva, M.; Sentenac, A.; Oudet, P.
Three-dimensional model of yeast RNA polymerase I determined by electron microscopy of two-dimensional crystals
EMBO J.
12
2601-2607
1993
Saccharomyces cerevisiae
Gnatt, A.; Fu, J.; Kornberg, R.D.
Formation and crystallization of yeast RNA polymerase II elongation complexes
J. Biol. Chem.
272
30799-30805
1997
Saccharomyces cerevisiae
Mohamed, M.R.; Niles, E.G.
Interaction between nucleoside triphosphate phosphohydrolase I and the H4L subunit of the viral RNA polymerase is required for vaccinia virus early gene transcript release
J. Biol. Chem.
275
25798-25804
2000
Vaccinia virus, Vaccinia virus WR
Tornaletti, S.; Patrick, S.M.; Turchi, J.J.; Hanawalt, P.C.
Behavior of T7 RNA polymerase and Mammalian RNA polymerase II at site-specific cisplatin adducts in the template DNA
J. Biol. Chem.
278
35791-35797
2003
Escherichia phage T7, Rattus norvegicus
Imburgio, D.; Anikin, M.; McAllister, W.T.
Effects of substitutions in a conserved DX2GR sequence motif, found in many DNA-dependent nucleotide polymerases, on transcription by T7 RNA polymerase
J. Mol. Biol.
319
37-51
2002
Escherichia phage T7, Escherichia coli
Woody, A.Y.M.; Osumi-Davis, P.A.; Hiremath, M.M.; Woody, R.W.
Pre-steady-state and steady-state kinetic studies on transcription initiation catalyzed by T7 RNA polymerase and its active-site mutants K631R and Y639F
Biochemistry
37
15958-15964
1998
Escherichia phage T7
Callaci, S.; Heyduk, T.
Conformation and DNA binding properties of a single-stranded DNA binding region of sigma 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme
Biochemistry
37
3312-3320
1998
Escherichia coli
Kuhlman, P.; Duff, H.L.; Galant, A.
A fluorescence-based assay for multisubunit DNA-dependent RNA polymerases
Anal. Biochem.
324
183-190
2004
Escherichia coli
Mizushina, Y.; Saito, A.; Tanaka, A.; Nakajima, N.; Kuriyama, I.; Takemura, M.; Takeuchi, T.; Sugawara, F.; Yoshida, H.
Structural analysis of catechin derivatives as mammalian DNA polymerase inhibitors
Biochem. Biophys. Res. Commun.
333
101-109
2005
Escherichia phage T7
Allan, B.; Kropinski, A.M.
DNA-dependent RNA polymerase from Pseudomonas aeruginosa
Biochem. Cell Biol.
65
776-782
1987
Pseudomonas aeruginosa
Zaher, H.S.; Unrau, P.J.
T7 RNA polymerase mediates fast promoter-independent extension of unstable nucleic acid complexes
Biochemistry
43
7873-7880
2004
Escherichia phage T7
Tan, X.X.; Chen, Y.
A novel genomic approach identifies bacterial DNA-dependent RNA polymerase as the target of an antibacterial oligodeoxynucleotide, RBL1
Biochemistry
44
6708-6714
2005
Escherichia coli
Temiakov, D.; Patlan, V.; Anikin, M.; McAllister, W.T.; Yokoyama, S.; Vassylyev, D.G.
Structural basis for substrate selection by T7 RNA polymerase
Cell
116
381-391
2004
Escherichia phage T7 (P00573)
Vaught, J.D.; Dewey, T.; Eaton, B.E.
T7 RNA polymerase transcription with 5-position modified UTP derivatives
J. Am. Chem. Soc.
126
11231-11237
2004
Escherichia phage T7
King, R.A.; Markov, D.; Sen, R.; Severinov, K.; Weisberg, R.A.
A conserved zinc binding domain in the largest subunit of DNA-dependent RNA polymerase modulates intrinsic transcription termination and antitermination but does not stabilize the elongation complex
J. Mol. Biol.
342
1143-1154
2004
Escherichia coli
Mizushina, Y.; Akihisa, T.; Ukiya, M.; Hamasaki, Y.; Murakami-Nakai, C.; Kuriyama, I.; Takeuchi, T.; Sugawara, F.; Yoshida, H.
Structural analysis of isosteviol and related compounds as DNA polymerase and DNA topoisomerase inhibitors
Life Sci.
77
2127-2140
2005
Escherichia phage T7
Kettenberger, H.; Armache, K.J.; Cramer, P.
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
Mol. Cell
16
955-965
2004
Saccharomyces cerevisiae
Schneider, D.A.; Nomura, M.
RNA polymerase I remains intact without subunit exchange through multiple rounds of transcription in Saccharomyces cerevisiae
Proc. Natl. Acad. Sci. USA
101
15112-15117
2004
Saccharomyces cerevisiae
Skoblov, A.Y.; Sosunov, V.V.; Victorova, L.S.; Skoblov, Y.S.; Kukhanova, M.K.
Substrate properties of dinucleoside 5',5''-oligophosphates in the reactions catalyzed by HIV reverse transcriptase, E. coli DNA polymerase I, and E. coli RNA polymerase
Russ. J. Bioorg. Chem.
31
48-57
2005
Escherichia coli
-
Miller, M.L.; Antes, T.J.; Qian, F.; Miller, D.L.
Identification of a putative mitochondrial RNA polymerase from Physarum polycephalum: characterization, expression, purification, and transcription in vitro
Curr. Genet.
49
259-271
2006
Physarum polycephalum (Q2XSM7), Physarum polycephalum
Chopra, I.
Bacterial RNA polymerase: a promising target for the discovery of new antimicrobial agents
Curr. Opin. Investig. Drugs
8
600-607
2007
Escherichia coli
Anand, V.S.; Patel, S.S.
Transient state kinetics of transcription elongation by T7 RNA polymerase
J. Biol. Chem.
281
35677-35685
2006
Escherichia phage T7
Kennedy, W.P.; Momand, J.R.; Yin, Y.W.
Mechanism for de novo RNA synthesis and initiating nucleotide specificity by T7 RNA polymerase
J. Mol. Biol.
370
256-268
2007
Escherichia phage T7 (P00573), Escherichia phage T7
Devaux, S.; Kelly, S.; Lecordier, L.; Wickstead, B.; Perez-Morga, D.; Pays, E.; Vanhamme, L.; Gull, K.
Diversification of function by different isoforms of conventionally shared RNA polymerase subunits
Mol. Biol. Cell
18
1293-1301
2007
Trypanosoma brucei
Zenkin, N.; Naryshkina, T.; Kuznedelov, K.; Severinov, K.
The mechanism of DNA replication primer synthesis by RNA polymerase
Nature
439
617-620
2006
Escherichia coli
Proshkina, G.M.; Shematorova, E.K.; Proshkin, S.A.; Zaros, C.; Thuriaux, P.; Shpakovski, G.V.
Ancient origin, functional conservation and fast evolution of DNA-dependent RNA polymerase III
Nucleic Acids Res.
34
3615-3624
2006
Schizosaccharomyces pombe
Castro, C.; Smidansky, E.; Maksimchuk, K.R.; Arnold, J.J.; Korneeva, V.S.; Goette, M.; Konigsberg, W.; Cameron, C.E.
Two proton transfers in the transition state for nucleotidyl transfer catalyzed by RNA- and DNA-dependent RNA and DNA polymerases
Proc. Natl. Acad. Sci. USA
104
4267-4272
2007
Escherichia phage T7
Greco-Stewart, V.S.; Miron, P.; Abrahem, A.; Pelchat, M.
The human RNA polymerase II interacts with the terminal stem-loop regions of the hepatitis delta virus RNA genome
Virology
357
68-78
2007
Homo sapiens
Crouch, E.A.; Cox, L.T.; Morales, K.G.; Passarelli, A.L.
Inter-subunit interactions of the Autographa californica M nucleopolyhedrovirus RNA polymerase
Virology
367
265-274
2007
Autographa californica M nucleopolyhedrovirus
Zillig, W.; Stetter, K.O.; Janekovic, D.
DNA-dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius
Eur. J. Biochem.
96
597-604
1979
Sulfolobus acidocaldarius
Grachev, M.A.; Mustaev, A.A.; Zaychikov, E.F.; Lindner, A.J.; Hartmann, G.R.
Localisation of the binding site for the initiating substrate on the RNA polymerase from Sulfolobus acidocaldarius
FEBS Lett.
250
317-322
1989
Sulfolobus acidocaldarius
Carmona, M.; de Lorenzo, V.; Bertoni, G.
Recruitment of RNA polymerase is a rate-limiting step for the activation of the sigma(54) promoter Pu of Pseudomonas putida
J. Biol. Chem.
274
33790-33794
1999
Pseudomonas putida
Phler, G.; Lottspeich, F.; Zillig, W.
Organization and nucleotide sequence of the genes encoding the large subunits A, B and C of the DNA-dependent RNA polymerase of the archaebacterium Sulfolobus acidocaldarius
Nucleic Acids Res.
17
4517-4534
1989
Sulfolobus acidocaldarius
Langer, D.; Zillig, W.
Putative tfIIs gene of Sulfolobus acidocaldarius encoding an archaeal transcription elongation factor is situated directly downstream of the gene for a small subunit of DNA-dependent RNA polymerase
Nucleic Acids Res.
21
2251
1993
Sulfolobus acidocaldarius (P46217), Sulfolobus acidocaldarius (Q07271), Sulfolobus acidocaldarius
Ferrari, R.; Dieci, G.
The transcription reinitiation properties of RNA polymerase III in the absence of transcription factors
Cell. Mol. Biol. Lett.
13
112-118
2008
Saccharomyces cerevisiae
Lo, H.; Chang, T.; Yam, P.; Marcovecchio, P.M.; Li, S.; Zaia, J.A.; Yee, J.
Inhibition of HIV-1 replication with designed miRNAs expressed from RNA polymerase II promoters
Gene Ther.
14
1503-1512
2007
Homo sapiens
Martinez-Calvillo, S.; Saxena, A.; Green, A.; Leland, A.; Myler, P.J.
Characterization of the RNA polymerase II and III complexes in Leishmania major
Int. J. Parasitol.
37
491-502
2007
Leishmania major, Leishmania major MHOM/IL/81/Friedlin
Jovcic, B.; Bertani, I.; Venturi, V.; Topisirovic, L.; Kojic, M.
5' Untranslated region of the Pseudomonas putida WCS358 stationary phase sigma factor rpoS mRNA is involved in RpoS translational regulation
J. Microbiol.
46
56-61
2008
Pseudomonas putida, Pseudomonas putida WCS358
Tiburzi, F.; Imperi, F.; Visca, P.
Intracellular levels and activity of PvdS, the major iron starvation sigma factor of Pseudomonas aeruginosa
Mol. Microbiol.
67
213-227
2008
Pseudomonas aeruginosa
Yuan, A.H.; Gregory, B.D.; Sharp, J.S.; McCleary, K.D.; Dove, S.L.; Hochschild, A.
Rsd family proteins make simultaneous interactions with regions 2 and 4 of the primary sigma factor
Mol. Microbiol.
70
1136-1151
2008
Pseudomonas aeruginosa
Brueckner, F.; Cramer, P.
Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation
Nat. Struct. Mol. Biol.
15
811-818
2008
Saccharomyces cerevisiae
Kruhlak, M.; Crouch, E.E.; Orlov, M.; Montano, C.; Gorski, S.A.; Nussenzweig, A.; Misteli, T.; Phair, R.D.; Casellas, R.
The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks
Nature
447
730-734
2007
Mus musculus
Hirata, A.; Klein, B.J.; Murakami, K.S.
The X-ray crystal structure of RNA polymerase from Archaea
Nature
451
851-854
2008
Saccharolobus solfataricus (Q980R2 and P58192 and Q980R1 and P95989 and Q980A3 and Q9UXD9 and Q980L5 and Q980Q9 and Q97ZJ9 and Q980K0 and Q980Z8 and Q97ZX7 and Q980B8), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q980R2 and P58192 and Q980R1 and P95989 and Q980A3 and Q9UXD9 and Q980L5 and Q980Q9 and Q97ZJ9 and Q980K0 and Q980Z8 and Q97ZX7 and Q980B8)
Reiner, R.; Krasnov-Yoeli, N.; Dehtiar, Y.; Jarrous, N.
Function and assembly of a chromatin-associated RNase P that is required for efficient transcription by RNA polymerase I
PLoS ONE
3
e4072
2008
Homo sapiens
Brueckner, F.; Armache, K.J.; Cheung, A.; Damsma, G.E.; Kettenberger, H.; Lehmann, E.; Sydow, J.; Cramer, P.
Structure-function studies of the RNA polymerase II elongation complex
Acta Crystallogr. Sect. D
65
112-120
2009
Saccharomyces cerevisiae
Drygin, D.; Rice, W.G.; Grummt, I.
The RNA polymerase I transcription machinery: an emerging target for the treatment of cancer
Annu. Rev. Pharmacol. Toxicol.
50
131-156
2010
Homo sapiens, Mus musculus
Klein-Marcuschamer, D.; Santos, C.N.; Yu, H.; Stephanopoulos, G.
Mutagenesis of the bacterial RNA polymerase alpha subunit for improvement of complex phenotypes
Appl. Environ. Microbiol.
75
2705-2711
2009
Escherichia coli K-12
Dieci, G.; Ruotolo, R.; Braglia, P.; Carles, C.; Carpentieri, A.; Amoresano, A.; Ottonello, S.
Positive modulation of RNA polymerase III transcription by ribosomal proteins
Biochem. Biophys. Res. Commun.
379
489-493
2009
Saccharomyces cerevisiae
Grohmann, D.; Hirtreiter, A.; Werner, F.
Molecular mechanisms of archaeal RNA polymerase
Biochem. Soc. Trans.
37
12-17
2009
Saccharomyces cerevisiae, Saccharolobus solfataricus, Thermus aquaticus
Gralla, J.D.; Huo, Y.X.
Remodeling and activation of Escherichia coli RNA polymerase by osmolytes
Biochemistry
47
13189-13196
2008
Escherichia coli
Menche, D.; Li, P.; Irschik, H.
Design, synthesis and biological evaluation of simplified analogues of the RNA polymerase inhibitor etnangien
Bioorg. Med. Chem. Lett.
20
939-941
2009
Corynebacterium glutamicum, Saccharomyces cerevisiae, Escherichia coli, Micrococcus luteus, Staphylococcus aureus, Mycolicibacterium phlei, Gordonia rubripertincta
Kawano, H.; Takahashi, H.; Abe, F.; Kato, C.; Horikoshi, K.
Identification and characterization of two alternative sigma factors of RNA polymerase in the deep-sea piezophilic bacterium Shewanella violacea, strain DSS12
Biosci. Biotechnol. Biochem.
73
200-202
2009
Shewanella violacea, Shewanella violacea DSS12
Zenkin, N.; Severinov, K.
RNA polymerase - The third class of primases
Cell. Mol. Life Sci.
65
2280-2288
2008
Inovirus M13
Sousa, R.
Tie me up, tie me down: inhibiting RNA polymerase
Cell
135
205-207
2008
Saccharomyces cerevisiae, Thermus thermophilus
Sologub, M.; Litonin, D.; Anikin, M.; Mustaev, A.; Temiakov, D.
TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase
Cell
139
934-944
2009
Homo sapiens
Svetlov, V.; Nudler, E.
Macromolecular micromovements: how RNA polymerase translocates
Curr. Opin. Struct. Biol.
19
701-707
2009
Saccharomyces cerevisiae, Escherichia coli, Thermus thermophilus, Saccharolobus solfataricus, Thermus aquaticus
Hirata, A.; Murakami, K.S.
Archaeal RNA polymerase
Curr. Opin. Struct. Biol.
19
724-731
2009
Archaeoglobus fulgidus, Homo sapiens, Methanocaldococcus jannaschii, Pyrococcus furiosus, Saccharolobus shibatae, Saccharolobus solfataricus, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Thermococcus kodakarensis
Paschal, B.M.; McReynolds, L.A.; Noren, C.J.; Nichols, N.M.
RNA polymerases
Curr. Protoc. Mol. Biol.
Chapter 3
Unit3.8
2008
Enterobacteria phage T3, Escherichia phage T7, Escherichia coli, Zindervirus SP6
Ardehali, M.B.; Yao, J.; Adelman, K.; Fuda, N.J.; Petesch, S.J.; Webb, W.W.; Lis, J.T.
Spt6 enhances the elongation rate of RNA polymerase II in vivo
EMBO J.
28
1067-1077
2009
Drosophila melanogaster
Ahn, S.H.; Keogh, M.C.; Buratowski, S.
Ctk1 promotes dissociation of basal transcription factors from elongating RNA polymerase II
EMBO J.
28
205-212
2009
Saccharomyces cerevisiae
Brookes, E.; Pombo, A.
Modifications of RNA polymerase II are pivotal in regulating gene expression states
EMBO Rep.
10
1213-1219
2009
Homo sapiens
Batalova, F.; Parfenov, V.
Factors related to RNA polymerase II transcription are localized in interchromatin granule clusters of Panorpa communis oocytes
Folia Histochem. Cytobiol.
47
123-126
2009
Panorpa communis
Fukuoh, A.; Ohgaki, K.; Hatae, H.; Kuraoka, I.; Aoki, Y.; Uchiumi, T.; Jacobs, H.T.; Kang, D.
DNA conformation-dependent activities of human mitochondrial RNA polymerase
Genes Cells
14
1029-1042
2009
Homo sapiens
Kazuno, H.; Fujioka, A.; Fukushima, M.; Wataya, Y.; Matsuda, A.; Sasaki, T.
1-(3-C-Ethynyl-beta-D-ribo-pentofuranosyl)cytosine (ECyd, TAS-106), a novel potent inhibitor of RNA polymerase, potentiates the cytotoxicity of CDDP in human cancer cells both in vitro and in vivo
Int. J. Oncol.
34
1373-1380
2009
Homo sapiens
Tala, A.; Wang, G.; Zemanova, M.; Okamoto, S.; Ochi, K.; Alifano, P.
Activation of dormant bacterial genes by Nonomuraea sp. strain ATCC 39727 mutant-type RNA polymerase
J. Bacteriol.
191
805-814
2009
Nonomuraea gerenzanensis
Meyer, P.A.; Ye, P.; Suh, M.H.; Zhang, M.; Fu, J.
Structure of the 12-subunit RNA polymerase II refined with the aid of anomalous diffraction data
J. Biol. Chem.
284
12933-12939
2009
Saccharomyces cerevisiae (P04050)
Ayguen, O.; Xu, X.; Liu, Y.; Takahashi, H.; Kong, S.E.; Conaway, R.C.; Conaway, J.W.; Svejstrup, J.Q.
Direct inhibition of RNA polymerase II transcription by RECQL5
J. Biol. Chem.
284
23197-23203
2009
Rattus norvegicus
Boeing, S.; Rigault, C.; Heidemann, M.; Eick, D.; Meisterernst, M.
RNA polymerase II C-terminal heptarepeat domain Ser-7 phosphorylation is established in a mediator-dependent fashion
J. Biol. Chem.
285
188-196
2010
Homo sapiens
Veras, I.; Rosen, E.M.; Schramm, L.
Inhibition of RNA polymerase III transcription by BRCA1
J. Mol. Biol.
387
523-531
2009
Homo sapiens
Yin, C.; Richter, U.; Boerner, T.; Weihe, A.
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Bacillus subtilis, Escherichia coli
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Analysis of RNA polymerase beta subunit (rpoB) gene sequences for the discriminative power of marine Vibrio species
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Vibrio natriegens, Vibrio parahaemolyticus, Vibrio rumoiensis, Vibrio chagasii, Vibrio neptunius, Vibrio ponticus, Vibrio hepatarius, Photobacterium angustum, Vibrio alginolyticus (D2SMJ0), Vibrio brasiliensis (D2SMK0)
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Non-DNA-templated addition of nucleotides to the 3' end of RNAs by the mitochondrial RNA polymerase of Physarum polycephalum
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Homo sapiens
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The structural basis for an essential subunit interaction in influenza virus RNA polymerase
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influenza A virus
Belogurov, G.A.; Vassylyeva, M.N.; Sevostyanova, A.; Appleman, J.R.; Xiang, A.X.; Lira, R.; Webber, S.E.; Klyuyev, S.; Nudler, E.; Artsimovitch, I.; Vassylyev, D.G.
Transcription inactivation through local refolding of the RNA polymerase structure
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Thermus thermophilus
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Cdc14 inhibits transcription by RNA polymerase I during anaphase
Nature
458
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Saccharomyces cerevisiae
Ignacak, M.L.; Harbaugh, S.V.; Dayyat, E.; Row, B.W.; Gozal, D.; Czyzyk-Krzeska, M.F.
Intermittent hypoxia regulates RNA polymerase II in hippocampus and prefrontal cortex
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Mus musculus, Rattus norvegicus
Haenni, S.; Studer, E.; Burkard, G.S.; Roditi, I.
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Trypanosoma brucei
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DNA topoisomerase I inhibition by camptothecin induces escape of RNA polymerase II from promoter-proximal pause site, antisense transcription and histone acetylation at the human HIF-1alpha gene locus
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Homo sapiens
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PLoS ONE
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Danio rerio
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The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei
PLoS ONE
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Trypanosoma brucei
Spahr, H.; Calero, G.; Bushnell, D.A.; Kornberg, R.D.
Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution
Proc. Natl. Acad. Sci. USA
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Schizosaccharomyces pombe (P36594), Schizosaccharomyces pombe
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Overproduction and purification of recombinant Bacillus subtilis RNA polymerase
Protein Expr. Purif.
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Bacillus subtilis
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A novel T7 RNA polymerase dependent expression system for high-level protein production in the phototrophic bacterium Rhodobacter capsulatus
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Escherichia phage T7
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Purification of RNA polymerase from mycobacteria for optimized promoter-polymerase interactions
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Mycolicibacterium smegmatis, Mycolicibacterium smegmatis mc(2)155 / ATCC 700084
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Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II
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Saccharomyces cerevisiae, Saccharomyces cerevisiae yBC-10
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Coexpression of omega subunit in E. coli is required for the maintenance of enzymatic activity of Xanthomonas campestris pv. campestris RNA polymerase
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Xanthomonas campestris (O08348), Xanthomonas campestris (P0A0Y1), Xanthomonas campestris (Q8PC55), Xanthomonas campestris (Q8PC56)
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RNA polymerase II flexibility during translocation from normal mode analysis
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Saccharomyces cerevisiae
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RNA polymerase IV functions in paramutation in Zea mays
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Zea mays
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Synthesis of de novo designed small-molecule inhibitors of bacterial RNA polymerase
Tetrahedron
64
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Escherichia coli, Thermus aquaticus
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Andrade, B.S.; Taranto, A.G.; Goes-Neto, A.; Duarte, A.A.
Comparative modeling of DNA and RNA polymerases from Moniliophthora perniciosa mitochondrial plasmid
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Caldivirga maquilingensis, Cenarchaeum symbiosum, Emiliania huxleyi, Escherichia coli, Methanocaldococcus jannaschii, Nanoarchaeum equitans, Nitrosopumilus maritimus, Pyrococcus furiosus, Saccharolobus solfataricus, Saccharomyces cerevisiae, Sulfolobus acidocaldarius, Thermofilum pendens
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Influence of DNA template choice on transcription and inhibition of Escherichia coli RNA polymerase
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Escherichia coli
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Application of Escherichia coli phage K1E DNA-dependent RNA polymerase for in vitro RNA synthesis and in vivo protein production in Bacillus megaterium
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Vectrevirus K1E (Q2WC24)
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Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
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2010
Saccharomyces cerevisiae, Thermus thermophilus
Arnold, J.J.; Smidansky, E.D.; Moustafa, I.M.; Cameron, C.E.
Human mitochondrial RNA polymerase: structure-function, mechanism and inhibition
Biochim. Biophys. Acta
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2012
Saccharomyces cerevisiae, Homo sapiens
Ponicsan, S.L.; Houel, S.; Old, W.M.; Ahn, N.G.; Goodrich, J.A.; Kugel, J.F.
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Homo sapiens
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Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication
Mol. Cell
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Homo sapiens
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The global repressor FliZ antagonizes gene expression by sigmaS-containing RNA polymerase due to overlapping DNA binding specificity
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Escherichia coli
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Two isoforms of human RNA polymerase III with specific functions in cell growth and transformation
Proc. Natl. Acad. Sci. USA
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Homo sapiens
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Soaking of DNA into crystals of archaeal RNA polymerase achieved by desalting in droplet
Acta Crystallogr. Sect. F
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Saccharolobus shibatae
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Pyrococcus sp.
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Sulfolobus acidocaldarius, Saccharolobus shibatae
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Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome
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Sulfolobus acidocaldarius, Sulfolobus acidocaldarius DSM 639
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Component H of the DNA-dependent RNA polymerases of Archaea is homologous to a subunit shared by the three eucaryal nuclear RNA polymerases
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Sulfolobus acidocaldarius (P11521), Sulfolobus acidocaldarius, Sulfolobus acidocaldarius DSM 639 (P11521)
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Clostridioides difficile
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Expression, crystallization and preliminary X-ray crystallographic analysis of DNA-directed RNA polymerase subunit L from Thermococcus onnurineus NA1
Acta Crystallogr. Sect. F
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2014
Thermococcus onnurineus (B6YTA7)
Garro, H.A.; Garcia, C.; Martin, V.S.; Tonn, C.E.; Pungitore, C.R.
A new iridoid, verbascoside and derivatives with inhibitory activity against Taq DNA polymerase
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Thermus aquaticus
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Homo sapiens, Mus musculus
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Sharma, V.; Colson, P.; Giorgi, R.; Pontarotti, P.; Raoult, D.
DNA-dependent RNA polymerase detects hidden giant viruses in published databanks
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Phytophthora parasitica virus, Acanthamoeba polyphaga Mimivirus (Q5UQ32 AND E3VZD2), Phaeocystis globosa virus (R4THW7 AND R4TFI0)
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Peanut witches'-broom phytoplasma (A7XDR4), 'Gomphocarpus physocarpus' phytoplasma (B1VAM6), Candidatus Phytoplasma mali (B3QZH0), 'Lactuca sativa' phytoplasma (Q2NJ15), Onion yellows phytoplasma (Q6YQW3), 'Zea mays' phytoplasma (S5ZC71), 'Stellaria media' phytoplasma (S5ZC79), 'Asclepias syriaca' phytoplasma (S5ZC84), 'Asclepias syriaca' phytoplasma (S5ZYX9), 'Lycopersicon esculentum' phytoplasma (S5ZIB8), 'Lycopersicon esculentum' phytoplasma (S5ZQY2), 'Poa pratensis' phytoplasma (S5ZIC5), 'Spiraea sp.' phytoplasma (S5ZID2), 'Capsicum annuum' phytoplasma (S5ZID9), 'Prunus persica' phytoplasma (S5ZQY9), 'Heracleum sosnowskyi' phytoplasma (S5ZQZ8), 'Catharanthus roseus' phytoplasma (S5ZYX4), 'Oenothera biennis' phytoplasma (S5ZYX7), 'Fragaria x ananassa' phytoplasma (S5ZYY2), 'Trifolium repens' phytoplasma (S6A6J1), 'Euphorbia pulcherrima' phytoplasma (S6A6J2), 'Malus domestica' phytoplasma (S6A6J3), 'Euphorbia pulcherrima' phytoplasma Poinsettia branch-inducing (S6A6J2), 'Malus domestica' phytoplasma Candidatus Phytoplasma mali (S6A6J3), 'Lycopersicon esculentum' phytoplasma Tomato big bud (S5ZIB8), 'Poa pratensis' phytoplasma Poa stunt (S5ZIC5), Onion yellows phytoplasma OY-M (Q6YQW3), 'Lactuca sativa' phytoplasma AYWB (Q2NJ15), 'Prunus persica' phytoplasma Canada peach X-disease (S5ZQY9), 'Stellaria media' phytoplasma Chickweed yellows (S5ZC79), 'Asclepias syriaca' phytoplasma Milkweed yellows (S5ZC84), 'Asclepias syriaca' phytoplasma Milkweed yellows (S5ZYX9), 'Fragaria x ananassa' phytoplasma Candidatus Phytoplasma fragariae (S5ZYY2), 'Spiraea sp.' phytoplasma Spiraea stunt (S5ZID2), 'Trifolium repens' phytoplasma Clover phyllody (S6A6J1), 'Catharanthus roseus' phytoplasma Maryland aster yellows (S5ZYX4), Candidatus Phytoplasma mali AT (B3QZH0), 'Zea mays' phytoplasma Maize bushy stunt (S5ZC71), 'Gomphocarpus physocarpus' phytoplasma Candidatus Phytoplasma australiense (B1VAM6), 'Heracleum sosnowskyi' phytoplasma Heracleum yellows (S5ZQZ8), 'Oenothera biennis' phytoplasma Oenothera biennis yellows (S5ZYX7), 'Capsicum annuum' phytoplasma Candidatus Phytoplasma solani (S5ZID9), Peanut witches'-broom phytoplasma Peanut witches-broom (A7XDR4), 'Lycopersicon esculentum' phytoplasma Tomato yellows (S5ZQY2)
Abe, Y.; Fujisaki, N.; Miyoshi, T.; Watanabe, N.; Katayama, T.; Ueda, T.
Functional analysis of CedA based on its structure: residues important in binding of DNA and RNA polymerase and in the cell division regulation
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Escherichia coli (P0A8T7 AND P0A8V2 AND P0A7Z4)
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RNA polymerase III regulates cytosolic RNA:DNA hybrids and intracellular microRNA expression
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Homo sapiens
Morrill, S.A.; Exner, A.E.; Babokhov, M.; Reinfeld, B.I.; Fuchs, S.M.
DNA instability maintains the repeat length of the yeast RNA polymerase II C-terminal domain
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Saccharomyces cerevisiae, Saccharomyces cerevisiae GRY3019
Ramachandran, A.; Nandakumar, D.; Deshpande, A.P.; Lucas, T.P.; R-Bhojappa, R.; Tang, G.Q.; Raney, K.; Yin, Y.W.; Patel, S.S.
The yeast mitochondrial RNA polymerase and transcription factor complex catalyzes efficient priming of DNA synthesis on single-stranded DNA
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Saccharomyces cerevisiae
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Basal transcription is regulated by lipopolysaccharide and glucosamine via the regulation of DNA binding of RNA polymerase II in RAW264.7 cells
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Mus musculus
Merkl, P.; Perez-Fernandez, J.; Pilsl, M.; Reiter, A.; Williams, L.; Gerber, J.; Boehm, M.; Deutzmann, R.; Griesenbeck, J.; Milkereit, P.; Tschochner, H.
Binding of the termination factor Nsi1 to its cognate DNA site is sufficient to terminate RNA polymerase I transcription in vitro and to induce termination in vivo
Mol. Cell. Biol.
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Saccharomyces cerevisiae, Saccharomyces cerevisiae y2423
Buck, S.W.; Maqani, N.; Matecic, M.; Hontz, R.D.; Fine, R.D.; Li, M.; Smith, J.S.
RNA polymerase I and Fob1 contributions to transcriptional silencing at the yeast rDNA locus
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Saccharomyces cerevisiae, Saccharomyces cerevisiae JB740
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Light-dependent, plastome-wide association of the plastid-encoded RNA polymerase with chloroplast DNA
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Nicotiana tabacum (P06269), Nicotiana tabacum
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H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions
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Escherichia coli
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Simple in vitro assay to evaluate the incorporation efficiency of ribonucleotide analog 5-triphosphates into RNA by human mitochondrial DNA-dependent RNA polymerase
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Homo sapiens (O00411), Homo sapiens
Lara-Gonzalez, S.; Dantas Machado, A.C.; Rao, S.; Napoli, A.A.; Birktoft, J.; Di Felice, R.; Rohs, R.; Lawson, C.L.
The RNA polymerase alpha subunit recognizes the DNA shape of the upstream promoter element
Biochemistry
59
4523-4532
2020
Escherichia coli (P0A7Z4), Escherichia coli K12 (P0A7Z4)
Mirzakhanyan, Y.; Gershon, P.D.
Multisubunit DNA-dependent RNA polymerases from Vaccinia Virus and other nucleocytoplasmic large-DNA viruses impressions from the age of structure
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Vaccinia virus (P21603), Vaccinia virus, Vaccinia virus Western Reserve (P21603)
Glyde, R.; Ye, F.; Jovanovic, M.; Kotta-Loizou, I.; Buck, M.; Zhang, X.
Structures of bacterial RNA polymerase complexes reveal the mechanism of DNA loading and transcription initiation
Mol. Cell
70
1111-1120
2018
Escherichia coli (P0A8T7 AND P0A8V2 AND P0A7Z4 AND P0A800), Escherichia coli K12 (P0A8T7 AND P0A8V2 AND P0A7Z4 AND P0A800)
Kang, W.; Ha, K.S.; Uhm, H.; Park, K.; Lee, J.Y.; Hohng, S.; Kang, C.
Transcription reinitiation by recycling RNA polymerase that diffuses on DNA after releasing terminated RNA
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Escherichia coli
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Transcriptional bursting is intrinsically caused by interplay between RNA polymerases on DNA
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Escherichia coli
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Single-peptide DNA-dependent RNA polymerase homologous to multi-subunit RNA polymerase
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Spbetavirus SPbeta (O64076)
Raindlova, V.; Janouskova, M.; Slavickova, M.; Perlikova, P.; Bohacova, S.; Milisavljevic, N.; Sanderova, H.; Benda, M.; Barvik, I.; Krasny, L.; Hocek, M.
Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases
Nucleic Acids Res.
44
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Bacillus subtilis
Ooi, W.Y.; Murayama, Y.; Mekler, V.; Minakhin, L.; Severinov, K.; Yokoyama, S.; Sekine, S.I.
A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation
Nucleic Acids Res.
46
431-441
2018
Escherichia coli, Thermus thermophilus (Q5SHR6 AND Q8RQE9 AND Q8RQE8 AND Q8RQE7)
Lilic, M.; Chen, J.; Boyaci, H.; Braffman, N.; Hubin, E.A.; Herrmann, J.; Mueller, R.; Mooney, R.; Landick, R.; Darst, S.A.; Campbell, E.A.
The antibiotic sorangicin A inhibits promoter DNA unwinding in a Mycobacterium tuberculosis rifampicin-resistant RNA polymerase
Proc. Natl. Acad. Sci. USA
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30423-30432
2020
Mycolicibacterium smegmatis (A0QSL8 AND P60281 AND A0QS66 AND A0QWT1), Mycolicibacterium smegmatis (P60281 AND A0QS66 AND A0QSL8 AND A0QWT1 AND A0QW02), Mycobacterium tuberculosis (P9WGY9 AND P9WGY7 AND P9WGZ1 AND P9WGY5 AND P9WGI1), Mycobacterium tuberculosis, Mycolicibacterium smegmatis ATCC 700084 (A0QSL8 AND P60281 AND A0QS66 AND A0QWT1), Mycolicibacterium smegmatis ATCC 700084 (P60281 AND A0QS66 AND A0QSL8 AND A0QWT1 AND A0QW02), Mycobacterium tuberculosis ATCC 25618 (P9WGY9 AND P9WGY7 AND P9WGZ1 AND P9WGY5 AND P9WGI1)
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