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Reference on EC 1.7.2.4 - nitrous-oxide reductase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Lu, W.P.; Ragsdale, S.W.
Reductive activation of the coenzyme A/acetyl-CoA isotopic exchange reaction catalyzed by carbon monoxide dehydrogenase from Clostridium thermoaceticum and its inhibition by nitrous oxide and carbon monoxide
J. Biol. Chem.
266
3554-3564
1991
Electron
Automatic Mining of ENzyme DAta
Haltia, T.; Brown, K.; Tegoni, M.; Gambillau, C.; Saraste, M.; Mattila, K.; Djinovic-Carugo, K.
The crystal structure of nitrous oxide reductase from Paracoccus denitrificans at 1.6 A resolution
Biochem. J.
369
77-88
2003
BRENDA: Paracoccus denitrificans
Textmining: Marinobacter hydrocarbonoclasticus
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Rasmussen, T.; Berks, B.C.; Butt, J.N.; Thomson, A.J.
Multiple forms of the catalytic centre, Cuz, in the enzyme nitrous oxide reductase from Paracoccus pantotrophus
Biochem. J.
364
807-815
2002
Paracoccus pantotrophus
Manually annotated by BRENDA team
Rasmussen, T.; Berks, B.C.; Sanders-Loehr, J.; Dooley, D.M.; Zumft, W.G.; Thomson, A.J.
The catalytic center in nitrous oxide reductase, CuZ, is a copper-sulfide cluster
Biochemistry
39
12753-12756
2000
Paracoccus pantotrophus, Pseudomonas stutzeri
Manually annotated by BRENDA team
Prudencio, M.; Pereira, A.S.; Tavares, P.; Besson, S.; Cabrito, I.; Brown, K.; Samyn, B.; Devreese, B.; Van Beeumen, J.; Rusnak, F.; Fauque, G.; Moura, J.J.G.; Tegoni, M.; Cambillau, C.; Moura, I.
Purification, Characterization, and Preliminary Crystallographic Study of Copper-Containing Nitrous Oxide Reductase from Pseudomonas nautica 617
Biochemistry
39
3899-3907
2000
BRENDA: Marinobacter nauticus, Marinobacter nauticus 617
Textmining: Marinobacter hydrocarbonoclasticus
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Brown, K.; Tegoni, M.; Prudencio, M.; Pereira, A.S.; Besson, S.; Moura, J.J.; Moura, I.; Cambillau, C.
A novel type of catalytic copper cluster in nitrous oxide reductase
Nat. Struct. Biol.
7
191-195
2000
Marinobacter nauticus, Marinobacter nauticus 617
Manually annotated by BRENDA team
Sato, K.; Okubo, A.; Yamazaki, S.
Anaerobic purification and characterization of nitrous oxide reductase from Rhodobacter sphaeroides f. sp. denitrificans IL106
J. Biochem.
125
864-868
1999
BRENDA: Cereibacter sphaeroides
Textmining: Rhodobacter
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Sabaty, M.; Schwintner, C.; Cahors, S.; Richaud, P.; Vermeglio, A.
Nitrite and nitrous oxide reductase regulation by nitrogen oxides in Rhodobacter sphaeroides f. sp. denitrificans IL106
J. Bacteriol.
181
6028-6032
1999
Cereibacter sphaeroides
Manually annotated by BRENDA team
Ferretti, S.; Grossmann, J.G.; Hasnain, S.S.; Eady, R.R.; Smith, B.E.
Biochemical characterization and solution structure of nitrous oxide reductase from Alcaligenes xylosoxidans (NCIMB 11015)
Eur. J. Biochem.
259
651-659
1999
Achromobacter xylosoxidans
Manually annotated by BRENDA team
Sato, K.; Okubo, A.; Yamazaki, S.
Characterization of a multi-copper enzyme, nitrous oxide reductase, from Rhodobacter sphaeroides f. sp. denitrificans
J. Biochem.
124
51-54
1998
Cereibacter sphaeroides
Manually annotated by BRENDA team
Farrar, J.A.; Zumft, W.G.; Thomson, A.J.
CuA and CuZ are variants of the electron transfer center in nitrous oxide reductase
Proc. Natl. Acad. Sci. USA
95
9891-9896
1998
BRENDA: Pseudomonas stutzeri
Textmining: Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Hole, U.H.; Vollack, K.U.; Zumft, W.G.; Eisenmann, E.; Siddiqui, R.A.; Friedrich, B.; Kroneck, P.M.H.
Characterization of the membranous denitrification enzymes nitrite reductase (cytochrome cd1) and copper-containing nitrous oxide reductase from Thiobacillus denitrificans
Arch. Microbiol.
165
55-61
1996
BRENDA: Thiobacillus denitrificans
Textmining: Pseudomonas stutzeri
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Dreusch, A.; Riester, J.; Kroneck, P.M.; Zumft, W.G.
Mutation of the conserved Cys165 outside of the CuA domain destabilizes nitrous oxide reductase but maintains its catalytic activity. Evidence for disulfide bridges and a putative protein disulfide isomerase gene
Eur. J. Biochem.
237
447-453
1996
Pseudomonas stutzeri
Manually annotated by BRENDA team
Zhang, C.s.; Hollocher, T.C.
The reaction of reduced cytochromes c with nitrous oxide reductase of Wolinella succinogenes
Biochim. Biophys. Acta
1142
253-261
1993
Wolinella succinogenes
-
Manually annotated by BRENDA team
Berks, B.C.; Baratta, D.; Richardson, D.J.; Ferguson, S.J.
Purification and characterization of a nitrous oxide reductase from Thiosphaera pantotropha. Implications for the mechanism of aerobic nitrous oxide reduction
Eur. J. Biochem.
212
467-476
1993
BRENDA: Paracoccus pantotrophus, Paracoccus pantotrophus LMD 82.5
Textmining: Bacteria, Equus caballus, Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Jones, A.M.; Knowles, R.
Denitrification in Flexibacter canadensis
Can. J. Microbiol.
36
430-434
1990
Solitalea canadensis
-
Manually annotated by BRENDA team
Hulse, C.L.; Averill, B.A.
Isolation of a high specific activity pink, monomeric nitrous oxide reductase from Achromobacter cycloclastes
Biochem. Biophys. Res. Commun.
166
729-735
1990
Achromobacter cycloclastes
Manually annotated by BRENDA team
Bonin, P.; Gilewicz, M.; Bertrand, J.C.
Effects of oxygen on each step of denitrification on Pseudomonas nautica
Can. J. Microbiol.
35
1061-1064
1989
Marinobacter nauticus
-
Manually annotated by BRENDA team
Teraguchi, S.; Hollocher, T.C.
Purification and some characteristics of a cytochrome c-containing nitrous oxide reductase from Wolinella succinogenes
J. Biol. Chem.
264
1972-1979
1989
BRENDA: Wolinella succinogenes
Textmining: Bacteria
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Viebrock, A.; Zumft, W.G.
Molecular cloning, heterologous expression, and primary structure of the structural gene for the copper enzyme nitrous oxide reductase from denitrifying Pseudomonas stutzeri
J. Bacteriol.
170
4658-4668
1988
BRENDA: Pseudomonas stutzeri
Textmining: Escherichia coli
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Coyne, M.S.; Focht, D.D.
Nitrous oxide reduction in nodules: denitrification or N2 fixation ?
Appl. Environ. Microbiol.
53
1168-1170
1987
BRENDA: Rhizobium sp., Rhizobium sp. 8A55
Textmining: Rhizobium
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Snyder, S.W.; Hollocher, T.G.
Purification and some characteristics of nitrous oxide reductase from Paracoccus denitrificans
J. Biol. Chem.
262
6515-6525
1987
BRENDA: Paracoccus denitrificans
Textmining: Pseudomonas stutzeri, Cereibacter sphaeroides, denitrifying bacterium
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Kucera, I.; Boublikova, P.; Dadak, V.
Amperometric assay of activity and pH-optimum of N2O-reductase of Paracoccus denitrificans
Collect. Czech. Chem. Commun.
49
2709-2712
1984
Paracoccus denitrificans
-
Manually annotated by BRENDA team
Michalski, W.P.; Hein, D.H.; Nicholas, D.J.D.
Purification and characterization of nitrous oxide reductase from Rhodopseudomonas sphaeroides f.sp. denitrificans
Biochim. Biophys. Acta
872
50-60
1986
Cereibacter sphaeroides
-
Manually annotated by BRENDA team
Coyle, C.L.; Zumft, W.G.; Kroneck, P.M.H.; Krner, H.; Jakob, W.
Nitrous oxide reductase from denitrifying Pseudomonas perfectomarina. Purification and properties of a novel multicopper enzyme
Eur. J. Biochem.
153
459-467
1985
BRENDA: Pseudomonas stutzeri
Textmining: Dialysis, Electron, denitrifying bacterium
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
McEwan, A.G.; Greenfield, A.J.; Wetzstein, H.G.; Jackson, J.B.; Ferguson, S.J.
Nitrous oxide reduction by members of the family Rhodospirillaceae and the nitrous oxide reductase of Rhodopseudomonas capsulata
J. Bacteriol.
164
823-830
1985
BRENDA: Rhodobacter capsulatus, Cereibacter sphaeroides, Rhodopseudomonas palustris, Rhodospirillum rubrum, Rhodospirillum rubrum S1, Rhodopseudomonas palustris PW5
Textmining: Rhodospirillaceae, Pseudomonas stutzeri, Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Snyder, S.W.; Hollocher, T.C.
Nitrous oxide reductase and the 120,000 MW copper protein of N2-producing denitrifying bacteria are different entities
Biochem. Biophys. Res. Commun.
119
588-592
1984
BRENDA: Paracoccus denitrificans, Pseudomonas denitrificans (nom. rej.), Pseudomonas stutzeri
Textmining: Bacteria
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Aida, T.; Hata, S.; Kusunoki, H.
Temporary low oxygen conditions for the formation of nitrate reductase and nitrous oxide reductase by denitrifying Pseudomonas sp. G59
Can. J. Microbiol.
32
543-547
1986
Pseudomonas sp., Pseudomonas sp. G59
Manually annotated by BRENDA team
Zumft, W.G.; Matsubara, T.
A novel kind of multi-copper protein as terminal oxidoreductase of nitrous oxide respiration in Pseudomonas perfectomarinus
FEBS Lett.
148
107-112
1982
Pseudomonas stutzeri
-
Manually annotated by BRENDA team
Matsubara, T.; Zumft, W.G.
Identification of a copper protein as part of the nitrous oxide-reducing system in nitrite-respiring (denitrifying) Pseudomonads
Arch. Microbiol.
132
322-328
1982
Pseudomonas fluorescens
-
Manually annotated by BRENDA team
Kristjansson, J.K.; Hollocher, T.C.
Partial purification and characterization of nitrous oxide reductase from Paracoccus denitrificans
Curr. Microbiol.
6
247-251
1981
Paracoccus denitrificans
-
Manually annotated by BRENDA team
Kristjansson, J.K.; Hollocher, T.C.
First practical assay for soluble nitrous oxide reductase of denitrifying bacteria and a partial kinetic characterization
J. Biol. Chem.
255
704-707
1980
BRENDA: Paracoccus denitrificans
Textmining: Bacteria
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Velasco, L.; Mesa, S.; Xu, C.A.; Delgado, M.J.; Bedmar, E.J.
Molecular characterization of nosRZDFYLX genes coding for denitrifying nitrous oxide reductase of Bradyrhizobium japonicum
Antonie van Leeuwenhoek
85
229-235
2004
Bradyrhizobium japonicum (Q89XJ6), Bradyrhizobium japonicum
Manually annotated by BRENDA team
Chan, J.M.; Bollinger, J.A.; Grewell, C.L.; Dooley, D.M.
Reductively activated nitrous oxide reductase reacts directly with Substrate
J. Am. Chem. Soc.
126
3030-3031
2004
Achromobacter cycloclastes
Manually annotated by BRENDA team
Yamaguchi, K.; Kawamura, A.; Ogawa, H.; Suzuki, S.
Characterization of nitrous oxide reductase from a methylotrophic denitrifying bacterium, Hyphomicrobium denitrificans A3151
J. Biochem.
134
853-858
2003
BRENDA: Hyphomicrobium denitrificans, Hyphomicrobium denitrificans A3151
Textmining: denitrifying bacterium, Avian myeloblastosis virus
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Arai, H.; Mizutani, M.; Igarashi, Y.
Transcriptional regulation of the nos genes for nitrous oxide reductase in Pseudomonas aeruginosa
Microbiology
149
29-36
2003
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Mattila, K.; Haltia, T.
How does nitrous oxide reductase interact with its electron donors?--A docking study
Proteins
59
708-722
2005
BRENDA: Cereibacter sphaeroides, Paracoccus denitrificans (Q51705)
Textmining: Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
SooHoo, C.K.; Hollocher, T.C.
Purification and characterization of nitrous oxide reductase from Pseudomonas aeruginosa strain P2
J. Biol. Chem.
266
2203-2209
1991
Pseudomonas aeruginosa, Pseudomonas aeruginosa P2
Manually annotated by BRENDA team
Horn, M.A.; Drake, H.L.; Schramm, A.
Nitrous oxide reductase genes (nosZ) of denitrifying microbial populations in soil and the earthworm gut are phylogenetically similar
Appl. Environ. Microbiol.
72
1019-1026
2006
BRENDA: Pseudomonas sp., Dechloromonas denitrificans, Flavobacterium denitrificans, Pseudomonas sp. ED3
Textmining: Metaphire sieboldi, Brucella, Flavobacterium, Pseudomonas, Bradyrhizobium, Sinorhizobium, Ralstonia, earthworms, Dechloromonas
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Sameshima-Saito, R.; Chiba, K.; Hirayama, J.; Itakura, M.; Mitsui, H.; Eda, S.; Minamisawa, K.
Symbiotic Bradyrhizobium japonicum reduces N2O surrounding the soybean root system via nitrous oxide reductase
Appl. Environ. Microbiol.
72
2526-2532
2006
BRENDA: Bradyrhizobium japonicum, Bradyrhizobium japonicum USDA 110
Textmining: Glycine max
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Henry, S.; Bru, D.; Stres, B.; Hallet, S.; Philippot, L.
Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
Appl. Environ. Microbiol.
72
5181-5189
2006
BRENDA: Achromobacter cycloclastes, Alcaligenes faecalis, Bradyrhizobium japonicum, Pseudomonas denitrificans (nom. rej.), Sinorhizobium meliloti, Hyphomicrobium denitrificans, Ensifer adhaerens, Pseudomonas fluorescens (Q9F0W4), Pseudomonas denitrificans (nom. rej.) CCUG 2519, Pseudomonas fluorescens C7R12 (Q9F0W4), Sinorhizobium meliloti 50, Ensifer adhaerens SN611
Textmining: Bacteria, plant
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Taubner, L.M.; McGuirl, M.A.; Dooley, D.M.; Copie, V.
Structural studies of Apo NosL, an accessory protein of the nitrous oxide reductase system: insights from structural homology with MerB, a mercury resistance protein
Biochemistry
45
12240-12252
2006
Achromobacter cycloclastes
Manually annotated by BRENDA team
Rasmussen, T.; Brittain, T.; Berks, B.C.; Watmough, N.J.; Thomson, A.J.
Formation of a cytochrome c-nitrous oxide reductase complex is obligatory for N2O reduction by Paracoccus pantotrophus
Dalton Trans.
2005
3501-3506
2005
BRENDA: Paracoccus pantotrophus
Textmining: Equus caballus, Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Wunsch, P.; Koerner, H.; Neese, F.; van Spanning, R.J.; Kroneck, P.M.; Zumft, W.G.
NosX function connects to nitrous oxide (N2O) reduction by affecting the Cu(Z) center of NosZ and its activity in vivo
FEBS Lett.
579
4605-4609
2005
Paracoccus denitrificans
Manually annotated by BRENDA team
Gorelsky, S.I.; Ghosh, S.; Solomon, E.I.
Mechanism of N2O reduction by the mu4-S tetranuclear CuZ cluster of nitrous oxide reductase
J. Am. Chem. Soc.
128
278-290
2006
Pseudomonas sp.
Manually annotated by BRENDA team
Paraskevopoulos, K.; Antonyuk, S.V.; Sawers, R.G.; Eady, R.R.; Hasnain, S.S.
Insight into catalysis of nitrous oxide reductase from high-resolution structures of resting and inhibitor-bound enzyme from Achromobacter cycloclastes
J. Mol. Biol.
362
55-65
2006
Achromobacter cycloclastes (P94127), Achromobacter cycloclastes, Achromobacter cycloclastes 1013 (P94127)
Manually annotated by BRENDA team
Kern, M.; Simon, J.
Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria
Biochim. Biophys. Acta
1787
646-656
2009
Epsilonproteobacteria
Automatic Mining of ENzyme DAta
Fujita, K.; Dooley, D.M.
Insights into the mechanism of N2O reduction by reductively activated N2O reductase from kinetics and spectroscopic studies of pH effects
Inorg. Chem.
46
613-615
2007
Achromobacter cycloclastes (P94127), Achromobacter cycloclastes
Manually annotated by BRENDA team
Ghosh, S.; Gorelsky, S.I.; George, S.D.; Chan, J.M.; Cabrito, I.; Dooley, D.M.; Moura, J.J.; Moura, I.; Solomon, E.I.
Spectroscopic, computational, and kinetic studies of the mu4-sulfide-bridged tetranuclear CuZ cluster in N2O reductase: pH effect on the edge ligand and its contribution to reactivity
J. Am. Chem. Soc.
129
3955-3965
2007
BRENDA: Achromobacter cycloclastes (P94127), Achromobacter cycloclastes, Marinobacter nauticus (Q19Q69)
Textmining: Marinobacter hydrocarbonoclasticus
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Fujita, K.; Chan, J.M.; Bollinger, J.A.; Alvarez, M.L.; Dooley, D.M.
Anaerobic purification, characterization and preliminary mechanistic study of recombinant nitrous oxide reductase from Achromobacter cycloclastes
J. Inorg. Biochem.
101
1836-1844
2007
Achromobacter cycloclastes (P94127), Achromobacter cycloclastes, Achromobacter cycloclastes IAM1013 (P94127)
Manually annotated by BRENDA team
Bingham, S.J.; Rasmussen, T.; Farrar, J.; Wolverson, D.; Thomson, A.J.
Magnetic circular dichroism anisotropy of the CuA centre of nitrous oxide reductase from coherent Raman detected electron spin resonance spectroscopy
Mol. Phys.
105
2169-2176
2007
Paracoccus pantotrophus
-
Manually annotated by BRENDA team
Savelieff, M.G.; Wilson, T.D.; Elias, Y.; Nilges, M.J.; Garner, D.K.; Lu, Y.
Experimental evidence for a link among cupredoxins: red, blue, and purple copper transformations in nitrous oxide reductase
Proc. Natl. Acad. Sci. USA
105
7919-7924
2008
BRENDA: Paracoccus denitrificans (Q51705), Paracoccus denitrificans
Textmining: Transformation
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Fernandes, A.T.; Damas, J.M.; Todorovic, S.; Huber, R.; Baratto, M.C.; Pogni, R.; Soares, C.M.; Martins, L.O.
The multicopper oxidase from the archaeon Pyrobaculum aerophilum shows nitrous oxide reductase activity
FEBS J.
277
3176-3189
2010
BRENDA: Pyrobaculum aerophilum
Textmining: archaeon
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Ertem, M.Z.; Cramer, C.J.; Himo, F.; Siegbahn, P.E.
N-O bond cleavage mechanism(s) in nitrous oxide reductase
J. Biol. Inorg. Chem.
17
687-698
2012
BRENDA: Paracoccus denitrificans (Q51705)
Textmining: Lycaeninae
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Fujita, K.; Hirasawa-Fujita, M.; Brown, D.E.; Obara, Y.; Ijima, F.; Kohzuma, T.; Dooley, D.M.
Direct electron transfer from pseudoazurin to nitrous oxide reductase in catalytic N2O reduction
J. Inorg. Biochem.
115
163-173
2012
BRENDA: Achromobacter cycloclastes (P94127), Achromobacter cycloclastes
Textmining: Electron, Tharsalea heteronea
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
DellAcqua, S.; Pauleta, S.; Moura, J.; Moura, I.
Biochemical characterization of the purple form of Marinobacter hydrocarbonoclasticus nitrous oxide reductase
Philos. Trans. R. Soc. Lond. B Biol. Sci.
367
1204-1212
2012
BRENDA: Marinobacter nauticus
Textmining: Marinobacter hydrocarbonoclasticus
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Wan, S.; Mottiar, Y.; Johnson, A.M.; Goto, K.; Altosaar, I.
Expression of the nos operon proteins from Pseudomonas stutzeri in transgenic plants to assemble nitrous oxide reductase
Transgenic Res.
21
593-603
2012
BRENDA: Pseudomonas stutzeri (P19573), Pseudomonas stutzeri, Pseudomonas stutzeri ATCC 14405 (P19573)
Textmining: Bacteria, plant
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Feng, L.; Wang, W.; Cheng, J.; Ren, Y.; Zhao, G.; Gao, C.; Tang, Y.; Liu, X.; Han, W.; Peng, X.; Liu, R.; Wang, L.
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
Proc. Natl. Acad. Sci. USA
104
5602-5607
2007
Firmicutes
Automatic Mining of ENzyme DAta
Wyman, M.; Hodgson, S.; Bird, C.
Denitrifying alphaproteobacteria from the Arabian Sea that express nosZ, the gene encoding nitrous oxide reductase, in oxic and suboxic waters
Appl. Environ. Microbiol.
79
2670-2681
2013
BRENDA: Trichodesmium erythraeum, alpha proteobacterium 4N (H9A6G9), uncultured Alphaproteobacteria bacterium (M1QGM4), Trichodesmium erythraeum IMS01
Textmining: Alphaproteobacteria, Cyanobacteria, Trichodesmium, Labrenzia
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Zhang, L.; Zeng, G.; Zhang, J.; Chen, Y.; Yu, M.; Lu, L.; Li, H.; Zhu, Y.; Yuan, Y.; Huang, A.; He, L.
Response of denitrifying genes coding for nitrite (nirK or nirS) and nitrous oxide (nosZ) reductases to different physico-chemical parameters during agricultural waste composting
Appl. Microbiol. Biotechnol.
99
4059-4070
2015
uncultured bacterium
Manually annotated by BRENDA team
Schneider, L.K.; Einsle, O.
Role of calcium in secondary structure stabilization during maturation of nitrous oxide reductase
Biochemistry
55
1433-1440
2016
BRENDA: Shewanella denitrificans (Q12M27), Shewanella denitrificans, Shewanella denitrificans OS217 (Q12M27)
Textmining: insertion sequences
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Johnston, E.M.; DellAcqua, S.; Pauleta, S.R.; Moura, I.; Solomon, E.I.
Protonation state of the Cu4S2 CuZ site in nitrous oxide reductase redox dependence and insight into reactivity
Chem. Sci.
6
5670-5679
2015
Paracoccus pantotrophus, Pseudomonas stutzeri
Manually annotated by BRENDA team
Sanchez, C.; Itakura, M.; Okubo, T.; Matsumoto, T.; Yoshikawa, H.; Gotoh, A.; Hidaka, M.; Uchida, T.; Minamisawa, K.
The nitrate-sensing NasST system regulates nitrous oxide reductase and periplasmic nitrate reductase in Bradyrhizobium japonicum
Environ. Microbiol.
16
3263-3274
2014
Bradyrhizobium japonicum, Bradyrhizobium japonicum (Q89EN5), Bacteria, Glycine max
Automatic Mining of ENzyme DAta
Qu, Z.; Bakken, L.R.; Molstad, L.; Frostegard, A.; Bergaust, L.L.
Transcriptional and metabolic regulation of denitrification in Paracoccus denitrificans allows low but significant activity of nitrous oxide reductase under oxic conditions
Environ. Microbiol.
18
2951-2963
2016
Paracoccus denitrificans
Manually annotated by BRENDA team
Sanchez, C.; Mitsui, H.; Minamisawa, K.
Regulation of nitrous oxide reductase genes by NasT-mediated transcription antitermination in Bradyrhizobium diazoefficiens
Environ. Microbiol. Rep.
9
389-396
2017
Bradyrhizobium diazoefficiens (Q89XJ6), Bradyrhizobium diazoefficiens
Manually annotated by BRENDA team
Johnston, E.M.; Carreira, C.; DellAcqua, S.; Dey, S.G.; Pauleta, S.R.; Moura, I.; Solomon, E.I.
Spectroscopic definition of the CuZ* intermediate in turnover of nitrous oxide reductase and molecular insight into the catalytic mechanism
J. Am. Chem. Soc.
139
4462-4476
2017
BRENDA: Marinobacter nauticus (Q19Q69), Marinobacter nauticus 617 (Q19Q69)
Textmining: Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Park, D.; Kim, H.; Yoon, S.
Nitrous oxide reduction by an obligate aerobic bacterium, Gemmatimonas aurantiaca strain T-27
Appl. Environ. Microbiol.
83
e00502-17
2017
Gemmatimonas aurantiaca, Gemmatimonas aurantiaca T-27
Manually annotated by BRENDA team
Bagherzadeh, S.; Mankad, N.P.
Oxidation of a [Cu2S] complex by N2O and CO2 insights into a role of tetranuclearity in the CuZ site of nitrous oxide reductase
Chem. Commun. (Camb.)
54
1097-1100
2018
uncultured bacterium
Manually annotated by BRENDA team
Zhang, L.; Bill, E.; Kroneck, P.M.H.; Einsle, O.
Histidine-gated proton-coupled electron transfer to the CuA site of nitrous oxide reductase
J. Am. Chem. Soc.
143
830-838
2021
BRENDA: Stutzerimonas stutzeri (P19573)
Textmining: Electron, Pseudomonas stutzeri
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Kroneck, P.M.H.
Walking the seven lines binuclear copper A in cytochrome c oxidase and nitrous oxide reductase
J. Biol. Inorg. Chem.
23
27-39
2018
Stutzerimonas stutzeri (P19573)
Manually annotated by BRENDA team
Carreira, C.; Nunes, R.F.; Mestre, O.; Moura, I.; Pauleta, S.R.
The effect of pH on Marinobacter hydrocarbonoclasticus denitrification pathway and nitrous oxide reductase
J. Biol. Inorg. Chem.
25
927-940
2020
BRENDA: Marinobacter nauticus
Textmining: Marinobacter hydrocarbonoclasticus
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Carreira, C.; Pauleta, S.R.; Moura, I.
The catalytic cycle of nitrous oxide reductase - The enzyme that catalyzes the last step of denitrification
J. Inorg. Biochem.
177
423-434
2017
BRENDA: Stutzerimonas stutzeri (P19573), Paracoccus denitrificans (Q51705)
Textmining: Electron
Manually annotated by BRENDA teamAutomatic Mining of ENzyme DAta
Pauleta, S.R.; Carepo, M.S.P.; Moura, I.
The tetranuclear copper-sulfide center of nitrous oxide reductase
Met. Ions Life Sci.
20
139-164
2020
Wolinella succinogenes, Stutzerimonas stutzeri (P19573), Paracoccus denitrificans (Q51705), Wolinella succinogenes DSM 1740, Paracoccus denitrificans Pd1222 (Q51705)
Manually annotated by BRENDA team
Antonyuk, SV; Eady, RR; Strange, RW; Hasnain, SS
The structure of glyceraldehyde 3-phosphate dehydrogenase from Alcaligenes xylosoxidans at 1.7 A resolution.
Acta Crystallogr D Biol Crystallogr
59
835-42
2003
Achromobacter xylosoxidans
Automatic Mining of ENzyme DAta
Honisch, U; Zumft, WG
Operon structure and regulation of the nos gene region of Pseudomonas stutzeri, encoding an ABC-Type ATPase for maturation of nitrous oxide reductase.
J Bacteriol
185
1895-902
2003
Pseudomonas stutzeri, insertion sequences
Automatic Mining of ENzyme DAta
Jüngst, A; Braun, C; Zumft, WG
Close linkage in Pseudomonas stutzeri of the structural genes for respiratory nitrite reductase and nitrous oxide reductase, and other essential genes for denitrification.
Mol Gen Genet
225
241-8
1991
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Saunders, NF; Houben, EN; Koefoed, S; de Weert, S; Reijnders, WN; Westerhoff, HV; De Boer, AP; Van Spanning, RJ
Transcription regulation of the nir gene cluster encoding nitrite reductase of Paracoccus denitrificans involves NNR and NirI, a novel type of membrane protein.
Mol Microbiol
34
24-36
1999
Pseudomonas stutzeri, Sinorhizobium meliloti
Automatic Mining of ENzyme DAta
Brambilla, S; Soto, G; Odorizzi, A; Arolfo, V; McCormick, W; Primo, E; Giordano, W; Jozefkowicz, C; Ayub, N
Spontaneous Mutations in the Nitrate Reductase Gene napC Drive the Emergence of Eco-friendly Low-N2O-Emitting Alfalfa Rhizobia in Regions with Different Climates.
Microb Ecol
2019
Medicago sativa, Sinorhizobium meliloti, Sinorhizobium meliloti 1021
Automatic Mining of ENzyme DAta
Zumft, WG; Dreusch, A; Löchelt, S; Cuypers, H; Friedrich, B; Schneider, B
Derived amino acid sequences of the nosZ gene (respiratory N2O reductase) from Alcaligenes eutrophus, Pseudomonas aeruginosa and Pseudomonas stutzeri reveal potential copper-binding residues. Implications for the CuA site of N2O reductase and cytochrome-c oxidase.
Eur J Biochem
208
31-40
1992
Pseudomonas aeruginosa, Pseudomonas stutzeri, Cupriavidus necator
Automatic Mining of ENzyme DAta
Körner, H; Mayer, F
Periplasmic location of nitrous oxide reductase and its apoform in denitrifying Pseudomonas stutzeri.
Arch Microbiol
157
218-22
1992
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Zhang, C; Jones, AM; Hollocher, TC
An apparently allosteric effect involving N2O with the nitrous oxide reductase from Wolinella succinogenes.
Biochem Biophys Res Commun
187
135-9
1992
Wolinella succinogenes
Automatic Mining of ENzyme DAta
Cuypers, H; Viebrock-Sambale, A; Zumft, WG
NosR, a membrane-bound regulatory component necessary for expression of nitrous oxide reductase in denitrifying Pseudomonas stutzeri.
J Bacteriol
174
5332-9
1992
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Richardson, DJ; Bell, LC; McEwan, AG; Jackson, JB; Ferguson, SJ
Cytochrome c2 is essential for electron transfer to nitrous oxide reductase from physiological substrates in Rhodobacter capsulatus and can act as an electron donor to the reductase in vitro. Correlation with photoinhibition studies.
Eur J Biochem
199
677-83
1991
Rhodobacter capsulatus, Electron
Automatic Mining of ENzyme DAta
Zhang, CS; Hollocher, TC; Kolodziej, AF; Orme-Johnson, WH
Electron paramagnetic resonance observations on the cytochrome c-containing nitrous oxide reductase from Wolinella succinogenes.
J Biol Chem
266
2199-202
1991
Wolinella succinogenes, Electron
Automatic Mining of ENzyme DAta
SooHoo, CK; Hollocher, TC; Kolodziej, AF; Orme-Johnson, WH; Bunker, G
Extended x-ray absorption fine structure and electron paramagnetic resonance of nitrous oxide reductase from Pseudomonas aeruginosa strain P2.
J Biol Chem
266
2210-8
1991
Pseudomonas aeruginosa, Electron
Automatic Mining of ENzyme DAta
Lee, HS; Abdelal, AH; Clark, MA; Ingraham, JL
Molecular characterization of nosA, a Pseudomonas stutzeri gene encoding an outer membrane protein required to make copper-containing N2O reductase.
J Bacteriol
173
5406-13
1991
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
SooHoo, CK; Hollocher, TC
Loss of nitrous oxide reductase in Pseudomonas aeruginosa cultured under N2O as determined by rocket immunoelectrophoresis.
Appl Environ Microbiol
56
3591-2
1990
Pseudomonas aeruginosa
Automatic Mining of ENzyme DAta
Zumft, WG; Viebrock-Sambale, A; Braun, C
Nitrous oxide reductase from denitrifying Pseudomonas stutzeri. Genes for copper-processing and properties of the deduced products, including a new member of the family of ATP/GTP-binding proteins.
Eur J Biochem
192
591-9
1990
Pseudomonas stutzeri, denitrifying bacterium
Automatic Mining of ENzyme DAta
Lee, HS; Hancock, RE; Ingraham, JL
Properties of a Pseudomonas stutzeri outer membrane channel-forming protein (NosA) required for production of copper-containing N2O reductase.
J Bacteriol
171
2096-100
1989
Pseudomonas stutzeri, Pseudomonas aeruginosa, Pseudomonas mendocina, Pseudomonas alcaligenes
Automatic Mining of ENzyme DAta
Riester, J; Zumft, WG; Kroneck, PM
Nitrous oxide reductase from Pseudomonas stutzeri. Redox properties and spectroscopic characterization of different forms of the multicopper enzyme.
Eur J Biochem
178
751-62
1989
Pseudomonas stutzeri, transposons
Automatic Mining of ENzyme DAta
Scott, RA; Zumft, WG; Coyle, CL; Dooley, DM
Pseudomonas stutzeri N2O reductase contains CuA-type sites.
Proc Natl Acad Sci U S A
86
4082-6
1989
Pseudomonas stutzeri, Bacteria
Automatic Mining of ENzyme DAta
Kroneck, PM; Antholine, WA; Riester, J; Zumft, WG
The cupric site in nitrous oxide reductase contains a mixed-valence [Cu(II),Cu(I)] binuclear center: a multifrequency electron paramagnetic resonance investigation.
FEBS Lett
242
70-4
1988
Electron, Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Snyder, SW; Bazylinski, DA; Hollocher, TC
Loss of N2O reductase activity as an explanation for poor growth of Pseudomonas aeruginosa on N2O.
Appl Environ Microbiol
53
2045-9
1987
Pseudomonas aeruginosa, Bacteria, Paracoccus denitrificans
Automatic Mining of ENzyme DAta
Mokhele, K; Tang, YJ; Clark, MA; Ingraham, JL
A Pseudomonas stutzeri outer membrane protein inserts copper into N2O reductase.
J Bacteriol
169
5721-6
1987
Pseudomonas stutzeri, Electron
Automatic Mining of ENzyme DAta
Cuypers, H; Berghöfer, J; Zumft, WG
Multiple nosZ promoters and anaerobic expression of nos genes necessary for Pseudomonas stutzeri nitrous oxide reductase and assembly of its copper centers.
Biochim Biophys Acta
1264
183-90
1995
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Mukonoweshuro, C; Hollocher, TC
A diffusion-controlled step in the catalytic cycle of nitrous oxide reductase from Wolinella succinogenes.
Arch Biochem Biophys
306
195-9
1993
Wolinella succinogenes
Automatic Mining of ENzyme DAta
Hoeren, FU; Berks, BC; Ferguson, SJ; McCarthy, JE
Sequence and expression of the gene encoding the respiratory nitrous-oxide reductase from Paracoccus denitrificans. New and conserved structural and regulatory motifs.
Eur J Biochem
218
49-57
1993
Paracoccus denitrificans, Paracoccus pantotrophus, Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Chan, YK; Wheatcroft, R
Detection of a nitrous oxide reductase structural gene in Rhizobium meliloti strains and its location on the nod megaplasmid of JJ1c10 and SU47.
J Bacteriol
175
19-26
1993
Agrobacterium tumefaciens, Bacteria, Cupriavidus necator, Pseudomonas, Pseudomonas stutzeri, Sinorhizobium meliloti
Automatic Mining of ENzyme DAta
Pfenninger, S; Antholine, WE; Barr, ME; Hyde, JS; Kroneck, PM; Zumft, WG
Electron spin-lattice relaxation of the [Cu(1.5) ... Cu(1.5)] dinuclear copper center in nitrous oxide reductase.
Biophys J
69
2761-9
1995
Electron, Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Dreusch, A; Bürgisser, DM; Heizmann, CW; Zumft, WG
Lack of copper insertion into unprocessed cytoplasmic nitrous oxide reductase generated by an R20D substitution in the arginine consensus motif of the signal peptide.
Biochim Biophys Acta
1319
311-8
1997
insertion sequences, Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Holz, RC; Alvarez, ML; Zumft, WG; Dooley, DM
1H NMR studies on the CuA center of nitrous oxide reductase from Pseudomonas stutzeri.
Biochemistry
38
11164-71
1999
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Charnock, JM; Dreusch, A; Körner, H; Neese, F; Nelson, J; Kannt, A; Michel, H; Garner, CD; Kroneck, PM; Zumft, WG
Structural investigations of the CuA centre of nitrous oxide reductase from Pseudomonas stutzeri by site-directed mutagenesis and X-ray absorption spectroscopy.
Eur J Biochem
267
1368-81
2000
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Jafferji, A; Sami, M; Nuttall, J; Ferguson, SJ; Berks, BC; Fülöp, V
Crystallization and preliminary X-ray analysis of nitrous oxide reductase from Paracoccus pantotrophus.
Acta Crystallogr D Biol Crystallogr
56 ( Pt 5)
653-5
2000
Paracoccus pantotrophus
Automatic Mining of ENzyme DAta
Saunders, NF; Hornberg, JJ; Reijnders, WN; Westerhoff, HV; de Vries, S; van Spanning, RJ
The NosX and NirX proteins of Paracoccus denitrificans are functional homologues: their role in maturation of nitrous oxide reductase.
J Bacteriol
182
5211-7
2000
Paracoccus denitrificans, Electron
Automatic Mining of ENzyme DAta
Heikkilä, MP; Honisch, U; Wunsch, P; Zumft, WG
Role of the Tat ransport system in nitrous oxide reductase translocation and cytochrome cd1 biosynthesis in Pseudomonas stutzeri.
J Bacteriol
183
1663-71
2001
Pseudomonas stutzeri, Electron
Automatic Mining of ENzyme DAta
Wunsch, P; Herb, M; Wieland, H; Schiek, UM; Zumft, WG
Requirements for Cu(A) and Cu-S center assembly of nitrous oxide reductase deduced from complete periplasmic enzyme maturation in the nondenitrifier Pseudomonas putida.
J Bacteriol
185
887-96
2003
Pseudomonas putida
Automatic Mining of ENzyme DAta
Noda, N; Kaneko, N; Mikami, M; Kimochi, Y; Tsuneda, S; Hirata, A; Mizuochi, M; Inamori, Y
Effects of SRT and DO on N2O reductase activity in an anoxic-oxic activated sludge system.
Water Sci Technol
48
363-70
2003
activated sludge metagenome
Automatic Mining of ENzyme DAta
Taubner, LM; McGuirl, MA; Dooley, DM; Copié, V
1H, 13C, 15N backbone and sidechain resonance assignments of apo-NosL, a novel copper(I) binding protein from the nitrous oxide reductase gene cluster of Achromobacter cycloclastes.
J Biomol NMR
29
211-2
2004
Achromobacter cycloclastes
Automatic Mining of ENzyme DAta
Simon, J; Einsle, O; Kroneck, PM; Zumft, WG
The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer pathway to cytochrome c nitrous oxide reductase.
FEBS Lett
569
7-12
2004
Wolinella succinogenes, Electron
Automatic Mining of ENzyme DAta
Dell'acqua, S; Pauleta, SR; Monzani, E; Pereira, AS; Casella, L; Moura, JJ; Moura, I
Electron transfer complex between nitrous oxide reductase and cytochrome c552 from Pseudomonas nautica: kinetic, nuclear magnetic resonance, and docking studies.
Biochemistry
47
10852-62
2008
Marinobacter hydrocarbonoclasticus, Electron
Automatic Mining of ENzyme DAta
Itakura, M; Tabata, K; Eda, S; Mitsui, H; Murakami, K; Yasuda, J; Minamisawa, K
Generation of Bradyrhizobium japonicum mutants with increased N2O reductase activity by selection after introduction of a mutated dnaQ gene.
Appl Environ Microbiol
74
7258-64
2008
Bradyrhizobium japonicum, plant
Automatic Mining of ENzyme DAta
Dell'acqua, S; Pauleta, SR; Paes de Sousa, PM; Monzani, E; Casella, L; Moura, JJ; Moura, I
A new CuZ active form in the catalytic reduction of N(2)O by nitrous oxide reductase from Pseudomonas nautica.
J Biol Inorg Chem
2010
Marinobacter hydrocarbonoclasticus, Electron
Automatic Mining of ENzyme DAta
Pomowski, A; Zumft, WG; Kroneck, PM; Einsle, O
Crystallization of purple nitrous oxide reductase from Pseudomonas stutzeri.
Acta Crystallogr Sect F Struct Biol Cryst Commun
66
1541-3
2010
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Dell'acqua, S; Moura, I; Moura, JJ; Pauleta, SR
The electron transfer complex between nitrous oxide reductase and its electron donors.
J Biol Inorg Chem
2011
Electron, Achromobacter cycloclastes, Paracoccus denitrificans, Wolinella succinogenes, Marinobacter hydrocarbonoclasticus
Automatic Mining of ENzyme DAta
Bergaust, L; van Spanning, RJ; Frostegrd, A; Bakken, LR
Expression of nitrous oxide reductase in Paracoccus denitrificans is regulated by oxygen and nitric oxide through FnrP and NNR.
Microbiology
158
826-34
2012
Paracoccus denitrificans
Automatic Mining of ENzyme DAta
Wan, S; Johnson, AM; Altosaar, I
Expression of nitrous oxide reductase from Pseudomonas stutzeri in transgenic tobacco roots using the root-specific rolD promoter from Agrobacterium rhizogenes.
Ecol Evol
2
286-97
2012
Agrobacterium rhizogenes, Nicotiana tabacum, plant, Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Wang, XJ; Chen, SH; Zhang, ZJ; Xiao, JC
[Denitrifying bacteria of constructed wetland system based on nitrous oxide reductase gene (nosZ)].
Huan Jing Ke Xue
33
1306-12
2012
Bacteria, Hyphomicrobiales, Burkholderiales
Automatic Mining of ENzyme DAta
Jung, J; Choi, S; Jung, H; Scow, KM; Park, W
Primers for amplification of nitrous oxide reductase genes associated with Firmicutes and Bacteroidetes in organic-compound-rich soils.
Microbiology
159
307-15
2013
Bacteroidetes, Firmicutes, Geobacillus, animal
Automatic Mining of ENzyme DAta
Zhang, C; Hollocher, TC
Interaction of dichloromethane (methylene chloride) with the nitrous oxide reductase from Wolinella succinogenes.
World J Microbiol Biotechnol
9
479-82
1993
Wolinella succinogenes
Automatic Mining of ENzyme DAta
Orellana, LH; Rodriguez-R, LM; Higgins, S; Chee-Sanford, JC; Sanford, RA; Ritalahti, KM; Lffler, FE; Konstantinidis, KT
Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.
MBio
5
e01193-14
2014
metagenomes, Anaeromyxobacter, Zea mays subsp. mays
Automatic Mining of ENzyme DAta
Iwasaki, H; Saigo, T; Matsubara, T
Copper as a controlling factor of anaerobic growth under N2O and biosynthesis of N2O reductase in denitrifying bacteria.
Plant Cell Physiol
21
1573-84
1980
Bacteria
Automatic Mining of ENzyme DAta
Shiina, Y; Itakura, M; Choi, H; Saeki, Y; Hayatsu, M; Minamisawa, K
Relationship Between Soil Type and N2O Reductase Genotype (nosZ) of Indigenous Soybean Bradyrhizobia: nosZ-minus Populations are Dominant in Andosols.
Microbes Environ
29
420-6
2014
Glycine max, Bradyrhizobium japonicum
Automatic Mining of ENzyme DAta
Brambilla, S; Frare, R; Soto, G; Jozefkowicz, C; Ayub, N
Absence of the Nitrous Oxide Reductase Gene Cluster in Commercial Alfalfa Inoculants Is Probably Due to the Extensive Loss of Genes During Rhizobial Domestication.
Microb Ecol
2018
Medicago sativa
Automatic Mining of ENzyme DAta
Wang, Y; Wang, Z; Duo, Y; Wang, X; Chen, J; Chen, J
Gene cloning, expression, and reducing property enhancement of nitrous oxide reductase from Alcaligenes denitrificans strain TB.
Environ Pollut
239
43-52
2018
Achromobacter denitrificans, Bacteria, Alcaligenes, Escherichia coli
Automatic Mining of ENzyme DAta
Wasai-Hara, S; Hara, S; Morikawa, T; Sugawara, M; Takami, H; Yoneda, J; Tokunaga, T; Minamisawa, K
Diversity of Bradyrhizobium in Non-Leguminous Sorghum Plants: B. ottawaense Isolates Unique in Genes for N2O Reductase and Lack of the Type VI Secretion System.
Microbes Environ
35
2020
Bradyrhizobium, Sorghum, Bradyrhizobium ottawaense, Bradyrhizobium japonicum, Glycine max, Bradyrhizobium diazoefficiens
Automatic Mining of ENzyme DAta
Carreira, C; Dos Santos, MMC; Pauleta, SR; Moura, I
Proton-coupled electron transfer mechanisms of the copper centres of nitrous oxide reductase from Marinobacter hydrocarbonoclasticus - An electrochemical study.
Bioelectrochemistry
133
107483
2020
Marinobacter hydrocarbonoclasticus, Electron
Automatic Mining of ENzyme DAta
Bennett, SP; Torres, MJ; Soriano-Laguna, MJ; Richardson, DJ; Gates, AJ; Le Brun, NE
nosX is essential for whole-cell N2O reduction in Paracoccus denitrificans but not for assembly of copper centres of nitrous oxide reductase.
Microbiology (Reading)
2020
Paracoccus denitrificans, Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Semedo, M; Wittorf, L; Hallin, S; Song, B
Differential expression of clade I and II N2O reductase genes in denitrifying Thauera linaloolentis 47LolT under different nitrogen conditions.
FEMS Microbiol Lett
367
2020
Thauera linaloolentis
Automatic Mining of ENzyme DAta
Torres, MJ; Avila, S; Bedmar, EJ; Delgado, MJ
Overexpression of the periplasmic nitrate reductase supports anaerobic growth by Ensifer meliloti.
FEMS Microbiol Lett
365
2018
bacterium
Automatic Mining of ENzyme DAta
Mather, MW; Springer, P; Fee, JA
Cytochrome oxidase genes from Thermus thermophilus. Nucleotide sequence and analysis of the deduced primary structure of subunit IIc of cytochrome caa3.
J Biol Chem
266
5025-35
1991
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Farrar, JA; Lappalainen, P; Zumft, WG; Saraste, M; Thomson, AJ
Spectroscopic and mutagenesis studies on the CuA centre from the cytochrome-c oxidase complex of Paracoccus denitrificans.
Eur J Biochem
232
294-303
1995
Bos taurus
Automatic Mining of ENzyme DAta
McGuirl, MA; Nelson, LK; Bollinger, JA; Chan, YK; Dooley, DM
The nos (nitrous oxide reductase) gene cluster from the soil bacterium Achromobacter cycloclastes: cloning, sequence analysis, and expression.
J Inorg Biochem
70
155-69
1998
Sinorhizobium meliloti, Bos taurus
Automatic Mining of ENzyme DAta
Liu, X; Gao, C; Zhang, A; Jin, P; Wang, L; Feng, L
The nos gene cluster from gram-positive bacterium Geobacillus thermodenitrificans NG80-2 and functional characterization of the recombinant NosZ.
FEMS Microbiol Lett
289
46-52
2008
Bacteria
Automatic Mining of ENzyme DAta
Snchez, C; Itakura, M; Mitsui, H; Minamisawa, K
Linked expressions of nap and nos genes in a Bradyrhizobium japonicum mutant with increased N(2)O reductase activity.
Appl Environ Microbiol
79
4178-80
2013
Bradyrhizobium japonicum, enrichment culture
Automatic Mining of ENzyme DAta
Loo, CY; Mitrakul, K; Jaafar, S; Gyurko, C; Hughes, CV; Ganeshkumar, N
Role of a nosX homolog in Streptococcus gordonii in aerobic growth and biofilm formation.
J Bacteriol
186
8193-206
2004
transposons, insertion sequences, Cupriavidus necator
Automatic Mining of ENzyme DAta
Cuypers, H; Zumft, WG
Anaerobic control of denitrification in Pseudomonas stutzeri escapes mutagenesis of an fnr-like gene.
J Bacteriol
175
7236-46
1993
Pseudomonas stutzeri, Bacteria, Pseudomonas aeruginosa, Escherichia coli, bacterium
Automatic Mining of ENzyme DAta
Borrero-de Acua, JM; Rohde, M; Wissing, J; Jnsch, L; Schobert, M; Molinari, G; Timmis, KN; Jahn, M; Jahn, D
The Protein Network of the Pseudomonas aeruginosa Denitrification Apparatus.
J Bacteriol
2016
Pseudomonas aeruginosa, Electron, bacterium
Automatic Mining of ENzyme DAta
Zumft, WG; Kroneck, PM
Respiratory transformation of nitrous oxide (N2O) to dinitrogen by Bacteria and Archaea.
Adv Microb Physiol
52
107-227
2007
Archaea, Electron, Paracoccus, Pseudomonas, Transformation, Wolinella succinogenes
Automatic Mining of ENzyme DAta
Boogerd, FC; Van Verseveld, HW; Stouthamer, AH
Respiration-driven proton translocation with nitrite and nitrous oxide in Paracoccus denitrificans.
Biochim Biophys Acta
638
181-91
1981
Electron
Automatic Mining of ENzyme DAta
Härtig, E; Zumft, WG
The requirement of RpoN (sigma factor sigma54) in denitrification by Pseudomonas stutzeri is indirect and restricted to the reduction of nitrite and nitric oxide.
Appl Environ Microbiol
64
3092-5
1998
bacterium
Automatic Mining of ENzyme DAta
Shrestha, NK; Hadano, S; Kamachi, T; Okura, I
Conversion of ammonia to dinitrogen in wastewater by Nitrosomonas europaea.
Appl Biochem Biotechnol
90
221-32
2001
Nitrosomonas europaea
Automatic Mining of ENzyme DAta
Barth, KR; Isabella, VM; Clark, VL
Biochemical and Genomic Analysis of the Denitrification Pathway within Neisseria species.
Microbiology
2009
Bacteria, Homo sapiens, Nataxa flavescens, Neisseria, Neisseria gonorrhoeae, Neisseria meningitidis, Neisseria mucosa, Neisseria sicca
Automatic Mining of ENzyme DAta
Green, SJ; Prakash, O; Gihring, TM; Akob, DM; Jasrotia, P; Jardine, PM; Watson, DB; Brown, SD; Palumbo, AV; Kostka, JE
Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination.
Appl Environ Microbiol
76
3244-54
2010
Bacteria, Hyphomicrobium, Afipia, Proteobacteria, Bacillus, Intrasporangium, Rhodanobacter, Phyla, Areas
Automatic Mining of ENzyme DAta
Luckmann, M; Mania, D; Kern, M; Bakken, LR; Frostegrd, A; Simon, J
Production and consumption of nitrous oxide in nitrate-ammonifying Wolinella succinogenes cells.
Microbiology
160
1749-59
2014
Electron, Wolinella succinogenes
Automatic Mining of ENzyme DAta
Wang, Y; Li, P; Zuo, J; Gong, Y; Wang, S; Shi, X; Zhang, M
Inhibition by free nitrous acid (FNA) and the electron competition of nitrite in nitrous oxide (N2O) reduction during hydrogenotrophic denitrification.
Chemosphere
213
1-10
2018
Electron
Automatic Mining of ENzyme DAta
Song, S; Wang, P; Liu, Y; Zhao, D; An, S
Effects of Oenanthe javanica on Nitrogen Removal in Free-Water Surface Constructed Wetlands under Low-Temperature Conditions.
Int J Environ Res Public Health
16
2019
Bacteria
Automatic Mining of ENzyme DAta
Cao, L; Yu, X; Liu, C; Liu, M; Chen, J; Qin, H; Liang, C; Xu, Q; Penttinen, P
Alteration of soil nitrifiers and denitrifiers and their driving factors during intensive management of Moso bamboo (Phyllostachys pubescens).
Sci Total Environ
705
135236
2020
Archaea
Automatic Mining of ENzyme DAta
Wang, M; Xie, X; Wang, M; Wu, J; Zhou, Q; Sun, Y
The bacterial microbiota in florfenicol contaminated soils: The antibiotic resistome and the nitrogen cycle.
Environ Pollut
259
113901
2020
Sphingomonadaceae
Automatic Mining of ENzyme DAta
Vitale, A; Paszti, S; Takahashi, K; Toyofuku, M; Pessi, G; Eberl, L
Mapping of the Denitrification Pathway in Burkholderia thailandensis by Genome-Wide Mutant Profiling.
J Bacteriol
2020
Burkholderia thailandensis, Burkholderia pseudomallei THE
Automatic Mining of ENzyme DAta
Zhou, J; Xing, J
Haloalkaliphilic denitrifiers-dependent sulfate-reducing bacteria thrive in nitrate-enriched environments.
Water Res
201
117354
2021
Bacteria
Automatic Mining of ENzyme DAta
Zhang, S; Liu, F; Luo, P; Xiao, R; Chen, J; Chen, L; Wu, J
Does rice straw application reduce N2O emissions from surface flow constructed wetlands for swine wastewater treatment?
Chemosphere
226
273-281
2019
Bacteria, Archaea
Automatic Mining of ENzyme DAta
Behrendt, U; Kmpfer, P; Glaeser, SP; Augustin, J; Ulrich, A
Characterisation of the N2O producing soil bacterium Rhizobium azooxidifex sp. nov.
Int J Syst Evol Microbiol
2016
bacterium, Rhizobium
Automatic Mining of ENzyme DAta
Jensen, KM; Cox, RP
Effects of sulfide and low redox potential on the inhibition of nitrous oxide reduction by acetylene in Pseudomonas nautica.
FEMS Microbiol Lett
75
13-7
1992
Marinobacter hydrocarbonoclasticus
Automatic Mining of ENzyme DAta
Bell, LC; Ferguson, SJ
Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha.
Biochem J
273(Pt 2)
423-7
1991
Paracoccus pantotrophus
Automatic Mining of ENzyme DAta
Kalkowski, I; Conrad, R
Metabolism of nitric oxide in denitrifying Pseudomonas aeruginosa and nitrate-respiring Bacillus cereus.
FEMS Microbiol Lett
66
107-11
1991
Pseudomonas aeruginosa, Bacillus cereus, Electron
Automatic Mining of ENzyme DAta
Viebrock, A; Zumft, WG
Physical mapping of transposon Tn5 insertions defines a gene cluster functional in nitrous oxide respiration by Pseudomonas stutzeri.
J Bacteriol
169
4577-80
1987
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Inatomi, K
Analysis of the nitrous oxide reduction genes, nosZDFYL, of Achromobacter cycloclastes.
DNA Res
5
365-71
1998
Achromobacter cycloclastes, denitrifying bacterium
Automatic Mining of ENzyme DAta
Wang, M; Qureshi, N; Soeurt, N; Splitter, G
High levels of nitric oxide production decrease early but increase late survival of Brucella abortus in macrophages.
Microb Pathog
31
221-30
2001
Brucella abortus, Brucella
Automatic Mining of ENzyme DAta
Sakano, Y; Pickering, KD; Strom, PF; Kerkhof, LJ
Spatial distribution of total, ammonia-oxidizing, and denitrifying bacteria in biological wastewater treatment reactors for bioregenerative life support.
Appl Environ Microbiol
68
2285-93
2002
Bacteria, Nitrosomonadales
Automatic Mining of ENzyme DAta
Delorme, S; Philippot, L; Edel-Hermann, V; Deulvot, C; Mougel, C; Lemanceau, P
Comparative genetic diversity of the narG, nosZ, and 16S rRNA genes in fluorescent pseudomonads.
Appl Environ Microbiol
69
1004-12
2003
Pseudomonas fluorescens group
Automatic Mining of ENzyme DAta
Rich, JJ; Heichen, RS; Bottomley, PJ; Cromack, K; Myrold, DD
Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils.
Appl Environ Microbiol
69
5974-82
2003
Bacteria
Automatic Mining of ENzyme DAta
Gómez-Villalba, B; Calvo, C; Vilchez, R; González-López, J; Rodelas, B
TGGE analysis of the diversity of ammonia-oxidizing and denitrifying bacteria in submerged filter biofilms for the treatment of urban wastewater.
Appl Microbiol Biotechnol
1-8
2006
Bacteria, Nitrosomonas, Nitrosomonas europaea, Nitrosomonas oligotropha
Automatic Mining of ENzyme DAta
Horn, MA; Mertel, R; Gehre, M; Kästner, M; Drake, HL
In vivo emission of dinitrogen by earthworms via denitrifying bacteria in the gut.
Appl Environ Microbiol
72
1013-8
2006
earthworms
Automatic Mining of ENzyme DAta
Larsen, LH; Revsbech, NP; Binnerup, SJ
A Microsensor for Nitrate Based on Immobilized Denitrifying Bacteria.
Appl Environ Microbiol
62
1248-1251
1996
Bacteria
Automatic Mining of ENzyme DAta
Bingham, SJ; Wolverson, D; Thomson, AJ
Coherent Raman detected electron spin resonance spectroscopy of metalloproteins: linking electron spin resonance and magnetic circular dichroism.
Biochem Soc Trans
36
1187-90
2008
Paracoccus pantotrophus
Automatic Mining of ENzyme DAta
Ruiz-Rueda, O; Hallin, S; Bañeras, L
Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland.
FEMS Microbiol Ecol
67
308-19
2009
Bacteria
Automatic Mining of ENzyme DAta
He, S; Kunin, V; Haynes, M; Martin, HG; Ivanova, N; Rohwer, F; Hugenholtz, P; McMahon, KD
Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge.
Environ Microbiol
2010
Candidatus Accumulibacter
Automatic Mining of ENzyme DAta
Bartacek, J; Manconi, I; Sansone, G; Murgia, R; Lens, PN
Divalent metal addition restores sulfide-inhibited N(2)O reduction in Pseudomonas aeruginosa.
Nitric Oxide
2010
Pseudomonas aeruginosa
Automatic Mining of ENzyme DAta
Jones, CM; Welsh, A; Throbck, IN; Drsch, P; Bakken, LR; Hallin, S
Phenotypic and genotypic heterogeneity among closely related soil-borne N(2) - and N(2) O-producing Bacillus isolates harboring the nosZ gene.
FEMS Microbiol Ecol
2011
Bacillus, Bacteria
Automatic Mining of ENzyme DAta
Chen, Z; Hou, H; Zheng, Y; Qin, H; Zhu, Y; Wu, J; Wei, W
Influence of fertilisation regimes on a nosZ-containing denitrifying community in a rice paddy soil.
J Sci Food Agric
2011
Oryza sativa
Automatic Mining of ENzyme DAta
Haichar, FE; Roncato, MA; Achouak, W
Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana.
FEMS Microbiol Ecol
2012
Arabidopsis thaliana, plant
Automatic Mining of ENzyme DAta
Clark, IM; Buchkina, N; Jhurreea, D; Goulding, KW; Hirsch, PR
Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment.
Philos Trans R Soc Lond B Biol Sci
367
1235-44
2012
Bacteria, Triticum aestivum
Automatic Mining of ENzyme DAta
Felgate, H; Giannopoulos, G; Sullivan, MJ; Gates, AJ; Clarke, TA; Baggs, E; Rowley, G; Richardson, DJ
The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways.
Environ Microbiol
14
1788-800
2012
Bacteria, Achromobacter, Paracoccus
Automatic Mining of ENzyme DAta
Pan, Y; Ni, BJ; Bond, PL; Ye, L; Yuan, Z
Electron competition among nitrogen oxides reduction during methanol-utilizing denitrification in wastewater treatment.
Water Res
47
3273-81
2013
Electron
Automatic Mining of ENzyme DAta
Torres, MJ; Argandoa, M; Vargas, C; Bedmar, EJ; Fischer, HM; Mesa, S; Delgado, MJ
The global response regulator RegR controls expression of denitrification genes in Bradyrhizobium japonicum.
PLoS One
9
e99011
2014
Electron, Bradyrhizobium japonicum, Proteobacteria, Anoxia
Automatic Mining of ENzyme DAta
Dogs, M; Voget, S; Teshima, H; Petersen, J; Davenport, K; Dalingault, H; Chen, A; Pati, A; Ivanova, N; Goodwin, LA; Chain, P; Detter, JC; Standfest, S; Rohde, M; Gronow, S; Kyrpides, NC; Woyke, T; Simon, M; Klenk, HP; Gker, M; Brinkhoff, T
Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.
Stand Genomic Sci
9
334-50
2013
Phaeobacter gallaeciensis
Automatic Mining of ENzyme DAta
Jin, R; Liu, T; Liu, G; Zhou, J; Huang, J; Wang, A
Simultaneous Heterotrophic Nitrification and Aerobic Denitrification by the Marine Origin Bacterium Pseudomonas sp. ADN-42.
Appl Biochem Biotechnol
175
2000-11
2015
Pseudomonas sp., bacterium, Bacteria, Hymeniacidon perlevis
Automatic Mining of ENzyme DAta
Koul, V; Tripathi, C; Adholeya, A; Kochar, M
Nitric oxide metabolism and indole acetic acid biosynthesis cross-talk in Azospirillum brasilense SM.
Res Microbiol
2015
Azospirillum brasilense SM, bacterium
Automatic Mining of ENzyme DAta
Zhu, S; Zheng, M; Li, C; Gui, M; Chen, Q; Ni, J
Special role of corn flour as an ideal carbon source for aerobic denitrification with minimized nitrous oxide emission.
Bioresour Technol
186
44-51
2015
Zea mays subsp. mays
Automatic Mining of ENzyme DAta
Yuan, Q; Wang, H; Hang, Q; Deng, Y; Liu, K; Li, C; Zheng, S
Comparison of the MBBR denitrification carriers for advanced nitrogen removal of wastewater treatment plant effluent.
Environ Sci Pollut Res Int
22
13970-9
2015
Bacteria
Automatic Mining of ENzyme DAta
Bueno, E; Mania, D; Frostegard, ?; Bedmar, EJ; Bakken, LR; Delgado, MJ
Anoxic growth of Ensifer meliloti 1021 by N2O-reduction, a potential mitigation strategy.
Front Microbiol
6
537
2015
Bacteria, Paracoccus denitrificans
Automatic Mining of ENzyme DAta
Chen, R; Wang, Y; Wang, W; Wei, S; Jing, Z; Lin, X
N2O emissions and nitrogen transformation during windrow composting of dairy manure.
J Environ Manage
160
121-7
2015
Transformation
Automatic Mining of ENzyme DAta
Nie, Y; Li, L; Wang, M; Tahvanainen, T; Hashidoko, Y
Nitrous oxide emission potentials of Burkholderia species isolated from the leaves of a boreal peat moss Sphagnum fuscum.
Biosci Biotechnol Biochem
79
2086-95
2015
Burkholderia
Automatic Mining of ENzyme DAta
Shvaleva, A; Siljanen, HM; Correia, A; Costa E Silva, F; Lamprecht, RE; Lobo-do-Vale, R; Bicho, C; Fangueiro, D; Anderson, M; Pereira, JS; Chaves, MM; Cruz, C; Martikainen, PJ
Environmental and microbial factors influencing methane and nitrous oxide fluxes in Mediterranean cork oak woodlands: trees make a difference.
Front Microbiol
6
1104
2015
Bacteria
Automatic Mining of ENzyme DAta
He, S; Tominski, C; Kappler, A; Behrens, S; Roden, EE
Metagenomic analyses of the autotrophic Fe(II)-oxidizing, nitrate-reducing enrichment Culture KS.
Appl Environ Microbiol
2016
Bacteria, Electron, enrichment culture, Gallionellaceae, Sideroxydans lithotrophicus
Automatic Mining of ENzyme DAta
Ross, DE; Marshall, CW; May, HD; Norman, RS
Comparative Genomic Analysis of Sulfurospirillum cavolei MES Reconstructed from the Metagenome of an Electrosynthetic Microbiome.
PLoS One
11
e0151214
2016
Sulfurospirillum
Automatic Mining of ENzyme DAta
Akiyama, H; Hoshino, YT; Itakura, M; Shimomura, Y; Wang, Y; Yamamoto, A; Tago, K; Nakajima, Y; Minamisawa, K; Hayatsu, M
Mitigation of soil N2O emission by inoculation with a mixed culture of indigenous Bradyrhizobium diazoefficiens.
Sci Rep
6
32869
2016
Bradyrhizobium diazoefficiens, Glycine max
Automatic Mining of ENzyme DAta
Zhang, L; Trncik, C; Andrade, SLA; Einsle, O
The flavinyl transferase ApbE of Pseudomonas stutzeri matures the NosR protein required for nitrous oxide reduction.
Biochim Biophys Acta
1858
95-102
2017
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Akob, DM; Baesman, SM; Sutton, JM; Fierst, JL; Mumford, AC; Shrestha, Y; Poret-Peterson, AT; Bennett, S; Dunlap, DS; Haase, KB; Oremland, RS
Detection of Diazotrophy in the Acetylene-Fermenting Anaerobe Pelobacter sp. Strain SFB93.
Appl Environ Microbiol
83
2017
Syntrophotalea acetylenica
Automatic Mining of ENzyme DAta
Sun, X; Jayakumar, A; Ward, BB
Community Composition of Nitrous Oxide Consuming Bacteria in the Oxygen Minimum Zone of the Eastern Tropical South Pacific.
Front Microbiol
8
1183
2017
Bacteria
Automatic Mining of ENzyme DAta
Hawley, AK; Nobu, MK; Wright, JJ; Durno, WE; Morgan-Lang, C; Sage, B; Schwientek, P; Swan, BK; Rinke, C; Torres-Beltrn, M; Mewis, K; Liu, WT; Stepanauskas, R; Woyke, T; Hallam, SJ
Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.
Nat Commun
8
1507
2017
Candidatus Marinimicrobia
Automatic Mining of ENzyme DAta
Suenaga, T; Riya, S; Hosomi, M; Terada, A
Biokinetic Characterization and Activities of N2O-Reducing Bacteria in Response to Various Oxygen Levels.
Front Microbiol
9
697
2018
Azospira sp.
Automatic Mining of ENzyme DAta
Pang, Y; Wang, J
Insight into the mechanism of chemoautotrophic denitrification using pyrite (FeS2) as electron donor.
Bioresour Technol
318
124105
2020
Bacteria
Automatic Mining of ENzyme DAta
Braga, LPP; Pereira, RV; Martins, LF; Moura, LMS; Sanchez, FB; Patan, JSL; da Silva, AM; Setubal, JC
Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions.
BMC Genomics
22
652
2021
Bacteria
Automatic Mining of ENzyme DAta
Körner, H; Frunzke, K; Döhler, K; Zumft, WG
Immunochemical patterns of distribution of nitrous oxide reductase and nitrite reductase (cytochrome cd1) among denitrifying pseudomonads.
Arch Microbiol
148
20-4
1987
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Farrar, JA; Thomson, AJ; Cheesman, MR; Dooley, DM; Zumft, WG
A model of the copper centres of nitrous oxide reductase (Pseudomonas stutzeri). Evidence from optical, EPR and MCD spectroscopy.
FEBS Lett
294
11-5
1991
Pseudomonas stutzeri, Electron
Automatic Mining of ENzyme DAta
Kroneck, PM; Riester, J; Zumft, WG; Antholine, WE
The copper site in nitrous oxide reductase.
Biol Met
3
103-9
1990
Pseudomonas stutzeri, transposons, Electron
Automatic Mining of ENzyme DAta
McGuirl, MA; Bollinger, JA; Cosper, N; Scott, RA; Dooley, DM
Expression, purification, and characterization of NosL, a novel Cu(I) protein of the nitrous oxide reductase (nos) gene cluster.
J Biol Inorg Chem
6
189-95
2001
Electron
Automatic Mining of ENzyme DAta
Alvarez, ML; Ai, J; Zumft, W; Sanders-Loehr, J; Dooley, DM
Characterization of the copper-sulfur chromophores in nitrous oxide reductase by resonance raman spectroscopy: evidence for sulfur coordination in the catalytic cluster.
J Am Chem Soc
123
576-87
2001
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Stres, B; Mahne, I; Avgustin, G; Tiedje, JM
Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils.
Appl Environ Microbiol
70
301-9
2004
Bacteria
Automatic Mining of ENzyme DAta
Oganesyan, VS; Rasmussen, T; Fairhurst, S; Thomson, AJ
Characterisation of [Cu4S], the catalytic site in nitrous oxide reductase, by EPR spectroscopy.
Dalton Trans
996-1002
2004
Paracoccus pantotrophus
Automatic Mining of ENzyme DAta
Zumft, WG
Biogenesis of the bacterial respiratory CuA, Cu-S enzyme nitrous oxide reductase.
J Mol Microbiol Biotechnol
10
154-66
2005
Electron
Automatic Mining of ENzyme DAta
Pomowski, A; Zumft, WG; Kroneck, PM; Einsle, O
N(2)O binding at a [4Cu:2S] copper-sulphur cluster in nitrous oxide reductase.
Nature
2011
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Wan, S; Ward, TL; Altosaar, I
Strategy and tactics of disarming GHG at the source: N2O reductase crops.
Trends Biotechnol
30
410-5
2012
Pseudomonas stutzeri
Automatic Mining of ENzyme DAta
Wst, A; Schneider, L; Pomowski, A; Zumft, WG; Kroneck, PM; Einsle, O
Nature's way of handling a greenhouse gas: the copper-sulfur cluster of purple nitrous oxide reductase.
Biol Chem
393
1067-77
2012
Pseudomonas stutzeri, Paracoccus denitrificans, Marinobacter, Marinobacter hydrocarbonoclasticus
Automatic Mining of ENzyme DAta
Sanford, RA; Wagner, DD; Wu, Q; Chee-Sanford, JC; Thomas, SH; Cruz-Garca, C; Rodrguez, G; Massol-Dey, A; Krishnani, KK; Ritalahti, KM; Nissen, S; Konstantinidis, KT; Lffler, FE
Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils.
Proc Natl Acad Sci U S A
109
19709-14
2012
Bacteria, Archaea, Anaeromyxobacter dehalogenans, bacterium
Automatic Mining of ENzyme DAta
Wang, C; Zhu, G; Wang, Y; Wang, S; Yin, C
Nitrous oxide reductase gene (nosZ) and N2O reduction along the littoral gradient of a eutrophic freshwater lake.
J Environ Sci (China)
25
44-52
2013
Niveispirillum irakense, Bradyrhizobiaceae, Rhodospirillaceae, Azospirillum largimobile, Rhizobiaceae
Automatic Mining of ENzyme DAta
Johnson, BJ; Lindeman, SV; Mankad, NP
Assembly, structure, and reactivity of Cu?S and Cu?S models for the nitrous oxide reductase active site, Cu(Z)*.
Inorg Chem
53
10611-9
2014
Dioscorea alata, Transformation
Automatic Mining of ENzyme DAta
Schneider, LK; Wst, A; Pomowski, A; Zhang, L; Einsle, O
No laughing matter: the unmaking of the greenhouse gas dinitrogen monoxide by nitrous oxide reductase.
Met Ions Life Sci
14
177-210
2014
Electron
Automatic Mining of ENzyme DAta
Bennett, SP; Soriano-Laguna, MJ; Bradley, JM; Svistunenko, DA; Richardson, DJ; Gates, AJ; Le Brun, NE
NosL is a dedicated copper chaperone for assembly of the CuZ center of nitrous oxide reductase.
Chem Sci
10
4985-4993
2019
Bacteria, Electron
Automatic Mining of ENzyme DAta
Zhang, L; Bill, E; Kroneck, PMH; Einsle, O
A [3Cu:2S] cluster provides insight into the assembly and function of the CuZ site of nitrous oxide reductase.
Chem Sci
12
3239-3244
2021
Pseudomonas stutzeri, Escherichia coli
Automatic Mining of ENzyme DAta
Kroneck, PM; Antholine, WE; Kastrau, DH; Buse, G; Steffens, GC; Zumft, WG
Multifrequency EPR evidence for a bimetallic center at the CuA site in cytochrome c oxidase.
FEBS Lett
268
274-6
1990
Pseudomonas stutzeri, Bos taurus, Electron
Automatic Mining of ENzyme DAta
Hoshino, T; Schramm, A
Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells.
Environ Microbiol
2010
Pseudomonas stutzeri, Chondrichthyes, Candidatus Accumulibacter phosphatis, activated sludge metagenome
Automatic Mining of ENzyme DAta
Schmalenberger, A; Fox, A
Bacterial Mobilization of Nutrients From Biochar-Amended Soils.
Adv Appl Microbiol
94
109-59
2016
Microbiota, plant
Automatic Mining of ENzyme DAta
Tolman, WB
Using synthetic chemistry to understand copper protein active sites: a personal perspective.
J Biol Inorg Chem
1-11
2006
Electron
Automatic Mining of ENzyme DAta
Falk, S; Liu, B; Braker, G
Isolation, genetic and functional characterization of novel soil nirK-type denitrifiers.
Syst Appl Microbiol
33
337-47
2010
Bacteria, Mesorhizobium sp.
Automatic Mining of ENzyme DAta
Zhu, X; Chen, Y
Reduction of N(2)O and NO Generation in Anaerobic-Aerobic (Low Dissolved Oxygen) Biological Wastewater Treatment Process by Using Sludge Alkaline Fermentation Liquid.
Environ Sci Technol
45
2137-43
2011
Bacteria
Automatic Mining of ENzyme DAta
Zhang, X; He, L; Zhang, F; Sun, W; Li, Z
The different potential of sponge bacterial symbionts in N? release indicated by the phylogenetic diversity and abundance analyses of denitrification genes, nirK and nosZ.
PLoS One
8
e65142
2013
Bacteria, Cyanobacteria, gammaproteobacteria, Porifera, Cinachyrella, Xestospongia testudinaria
Automatic Mining of ENzyme DAta
Wu, Z; Zhang, X; Dong, Y; Xu, X; Xiong, Z
Microbial explanations for field-aged biochar mitigating greenhouse gas emissions during a rice-growing season.
Environ Sci Pollut Res Int
2018
Archaea, Oryza sativa, Nitrosomonadales
Automatic Mining of ENzyme DAta
Gao, B; Yao, H; Li, Y; Zhu, Y
Microplastic Addition Alters the Microbial Community Structure and Stimulates Soil Carbon Dioxide Emissions in Vegetable-Growing Soil.
Environ Toxicol Chem
40
352-365
2021
Archaea, Nitrosomonadales
Automatic Mining of ENzyme DAta
Wang, Y; Gao, H; F Wells, G
Integrated omics analyses reveal differential gene expression and potential for cooperation between denitrifying polyphosphate and glycogen accumulating organisms.
Environ Microbiol
23
3274-3293
2021
Candidatus Accumulibacter
Automatic Mining of ENzyme DAta
Madegwa, YM; Uchida, Y
Liming improves the stability of soil microbial community structures against the application of digestate made from dairy wastes.
J Environ Manage
297
113356
2021
Archaea, Nitrosomonadales
Automatic Mining of ENzyme DAta
Berry, SM; Wang, X; Lu, Y
Ligand replacement study at the His120 site of purple CuA azurin.
J Inorg Biochem
78
89-95
2000
Electron
Automatic Mining of ENzyme DAta
Epel, B; Slutter, CS; Neese, F; Kroneck, PM; Zumft, WG; Pecht, I; Farver, O; Lu, Y; Goldfarb, D
Electron-mediating Cu(A) centers in proteins: a comparative high field (1)H ENDOR study.
J Am Chem Soc
124
8152-62
2002
Thermus thermophilus
Automatic Mining of ENzyme DAta
Tamegai, H; Kato, C; Horikoshi, K
Gene cluster of nitrous oxide reduction in the deep sea of mariana trench.
J Biochem Mol Biol Biophys
6
221-4
2002
Pseudomonas sp.
Automatic Mining of ENzyme DAta
Nielsen, M; Larsen, LH; Jetten, MS; Revsbech, NP
Bacterium-based NO2- biosensor for environmental applications.
Appl Environ Microbiol
70
6551-8
2004
Alcaligenes faecalis
Automatic Mining of ENzyme DAta
Kababya, S; Nelson, J; Calle, C; Neese, F; Goldfarb, D
Electronic structure of binuclear mixed valence copper azacryptates derived from integrated advanced EPR and DFT calculations.
J Am Chem Soc
128
2017-29
2006
Electron
Automatic Mining of ENzyme DAta
Zhu, S; Chan, GY; Cai, KL; Qu, LH; Huang, LN
Leachates from municipal solid waste disposal sites harbor similar, novel nitrogen-cycling bacterial communities.
FEMS Microbiol Lett
267
236-42
2007
Bacteria, Nitrosomonadales
Automatic Mining of ENzyme DAta
Stres, B; Danevcic, T; Pal, L; Fuka, MM; Resman, L; Leskovec, S; Hacin, J; Stopar, D; Mahne, I; Mandic-Mulec, I
Influence of temperature and soil water content on bacterial, archaeal and denitrifying microbial communities in drained fen grassland soil microcosms.
FEMS Microbiol Ecol
66
110-22
2008
Bacteria
Automatic Mining of ENzyme DAta
Morales, SE; Cosart, T; Holben, WE
Bacterial gene abundances as indicators of greenhouse gas emission in soils.
ISME J
2010
Acidobacteria, Phyla
Automatic Mining of ENzyme DAta
Kong, AY; Hristova, K; Scow, KM; Six, J
Impacts of different N management regimes on nitrifier and denitrifier communities and N cycling in soil microenvironments.
Soil Biol Biochem
42
1523-1533
2010
Nitrosomonadales
Automatic Mining of ENzyme DAta
Lin, X; Kennedy, D; Peacock, A; McKinley, J; Resch, CT; Fredrickson, J; Konopka, A
Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment.
Appl Environ Microbiol
78
759-67
2012
Brucella anthropi, Desulfotomaculum, Achromobacter xylosoxidans, Geobacteraceae, Transformation
Automatic Mining of ENzyme DAta
Long, A; Heitman, J; Tobias, C; Philips, R; Song, B
Co-occurring anammox, denitrification, and codenitrification in agricultural soils.
Appl Environ Microbiol
79
168-76
2013
Fusarium oxysporum
Automatic Mining of ENzyme DAta
Woolfenden, HC; Gates, AJ; Bocking, C; Blyth, MG; Richardson, DJ; Moulton, V
Modeling the effect of copper availability on bacterial denitrification.
Microbiologyopen
2013
Bacteria, Paracoccus denitrificans
Automatic Mining of ENzyme DAta
Sullivan, MJ; Gates, AJ; Appia-Ayme, C; Rowley, G; Richardson, DJ
Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism.
Proc Natl Acad Sci U S A
110
19926-31
2013
Bacteria, Paracoccus denitrificans, bacterium
Automatic Mining of ENzyme DAta
Liu, B; Frostegrd, ; Bakken, LR
Impaired reduction of N2O to N2 in acid soils is due to a posttranscriptional interference with the expression of nosZ.
MBio
5
e01383-14
2014
Paracoccus denitrificans
Automatic Mining of ENzyme DAta
Calderer, M; Mart, V; de Pablo, J; Guivernau, M; Prenafeta-Bold, FX; Vias, M
Effects of enhanced denitrification on hydrodynamics and microbial community structure in a soil column system.
Chemosphere
111
112-9
2014
Bacteria, Acidovorax, Hydrogenophaga
Automatic Mining of ENzyme DAta
Miao, Z; Zeng, W; Wang, S; Peng, Y; Cao, G; Weng, D; Xue, G; Yang, Q
Effect of temperature on anoxic metabolism of nitrites to nitrous oxide by polyphosphate accumulating organisms.
J Environ Sci (China)
26
264-73
2014
Electron
Automatic Mining of ENzyme DAta
Graf, DR; Jones, CM; Hallin, S
Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions.
PLoS One
9
e114118
2014
Bacteria, Archaea, Phyla
Automatic Mining of ENzyme DAta
Saarenheimo, J; Rissanen, AJ; Arvola, L; Nyknen, H; Lehmann, MF; Tiirola, M
Genetic and environmental controls on nitrous oxide accumulation in lakes.
PLoS One
10
e0121201
2015
Bacteria
Automatic Mining of ENzyme DAta
Dini-Andreote, F; Brossi, MJ; van Elsas, JD; Salles, JF
Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem.
Front Microbiol
7
902
2016
Bacteria
Automatic Mining of ENzyme DAta
Weisener, C; Lee, J; Chaganti, SR; Reid, T; Falk, N; Drouillard, K
Investigating sources and sinks of N2O expression from freshwater microbial communities in urban watershed sediments.
Chemosphere
188
697-705
2017
Dechloromonas, Thermomonas
Automatic Mining of ENzyme DAta
Coates, CJ; Wyman, M
A denitrifying community associated with a major, marine nitrogen fixer.
Environ Microbiol
19
4978-4992
2017
Bacteria
Automatic Mining of ENzyme DAta
Bakker, MG; Looft, T; Alt, DP; Delate, K; Cambardella, CA
Bulk soil bacterial community structure and function respond to long-term organic and conventional agricultural management.
Can J Microbiol
64
901-914
2018
Medicago sativa, Zea mays subsp. mays
Automatic Mining of ENzyme DAta
Semedo, M; Song, B; Sparrer, T; Phillips, RL
Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils.
Front Microbiol
9
2121
2018
Bacteria
Automatic Mining of ENzyme DAta
Nakagawa, T; Tsuchiya, Y; Ueda, S; Fukui, M; Takahashi, R
Eelgrass Sediment Microbiome as a Nitrous Oxide Sink in Brackish Lake Akkeshi, Japan.
Microbes Environ
2018
Bacteria, metagenome
Automatic Mining of ENzyme DAta
Miao, S; Jin, C; Liu, R; Bai, Y; Liu, H; Hu, C; Qu, J
Microbial community structures and functions of hypersaline heterotrophic denitrifying process: Lab-scale and pilot-scale studies.
Bioresour Technol
310
123244
2020
Halomonas, Thauera
Automatic Mining of ENzyme DAta
Zhuge, YY; Shen, XY; Liu, YD; Shapleigh, J; Li, W
Application of acidic conditions and inert-gas sparging to achieve high-efficiency nitrous oxide recovery during nitrite denitrification.
Water Res
182
116001
2020
Bacteria
Automatic Mining of ENzyme DAta
Keeley, RF; Rodriguez-Gonzalez, L; Class, USFG; Briggs, GE; Frazier, VE; Mancera, PA; Manzer, HS; Ergas, SJ; Scott, KM
Degenerate PCR primers for assays to track steps of nitrogen metabolism by taxonomically diverse microorganisms in a variety of environments.
J Microbiol Methods
175
105990
2020
Bacteria
Automatic Mining of ENzyme DAta
Guo, JL; Tian, MJ; Ge, TD; Wei, WX; Wang, GJ; Sun, ZL; Liu, Y
[Consumption Capacity of N2O in Paddy Soil and the Response Mechanism of nosZ-I-containing Communities].
Huan Jing Ke Xue
41
1968-1975
2020
Bacteria, Archaea
Automatic Mining of ENzyme DAta
Morgada, MN; Murgida, DH; Vila, AJ
Purple Mixed-Valent Copper A.
Met Ions Life Sci
20
2020
Electron
Automatic Mining of ENzyme DAta
Bertagnolli, AD; Konstantinidis, KT; Stewart, FJ
Non-denitrifier nitrous oxide reductases dominate marine biomes.
Environ Microbiol Rep
12
681-692
2020
metagenomes
Automatic Mining of ENzyme DAta
Wen D;Bai Y;Shi Q;Li Z;Sun Q;Sun R;Feng C;Tang X
Bacterial diversity in the polluted water of the Dianchi Lakeshore in China
Annals of microbiology
62
715-723
2012
Bacteria, Nitrosomonadales
Automatic Mining of ENzyme DAta
Pastorelli R;Landi S;Trabelsi D;Piccolo R;Mengoni A;Bazzicalupo M;Pagliai M
Effects of soil management on structure and activity of denitrifying bacterial communities
Applied soil ecology : a section of Agriculture, Ecosystems & Environment
49
46-58
2011
Bacteria
Automatic Mining of ENzyme DAta
Morkved PT;Dorsch P;Henriksen TM;Bakken LR
N2O emissions and product ratios of nitrification and denitrification as affected by freezing and thawing
Soil biology & biochemistry
38
3411-3420
2006
plant
Automatic Mining of ENzyme DAta
Holtan-Hartwig L;Bechmann M;Hoyas TR;Linjordet R;Bakken LR
Heavy metals tolerance of soil denitrifying communities: N2O dynamics.
Soil biology & biochemistry
34
1181-1190
2002
Indicator
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