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Information on Organism Photorhabdus luminescens

Synonyms:
ATCC 29999; CIP 106429; DSM 3368; Photorhabdus luminescens (Poinar and Thomas 1979) (sic) Boemare et al. 1993; Photorhabdus luminescens; Photorhabdus luminescens (Thomas and Poinar 1979) Boemare et al. 1993 emend. Fischer-LeSaux et al. 1999; Photorhabdus luminescens (Thomas and Poinar 1979) Boemare et al. 1993 emend. Machado et al. 2019; strain Hb; Xenorhabdus luminescens; Xenorhabdus luminescens Thomas and Poinar 1979 (Approved Lists 1980);
Word Map for Organism Photorhabdus luminescens
TaxTree of Organism Photorhabdus luminescens
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Enterobacterales can be found in Brenda BRENDA pathways(order)
Morganellaceae can be found in Brenda BRENDA pathways(family)
Photorhabdus can be found in Brenda BRENDA pathways(genus)
Photorhabdus luminescens can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
1,5-anhydrofructose degradation
-
-
PWY-6992
2-arachidonoylglycerol biosynthesis
-
-
PWY-8052
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-hydroxypentadienoate
-
-
HCAMHPDEG-PWY
3-phenylpropionate degradation
-
-
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
6-methylpretetramide biosynthesis
-
-
PWY-7811
acetoin degradation
-
-
acetone degradation I (to methylglyoxal)
-
-
PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
acridone alkaloid biosynthesis
-
-
PWY-5958
Acridone alkaloid biosynthesis
-
-
acrylonitrile degradation I
-
-
PWY-7308
acyl carrier protein activation
-
-
PWY-6012-1
acyl carrier protein metabolism
-
-
PWY-6012
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
Aflatoxin biosynthesis
-
-
alanine metabolism
-
-
alkane biosynthesis I
-
-
PWY-7032
alpha-linolenate metabolites biosynthesis
-
-
PWY-8398
alpha-Linolenic acid metabolism
-
-
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
Amino sugar and nucleotide sugar metabolism
-
-
Aminobenzoate degradation
-
-
aminopropylcadaverine biosynthesis
-
-
PWY0-1303
ammonia oxidation II (anaerobic)
-
-
P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anandamide biosynthesis I
-
-
PWY-8051
anandamide biosynthesis II
-
-
PWY-8053
androgen and estrogen metabolism
-
-
apratoxin A biosynthesis
-
-
PWY-8361
arachidonate metabolites biosynthesis
-
-
PWY-8397
Arachidonic acid metabolism
-
-
arachidonic acid metabolism
-
-
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
arginine metabolism
-
-
Ascorbate and aldarate metabolism
-
-
ascorbate metabolism
-
-
ascorbate recycling (cytosolic)
-
-
PWY-6370
aspirin triggered resolvin D biosynthesis
-
-
PWY66-395
aspirin triggered resolvin E biosynthesis
-
-
PWY66-394
Atrazine degradation
-
-
autoinducer AI-1 biosynthesis
-
-
PWY-6157
autoinducer AI-2 biosynthesis I
-
-
PWY-6153
autoinducer AI-2 biosynthesis II (Vibrio)
-
-
PWY-6154
avenanthramide biosynthesis
-
-
PWY-8157
bacilysin biosynthesis
bacterial bioluminescence
-
-
PWY-7723
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
-
-
PWY-6444
beta-(1,4)-mannan degradation
-
-
PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
-
-
PWY-7586
beta-Alanine metabolism
-
-
Bifidobacterium shunt
-
-
P124-PWY
Biosynthesis of 12-, 14- and 16-membered macrolides
-
-
Biosynthesis of secondary metabolites
-
-
Biosynthesis of siderophore group nonribosomal peptides
-
-
Biosynthesis of type II polyketide backbone
-
-
Biosynthesis of type II polyketide products
-
-
Biosynthesis of unsaturated fatty acids
-
-
Biosynthesis of various secondary metabolites - part 1
-
-
Biosynthesis of various secondary metabolites - part 2
-
-
biotin biosynthesis
-
-
Biotin metabolism
-
-
biotin-carboxyl carrier protein assembly
-
-
PWY0-1264
bisucaberin biosynthesis
-
-
PWY-6381
bryostatin biosynthesis
-
-
PWY-8047
bupropion degradation
-
-
PWY66-241
Butanoate metabolism
-
-
C4 and CAM-carbon fixation
-
-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C5-Branched dibasic acid metabolism
-
-
cadaverine biosynthesis
-
-
PWY0-1601
caffeine biosynthesis I
-
-
PWY-5037
caffeine biosynthesis II (via paraxanthine)
-
-
PWY-5038
Caffeine metabolism
-
-
camalexin biosynthesis
-
-
CAMALEXIN-SYN
Caprolactam degradation
-
-
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
-
-
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
Chloroalkane and chloroalkene degradation
-
-
cholesterol degradation to androstenedione I (cholesterol oxidase)
-
-
PWY-6945
cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate
-
-
PWY-6690
cinnamate esters biosynthesis
-
-
PWY-5968
cinnamoyl-CoA biosynthesis
-
-
PWY-6457
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
CO2 fixation in Crenarchaeota
-
-
coumarins biosynthesis (engineered)
-
-
PWY-7398
cuticular wax biosynthesis
-
-
PWY-282
cutin biosynthesis
-
-
PWY-321
Cutin, suberine and wax biosynthesis
-
-
Cysteine and methionine metabolism
-
-
cysteine metabolism
-
-
d-mannose degradation
-
-
D-mannose degradation I
-
-
MANNCAT-PWY
D-mannose degradation II
-
-
PWY3O-1743
daunorubicin biosynthesis
degradation of aromatic, nitrogen containing compounds
-
-
degradation of pentoses
-
-
denitrification
-
-
desferrioxamine B biosynthesis
-
-
PWY-6376
desferrioxamine E biosynthesis
-
-
PWY-6375
di-homo-gamma-linolenate metabolites biosynthesis
-
-
PWY-8396
diethylphosphate degradation
-
-
PWY-5491
docosahexaenoate metabolites biosynthesis
-
-
PWY-8400
Drug metabolism - cytochrome P450
-
-
Drug metabolism - other enzymes
-
-
elloramycin biosynthesis
-
-
enterobactin biosynthesis
-
-
ENTBACSYN-PWY
Entner Doudoroff pathway
-
-
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
ephedrine biosynthesis
-
-
PWY-5883
erythromycin D biosynthesis
-
-
PWY-7106
ethanol degradation IV
-
-
PWY66-162
ethene biosynthesis III (microbes)
-
-
PWY-6854
Ether lipid metabolism
-
-
Fatty acid biosynthesis
-
-
fatty acid biosynthesis initiation (mitochondria)
-
-
PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
-
-
PWY-6799
fatty acid biosynthesis initiation (type I)
-
-
PWY-5966-1
fatty acid biosynthesis initiation (type II)
-
-
PWY-4381
Fatty acid degradation
-
-
Fatty acid elongation
-
-
Fe(II) oxidation
-
-
PWY-6692
flavin biosynthesis
-
-
Folate biosynthesis
-
-
folate transformations I
-
-
PWY-2201
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
ganglio-series glycosphingolipids biosynthesis
-
-
PWY-7836
GDP-mannose biosynthesis
-
-
PWY-5659
gliotoxin biosynthesis
-
-
PWY-7533
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis III
-
-
PWY66-399
glucose and glucose-1-phosphate degradation
-
-
GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
-
-
DHGLUCONATE-PYR-CAT-PWY
glutamate and glutamine metabolism
-
-
Glutathione metabolism
-
-
glutathione metabolism
-
-
glutathione-mediated detoxification I
-
-
PWY-4061
glutathione-mediated detoxification II
-
-
PWY-6842
glutathione-peroxide redox reactions
-
-
PWY-4081
glycerol degradation to butanol
-
-
PWY-7003
Glycerolipid metabolism
-
-
Glycerophospholipid metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen degradation II
-
-
PWY-5941
glycogen metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
Glycosaminoglycan degradation
-
-
Glycosphingolipid biosynthesis - ganglio series
-
-
Glycosphingolipid biosynthesis - globo and isoglobo series
-
-
Glycosphingolipid biosynthesis - lacto and neolacto series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
heptadecane biosynthesis
-
-
PWY-6622
heterolactic fermentation
-
-
P122-PWY
Histidine metabolism
-
-
histidine metabolism
-
-
homocysteine and cysteine interconversion
-
-
PWY-801
hydrogen sulfide biosynthesis II (mammalian)
-
-
PWY66-426
IAA biosynthesis
-
-
icosapentaenoate metabolites biosynthesis
-
-
PWY-8399
incomplete reductive TCA cycle
-
-
P42-PWY
indole glucosinolate activation (intact plant cell)
-
-
PWYQT-4477
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
Inositol phosphate metabolism
-
-
Insect hormone biosynthesis
-
-
inulin degradation
-
-
PWY-8314
isoleucine metabolism
-
-
Isoquinoline alkaloid biosynthesis
-
-
jadomycin biosynthesis
-
-
PWY-6679
L-arginine degradation V (arginine deiminase pathway)
-
-
ARGDEGRAD-PWY
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
L-arginine degradation XIII (reductive Stickland reaction)
-
-
PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
-
-
PWY-6344
L-ascorbate biosynthesis IV (animals, D-glucuronate pathway)
-
-
PWY3DJ-35471
L-ascorbate biosynthesis VI (plants, myo-inositol pathway)
-
-
PWY-8142
L-ascorbate biosynthesis VIII (engineered pathway)
-
-
PWY-7165
L-cysteine biosynthesis III (from L-homocysteine)
-
-
HOMOCYSDEGR-PWY
L-cysteine biosynthesis VI (reverse transsulfuration)
-
-
PWY-I9
L-glutamate degradation VI (to pyruvate)
-
-
PWY-5087
L-histidine degradation I
-
-
HISDEG-PWY
L-histidine degradation II
-
-
PWY-5028
L-histidine degradation III
-
-
PWY-5030
L-histidine degradation VI
-
-
HISHP-PWY
L-isoleucine biosynthesis I (from threonine)
-
-
ILEUSYN-PWY
L-isoleucine biosynthesis II
-
-
PWY-5101
L-isoleucine biosynthesis III
-
-
PWY-5103
L-isoleucine biosynthesis IV
-
-
PWY-5104
L-lysine degradation I
-
-
PWY0-461
L-lysine degradation X
-
-
PWY-6328
L-serine biosynthesis I
-
-
SERSYN-PWY
L-valine biosynthesis
-
-
VALSYN-PWY
linoleate metabolites biosynthesis
-
-
PWY-8395
Linoleic acid metabolism
-
-
lipid metabolism
-
-
lupanine biosynthesis
-
-
PWY-5468
Lysine degradation
-
-
lysine metabolism
-
-
macrolide antibiotic biosynthesis
-
-
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
mannitol biosynthesis
-
-
PWY-3881
mannitol degradation II
-
-
PWY-3861
maresin biosynthesis
-
-
PWY-8356
melatonin degradation I
-
-
PWY-6398
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methionine metabolism
-
-
methyl indole-3-acetate interconversion
-
-
PWY-6303
methylaspartate cycle
methylsalicylate degradation
-
-
PWY18C3-24
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
monoacylglycerol metabolism (yeast)
-
-
PWY-7420
mupirocin biosynthesis
-
-
PWY-8012
mycobactin biosynthesis
-
-
PWY185E-1
NAD metabolism
-
-
NAD phosphorylation and dephosphorylation
-
-
NADPHOS-DEPHOS-PWY
NAD salvage pathway III (to nicotinamide riboside)
-
-
NAD-BIOSYNTHESIS-II
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
naringenin biosynthesis (engineered)
-
-
PWY-7397
nicotine degradation IV
-
-
PWY66-201
nicotine degradation V
-
-
PWY66-221
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
-
-
PWY-381
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitric oxide biosynthesis II (mammals)
-
-
PWY-4983
nitrifier denitrification
-
-
PWY-7084
nitrite-dependent anaerobic methane oxidation
-
-
PWY-6523
nitroethane degradation
-
-
PWY-5355
Nitrogen metabolism
-
-
nocardicin A biosynthesis
-
-
PWY-7797
non-pathway related
-
-
O-Antigen nucleotide sugar biosynthesis
-
-
o-diquinones biosynthesis
-
-
PWY-6752
oleate biosynthesis II (animals and fungi)
-
-
PWY-5996
One carbon pool by folate
-
-
Other glycan degradation
-
-
Other types of O-glycan biosynthesis
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
pederin biosynthesis
-
-
PWY-8049
Penicillin and cephalosporin biosynthesis
-
-
pentachlorophenol degradation
-
-
PCPDEG-PWY
Pentose phosphate pathway
-
-
peptido-conjugates in tissue regeneration biosynthesis
-
-
PWY-8355
petrobactin biosynthesis
-
-
PWY-6289
Phenylalanine metabolism
-
-
Phenylpropanoid biosynthesis
-
-
phenylpropanoid biosynthesis
-
-
phenylpropanoid biosynthesis, initial reactions
-
-
PWY1F-467
phosphate acquisition
-
-
PWY-6348
phosphatidylcholine acyl editing
-
-
PWY-6803
phospholipases
-
-
LIPASYN-PWY
phospholipid remodeling (phosphatidate, yeast)
-
-
PWY-7417
phospholipid remodeling (phosphatidylcholine, yeast)
-
-
PWY-7416
phospholipid remodeling (phosphatidylethanolamine, yeast)
-
-
PWY-7409
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
polyamine pathway
-
-
Propanoate metabolism
-
-
protectin biosynthesis
-
-
PWY-8357
protective electron sinks in the thylakoid membrane (PSII to PTOX)
-
-
PWY1YI0-7
protein O-[N-acetyl]-glucosylation
-
-
PWY-7437
Purine metabolism
-
-
purine metabolism
-
-
putrescine biosynthesis III
-
-
PWY-46
pyridoxal 5'-phosphate biosynthesis I
-
-
PYRIDOXSYN-PWY
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis III
-
-
PWY-6545
pyrimidine deoxyribonucleotides de novo biosynthesis IV
-
-
PWY-7198
pyruvate fermentation to (R)-acetoin I
-
-
PWY-5938
pyruvate fermentation to (R)-acetoin II
-
-
PWY-5939
pyruvate fermentation to (S)-acetoin
-
-
PWY-6389
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
resolvin D biosynthesis
-
-
PWY66-397
retinol biosynthesis
-
-
PWY-6857
Retinol metabolism
-
-
Riboflavin metabolism
-
-
rosmarinic acid biosynthesis I
-
-
PWY-5048
S-adenosyl-L-methionine salvage I
-
-
PWY-6151
saframycin A biosynthesis
-
-
PWY-7671
serine metabolism
-
-
sorbitol biosynthesis II
-
-
PWY-5530
sphingolipid biosynthesis (mammals)
-
-
PWY-7277
Sphingolipid metabolism
-
-
sphingomyelin metabolism
-
-
PWY3DJ-11281
sporopollenin precursors biosynthesis
-
-
PWY-6733
Starch and sucrose metabolism
-
-
starch degradation III
-
-
PWY-6731
starch degradation V
-
-
PWY-6737
stearate biosynthesis I (animals)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
Steroid degradation
-
-
Steroid hormone biosynthesis
-
-
Styrene degradation
-
-
suberin monomers biosynthesis
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose biosynthesis II
-
-
PWY-7238
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
sulfopterin metabolism
-
-
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of methylsalicylate metabolism
-
-
PWY18C3-25
superpathway of ornithine degradation
-
-
ORNDEG-PWY
taurine biosynthesis III
-
-
PWY-8359
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Tetracycline biosynthesis
-
-
tetrahydrofolate metabolism
-
-
theobromine biosynthesis I
-
-
PWY-5039
Thiamine metabolism
-
-
triacylglycerol degradation
-
-
LIPAS-PWY
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
-
-
Tyrosine metabolism
-
-
urea cycle
-
-
urea degradation II
-
-
PWY-5704
UTP and CTP dephosphorylation I
-
-
PWY-7185
valine metabolism
-
-
Valine, leucine and isoleucine biosynthesis
-
-
vanillin biosynthesis I
-
-
PWY-5665
vitamin B1 metabolism
-
-
Vitamin B6 metabolism
-
-
vitamin B6 metabolism
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Photorhabdus luminescens)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA