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Information on Organism Pseudomonas fragi

Synonyms:
ATCC 4973; "Bacterium fragi" Eichholz 1902; Bacterium fragi; CCUG 556; CFBP 4556; CIP 55.4; culture-collection:NRRL:B 25; culture-collection:NRRL:B:727; DSM 3456; HAMBI 28; IFO 3458; LMG 2191; LMG:2191; NBRC 3458; NCCB 69033; NCIB 8542; NCIB:8542; NCTC 10689; NRRL B-25; NRRL:B:25; NRRL B-727; "Pseudomonas fragariae" Gruber 1905; Pseudomonas fragariae; Pseudomonas fragi (Eichholz 1902) Gruber 1905 (Approved Lists 1980); Pseudomonas fragi; VKM B-898; VKM:B:898; Pseudomonas fragi (Eichholz 1902) Gruber 1905;
Word Map for Organism Pseudomonas fragi
TaxTree of Organism Pseudomonas fragi
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Pseudomonadales can be found in Brenda BRENDA pathways(order)
Pseudomonadaceae can be found in Brenda BRENDA pathways(family)
Pseudomonas can be found in Brenda BRENDA pathways(genus)
Pseudomonas chlororaphis group can be found in Brenda (species group)
Pseudomonas fragi can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
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PWY-7726
(5Z)-dodecenoate biosynthesis II
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PWY-7858
(8E,10E)-dodeca-8,10-dienol biosynthesis
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PWY-7654
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
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PWY-7216
(S)-propane-1,2-diol degradation
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PWY-7013
10-cis-heptadecenoyl-CoA degradation (yeast)
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PWY-7337
10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
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PWY-7339
10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
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PWY-7338
2-arachidonoylglycerol biosynthesis
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PWY-8052
2-deoxy-D-glucose 6-phosphate degradation
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PWY-8121
2-deoxy-D-ribose degradation II
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PWY-8058
2-methyl-branched fatty acid beta-oxidation
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-
PWY-8181
2-methylpropene degradation
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-
PWY-7778
3-dehydroquinate biosynthesis I
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PWY-6164
3-hydroxypropanoate cycle
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-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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-
PWY-5789
3-methyl-branched fatty acid alpha-oxidation
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PWY66-387
3-methylbutanol biosynthesis (engineered)
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-
PWY-6871
3-phenylpropanoate degradation
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-
P281-PWY
4-ethylphenol degradation (anaerobic)
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PWY-6080
4-hydroxy-2-nonenal detoxification
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PWY-7112
4-hydroxybenzoate biosynthesis III (plants)
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PWY-6435
4-oxopentanoate degradation
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PWY-7948
6-gingerol analog biosynthesis (engineered)
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PWY-6920
9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
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PWY-7340
acetaldehyde biosynthesis I
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PWY-6333
acetate and ATP formation from acetyl-CoA III
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PWY-8328
acetate conversion to acetyl-CoA
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PWY0-1313
acetate fermentation
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acetoacetate degradation (to acetyl CoA)
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ACETOACETATE-DEG-PWY
acetyl-CoA fermentation to butanoate
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PWY-5676
acetylene degradation (anaerobic)
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P161-PWY
acrylonitrile degradation I
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-
PWY-7308
adipate biosynthesis
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PWY-8347
adipate degradation
adlupulone and adhumulone biosynthesis
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PWY-7857
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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alkane biosynthesis II
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PWY-7033
alpha-Linolenic acid metabolism
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Aminobenzoate degradation
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androstenedione degradation I (aerobic)
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PWY-6944
androstenedione degradation II (anaerobic)
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PWY-8152
arachidonate biosynthesis
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Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
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PWY-6443
benzoate biosynthesis III (CoA-dependent, non-beta-oxidative)
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PWY-6446
Benzoate degradation
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benzoyl-CoA biosynthesis
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PWY-6458
benzoyl-CoA degradation I (aerobic)
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PWY-1361
beta-Alanine metabolism
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betanidin degradation
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PWY-5461
Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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Brassinosteroid biosynthesis
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Butanoate metabolism
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butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
camalexin biosynthesis
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CAMALEXIN-SYN
Caprolactam degradation
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capsaicin biosynthesis
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PWY-5710
Carbon fixation pathways in prokaryotes
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cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
ceramide and sphingolipid recycling and degradation (yeast)
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PWY-7119
ceramide biosynthesis
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ceramide degradation by alpha-oxidation
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PWY66-388
chitin deacetylation
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PWY-7118
Chloroalkane and chloroalkene degradation
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cholesterol degradation to androstenedione I (cholesterol oxidase)
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PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
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PWY-6946
chorismate metabolism
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cis-geranyl-CoA degradation
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PWY-6672
CO2 fixation in Crenarchaeota
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CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
coenzyme A biosynthesis I (bacteria)
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COA-PWY
coenzyme A biosynthesis III (archaea)
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PWY-8342
coenzyme A metabolism
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colupulone and cohumulone biosynthesis
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PWY-5133
creatinine degradation
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creatinine degradation I
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CRNFORCAT-PWY
creatinine degradation II
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PWY-4722
crotonate fermentation (to acetate and cyclohexane carboxylate)
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PWY-7401
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
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PWY-7854
cutin biosynthesis
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PWY-321
cyanate degradation
Cysteine and methionine metabolism
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d-xylose degradation
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D-xylose degradation III
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PWY-6760
D-xylose degradation VI
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PWY-8330
degradation of aromatic, nitrogen containing compounds
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docosahexaenoate biosynthesis III (6-desaturase, mammals)
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PWY-7606
Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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Entner Doudoroff pathway
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ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation III
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PWY66-161
ethanol degradation IV
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PWY66-162
ethanol fermentation
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ethanolamine utilization
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PWY0-1477
ethene biosynthesis III (microbes)
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PWY-6854
Ether lipid metabolism
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Ethylbenzene degradation
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ethylbenzene degradation (anaerobic)
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PWY-481
ethylmalonyl-CoA pathway
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PWY-5741
fatty acid beta-oxidation I (generic)
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FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
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PWY-5136
fatty acid beta-oxidation IV (unsaturated, even number)
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PWY-5138
fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
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PWY-6837
fatty acid beta-oxidation VI (mammalian peroxisome)
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PWY66-391
fatty acid beta-oxidation VII (yeast peroxisome)
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PWY-7288
Fatty acid biosynthesis
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Fatty acid degradation
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Fatty acid elongation
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fatty acid salvage
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PWY-7094
Galactose metabolism
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gamma-linolenate biosynthesis II (animals)
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PWY-6000
Geraniol degradation
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gliotoxin biosynthesis
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PWY-7533
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
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DHGLUCONATE-PYR-CAT-PWY
glutaryl-CoA degradation
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PWY-5177
Glutathione metabolism
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glutathione metabolism
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glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
Glycerolipid metabolism
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Glycerophospholipid metabolism
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glycine betaine degradation I
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PWY-3661
glycine biosynthesis II
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GLYCINE-SYN2-PWY
glycine cleavage
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GLYCLEAV-PWY
Glycine, serine and threonine metabolism
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glycogen metabolism
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Glycolysis / Gluconeogenesis
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Glyoxylate and dicarboxylate metabolism
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glyoxylate assimilation
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PWY-5744
heterolactic fermentation
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P122-PWY
IAA biosynthesis
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icosapentaenoate biosynthesis II (6-desaturase, mammals)
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PWY-7049
icosapentaenoate biosynthesis III (8-desaturase, mammals)
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PWY-7724
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
Inositol phosphate metabolism
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isoprene biosynthesis II (engineered)
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PWY-7391
isopropanol biosynthesis (engineered)
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PWY-6876
jasmonic acid biosynthesis
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PWY-735
justicidin B biosynthesis
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PWY-6824
ketogenesis
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PWY66-367
ketolysis
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PWY66-368
L-arginine degradation V (arginine deiminase pathway)
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ARGDEGRAD-PWY
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-ascorbate biosynthesis VIII (engineered pathway)
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PWY-7165
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-isoleucine biosynthesis V
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PWY-5108
L-isoleucine degradation I
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ILEUDEG-PWY
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-lysine biosynthesis III
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PWY-2942
L-lysine fermentation to acetate and butanoate
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P163-PWY
L-methionine degradation III
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PWY-5082
L-phenylalanine degradation III
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PWY-5079
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tyrosine degradation III
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PWY3O-4108
L-valine degradation II
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PWY-5057
leucine metabolism
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Limonene and pinene degradation
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linoleate biosynthesis II (animals)
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PWY-6001
lipid metabolism
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long chain fatty acid ester synthesis (engineered)
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PWY-6873
long-chain fatty acid activation
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PWY-5143
lupulone and humulone biosynthesis
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PWY-5132
luteolin triglucuronide degradation
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PWY-7445
Lysine biosynthesis
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-
Lysine degradation
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-
lysine metabolism
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-
manganese oxidation I
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PWY-6591
matairesinol biosynthesis
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PWY-5466
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methanol oxidation to formaldehyde IV
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PWY-5506
methionine metabolism
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methyl indole-3-acetate interconversion
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PWY-6303
methyl ketone biosynthesis (engineered)
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PWY-7007
methyl tert-butyl ether degradation
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PWY-7779
methylsalicylate degradation
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PWY18C3-24
mevalonate pathway I (eukaryotes and bacteria)
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PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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PWY-7524
mevalonate pathway IV (archaea)
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PWY-8125
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
Naphthalene degradation
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-
Nitrogen metabolism
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-
nocardicin A biosynthesis
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PWY-7797
non-pathway related
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noradrenaline and adrenaline degradation
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PWY-6342
octane oxidation
oleandomycin activation/inactivation
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PWY-6972
oleate beta-oxidation
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PWY0-1337
oleate beta-oxidation (isomerase-dependent, yeast)
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PWY-7291
oleate biosynthesis I (plants)
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PWY-5147
oxalate degradation VI
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PWY-7985
palmitate biosynthesis II (type II fatty acid synthase)
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PWY-5971
palmitate biosynthesis III
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PWY-8279
Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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Penicillin and cephalosporin biosynthesis
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penicillin K biosynthesis
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PWY-5630
pentachlorophenol degradation
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PCPDEG-PWY
Pentose and glucuronate interconversions
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Pentose phosphate pathway
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phenylacetate degradation (aerobic)
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phenylacetate degradation I (aerobic)
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PWY0-321
Phenylalanine metabolism
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phenylalanine metabolism
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-
Phenylalanine, tyrosine and tryptophan biosynthesis
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phenylethanol biosynthesis
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PWY-5751
Phenylpropanoid biosynthesis
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phosphatidylcholine acyl editing
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PWY-6803
phospholipases
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LIPASYN-PWY
phosphopantothenate biosynthesis I
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-
PANTO-PWY
phytol degradation
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-
PWY66-389
plasmalogen biosynthesis I (aerobic)
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-
PWY-7782
plasmalogen degradation
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PWY-7783
platensimycin biosynthesis
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-
PWY-8179
Polycyclic aromatic hydrocarbon degradation
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-
polyhydroxybutanoate biosynthesis
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-
PWY1-3
polyhydroxydecanoate biosynthesis
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PWY-6657
propanoate fermentation to 2-methylbutanoate
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PWY-5109
Propanoate metabolism
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-
propanol degradation
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-
propanoyl-CoA degradation II
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-
PWY-7574
Pyrimidine metabolism
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-
pyrimidine metabolism
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-
pyrimidine nucleobases salvage II
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-
PWY-7194
pyrimidine ribonucleosides salvage III
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-
PWY-7195
pyruvate fermentation to acetone
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PWY-6588
pyruvate fermentation to butanoate
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CENTFERM-PWY
pyruvate fermentation to butanol I
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PWY-6583
pyruvate fermentation to butanol II (engineered)
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-
PWY-6883
pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to hexanol (engineered)
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PWY-6863
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
reductive glycine pathway of autotrophic CO2 fixation
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PWY-8303
retinol biosynthesis
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PWY-6857
Retinol metabolism
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salidroside biosynthesis
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-
PWY-6802
serotonin degradation
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-
PWY-6313
serotonin metabolism
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-
sesamin biosynthesis
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PWY-5469
sitosterol degradation to androstenedione
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-
PWY-6948
sphingosine and sphingosine-1-phosphate metabolism
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-
PWY3DJ-11470
Spodoptera littoralis pheromone biosynthesis
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PWY-7656
sporopollenin precursors biosynthesis
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PWY-6733
Starch and sucrose metabolism
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-
stearate biosynthesis I (animals)
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PWY-5972
stearate biosynthesis II (bacteria and plants)
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PWY-5989
stearate biosynthesis IV
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PWY-8280
Steroid biosynthesis
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sterol:steryl ester interconversion (yeast)
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PWY-7424
Styrene degradation
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suberin monomers biosynthesis
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PWY-1121
superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of methylsalicylate metabolism
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PWY18C3-25
Toluene degradation
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-
triacylglycerol degradation
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-
LIPAS-PWY
Tropane, piperidine and pyridine alkaloid biosynthesis
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-
Tryptophan metabolism
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-
tryptophan metabolism
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-
Tyrosine metabolism
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tyrosine metabolism
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-
UMP biosynthesis I
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-
PWY-5686
UMP biosynthesis II
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-
PWY-7790
UMP biosynthesis III
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-
PWY-7791
valine metabolism
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-
Valine, leucine and isoleucine degradation
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-
valproate beta-oxidation
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-
PWY-8182
wax esters biosynthesis II
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-
PWY-5885
xanthommatin biosynthesis
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PWY-8249
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Pseudomonas fragi)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA