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Information on Organism Pseudomonas chlororaphis subsp. aureofaciens

Synonyms:
ATCC 13985; bacterium ASFP-49; bacterium ASFP-6; bacterium ASFP-98; CCUG 712; CFBP 2133; DSM 6698; LMG 1245; LMG:1245; NBRC 3521; NCIMB 9030; NCTC 10686; Pseudomonas aureofaciens Kluyver 1956 (Approved Lists 1980); Pseudomonas aureofaciens; Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) Peix et al. 2007; Pseudomonas chlororaphis subsp. aureofaciens; Pseudomonas fluorescens biotype e; Pseudomonas fluorescens (biotype E); Pseudomonas polychromogenes;
TaxTree of Organism Pseudomonas chlororaphis subsp. aureofaciens
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Pseudomonadales can be found in Brenda BRENDA pathways(order)
Pseudomonadaceae can be found in Brenda BRENDA pathways(family)
Pseudomonas can be found in Brenda BRENDA pathways(genus)
Pseudomonas chlororaphis group can be found in Brenda (species group)
Pseudomonas chlororaphis can be found in Brenda BRENDA pathways(species)
Pseudomonas chlororaphis subsp. aureofaciens can be found in Brenda BRENDA pathways(subspecies)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,3-propanediol biosynthesis (engineered)
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PWY-7385
2,3-dihydroxybenzoate biosynthesis
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PWY-5901
2-arachidonoylglycerol biosynthesis
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PWY-8052
2-nitrobenzoate degradation I
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PWY-5647
2-nitrobenzoate degradation II
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PWY-5648
2-nitrotoluene degradation
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PWY-5641
3-chlorocatechol degradation
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3-dehydroquinate biosynthesis I
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PWY-6164
3-hydroxy-4-methyl-anthranilate biosynthesis I
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PWY-7717
3-hydroxy-4-methyl-anthranilate biosynthesis II
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PWY-7765
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II
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PWY-7282
4-hydroxy-2(1H)-quinolone biosynthesis
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PWY-6661
4-hydroxy-3-prenylbenzoate biosynthesis
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PWY-7303
4-hydroxymandelate degradation
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4-sulfocatechol degradation
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PWY-6041
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acridone alkaloid biosynthesis
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PWY-5958
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
aerobic toluene degradation
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Alanine, aspartate and glutamate metabolism
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alkylnitronates degradation
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PWY-723
Aminobenzoate degradation
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ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
anthranilate degradation I (aerobic)
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PWY-6079
Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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Ascorbate and aldarate metabolism
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ascorbate metabolism
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autoinducer AI-1 biosynthesis
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PWY-6157
avenanthramide biosynthesis
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PWY-8157
bacilysin biosynthesis
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PWY-7626
bacterial bioluminescence
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PWY-7723
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
Benzoate degradation
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Biosynthesis of secondary metabolites
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Biosynthesis of siderophore group nonribosomal peptides
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Butanoate metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
catechol degradation to beta-ketoadipate
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CATECHOL-ORTHO-CLEAVAGE-PWY
Chloroalkane and chloroalkene degradation
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Chlorocyclohexane and chlorobenzene degradation
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chorismate metabolism
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cinnamoyl-CoA biosynthesis
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PWY-6457
Citrate cycle (TCA cycle)
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citric acid cycle
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creatinine degradation
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creatinine degradation II
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PWY-4722
Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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D-Amino acid metabolism
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degradation of sugar alcohols
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denitrification
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Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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enterobactin biosynthesis
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Entner Doudoroff pathway
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ephedrine biosynthesis
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PWY-5883
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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PWY-7124
Ether lipid metabolism
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Fatty acid degradation
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Fe(II) oxidation
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PWY-6692
Fluorobenzoate degradation
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formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
formate to nitrite electron transfer
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PWY0-1585
Fructose and mannose metabolism
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Galactose metabolism
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gallate degradation
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gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glutamate and glutamine metabolism
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glutaminyl-tRNAgln biosynthesis via transamidation
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PWY-5921
Glutathione metabolism
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glycerol-3-phosphate to fumarate electron transfer
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PWY0-1582
Glycerolipid metabolism
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Glycerophospholipid metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - ganglio series
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
hydrogen to fumarate electron transfer
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PWY0-1576
incomplete reductive TCA cycle
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P42-PWY
Inositol phosphate metabolism
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isopropanol biosynthesis (engineered)
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PWY-6876
Isoquinoline alkaloid biosynthesis
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ketogenesis
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PWY66-367
L-arginine degradation II (AST pathway)
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AST-PWY
L-ascorbate degradation II (bacterial, aerobic)
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PWY-6961
L-ascorbate degradation III
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PWY-6960
L-asparagine biosynthesis III (tRNA-dependent)
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PWY490-4
L-citrulline biosynthesis
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CITRULBIO-PWY
L-glutamate biosynthesis I
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GLUTSYN-PWY
L-glutamine degradation I
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GLUTAMINDEG-PWY
L-lysine biosynthesis III
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PWY-2942
L-phenylalanine biosynthesis I
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PHESYN
L-phenylalanine biosynthesis II
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PWY-3462
L-phenylalanine biosynthesis III (cytosolic, plants)
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PWY-7432
L-tryptophan biosynthesis
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TRPSYN-PWY
L-tryptophan degradation I (via anthranilate)
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TRPCAT-PWY
L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
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PWY-5651
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tryptophan degradation XI (mammalian, via kynurenine)
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PWY-6309
L-tryptophan degradation XII (Geobacillus)
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PWY-6505
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine biosynthesis II
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PWY-3461
L-tyrosine biosynthesis III
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PWY-6120
lipid metabolism
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Lysine biosynthesis
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lysine metabolism
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Metabolic pathways
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metabolism of disaccharids
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Methane metabolism
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methanol oxidation to formaldehyde IV
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PWY-5506
methyl indole-3-acetate interconversion
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PWY-6303
methylaspartate cycle
methylsalicylate degradation
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PWY18C3-24
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
NADH to fumarate electron transfer
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PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nicotine degradation IV
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PWY66-201
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction V (assimilatory)
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PWY-5675
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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nitrogen remobilization from senescing leaves
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PWY-6549
non-pathway related
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Novobiocin biosynthesis
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o-diquinones biosynthesis
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PWY-6752
Other glycan degradation
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Oxidative phosphorylation
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oxidative phosphorylation
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p-cymene degradation to p-cumate
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PWY-741
partial TCA cycle (obligate autotrophs)
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PWY-5913
Pentose phosphate pathway
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pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
Phenazine biosynthesis
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phenol degradation
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Phenylalanine metabolism
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phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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Phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
phospholipases
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LIPASYN-PWY
phospholipid remodeling (phosphatidylethanolamine, yeast)
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PWY-7409
Photosynthesis
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photosynthesis
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photosynthesis light reactions
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PWY-101
plasmalogen biosynthesis I (aerobic)
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PWY-7782
plasmalogen degradation
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PWY-7783
Polycyclic aromatic hydrocarbon degradation
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polyhydroxybutanoate biosynthesis
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PWY1-3
polyhydroxydecanoate biosynthesis
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PWY-6657
propionate fermentation
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protocatechuate degradation II (ortho-cleavage pathway)
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PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY
pyridoxal 5'-phosphate biosynthesis I
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PYRIDOXSYN-PWY
pyridoxal 5'-phosphate salvage I
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PLPSAL-PWY
pyridoxal 5'-phosphate salvage II (plants)
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PWY-7204
Pyrimidine metabolism
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pyrimidine metabolism
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pyrimidine nucleobases salvage II
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PWY-7194
pyrimidine ribonucleosides salvage III
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PWY-7195
pyrrolnitrin biosynthesis
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PWY-6831
pyruvate fermentation to acetone
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PWY-6588
pyruvate fermentation to propanoate I
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P108-PWY
quinate degradation
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quinate degradation I
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QUINATEDEG-PWY
reactive oxygen species degradation
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DETOX1-PWY-1
rebeccamycin biosynthesis
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PWY-6324
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
retinol biosynthesis
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PWY-6857
rosmarinic acid biosynthesis I
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PWY-5048
salinosporamide A biosynthesis
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PWY-6627
sedoheptulose bisphosphate bypass
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PWY0-1517
shikimate degradation I
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SHIKIMATEDEG-PWY
Sphingolipid metabolism
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Staurosporine biosynthesis
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Styrene degradation
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suberin monomers biosynthesis
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
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PWY0-1353
succinate to cytochrome bo oxidase electron transfer
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PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
succinate to plastoquinol oxidase
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PWY1YI0-8
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
superoxide radicals degradation
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DETOX1-PWY
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
superpathway of methylsalicylate metabolism
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PWY18C3-25
taurine biosynthesis I
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PWY-5331
taurine biosynthesis II
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PWY-7850
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
thyroid hormone biosynthesis
Toluene degradation
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toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
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LIPAS-PWY
Tryptophan metabolism
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tryptophan metabolism
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Tyrosine metabolism
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tyrosine metabolism
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Vitamin B6 metabolism
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vitamin B6 metabolism
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Xylene degradation
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xyloglucan degradation II (exoglucanase)
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PWY-6807
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Pseudomonas chlororaphis subsp. aureofaciens)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA