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Information on Organism Scomber japonicus

Synonyms:
chub mackerel; Pneumatophorus japonicus; Scomber japonicus Houttuyn, 1782; Scomber japonicus; Spanish mackerel;
TaxTree of Organism Scomber japonicus
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Opisthokonta can be found in Brenda BRENDA pathways(clade)
Metazoa can be found in Brenda BRENDA pathways(kingdom)
Eumetazoa can be found in Brenda BRENDA pathways(clade)
Bilateria can be found in Brenda BRENDA pathways(clade)
Deuterostomia can be found in Brenda BRENDA pathways(clade)
Chordata can be found in Brenda BRENDA pathways(phylum)
Craniata can be found in Brenda (subphylum)
Vertebrata can be found in Brenda BRENDA pathways(clade)
Gnathostomata can be found in Brenda BRENDA pathways(clade)
Teleostomi can be found in Brenda (clade)
Euteleostomi can be found in Brenda BRENDA pathways(clade)
Actinopterygii can be found in Brenda BRENDA pathways(superclass)
Actinopteri can be found in Brenda (class)
Neopterygii can be found in Brenda BRENDA pathways(subclass)
Teleostei can be found in Brenda BRENDA pathways(infraclass)
Osteoglossocephalai can be found in Brenda (clade)
Clupeocephala can be found in Brenda BRENDA pathways
Euteleosteomorpha can be found in Brenda (cohort)
Neoteleostei can be found in Brenda BRENDA pathways(clade)
Eurypterygia can be found in Brenda (clade)
Ctenosquamata can be found in Brenda (clade)
Acanthomorphata can be found in Brenda BRENDA pathways(clade)
Euacanthomorphacea can be found in Brenda (clade)
Percomorphaceae can be found in Brenda BRENDA pathways(clade)
Pelagiaria can be found in Brenda (clade)
Scombriformes can be found in Brenda BRENDA pathways(order)
Scombridae can be found in Brenda BRENDA pathways(family)
Scombrinae can be found in Brenda (subfamily)
Scombrini can be found in Brenda (tribe)
Scomber can be found in Brenda BRENDA pathways(genus)
Scomber japonicus can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-propane-1,2-diol degradation
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PWY-7013
(S)-reticuline biosynthesis
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-
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
11-oxyandrogens biosynthesis
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PWY-8202
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
3-methylbutanol biosynthesis (engineered)
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PWY-6871
4-aminobutanoate degradation V
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PWY-5022
4-hydroxy-2-nonenal detoxification
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PWY-7112
acetaldehyde biosynthesis I
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PWY-6333
acetylene degradation (anaerobic)
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P161-PWY
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
alanine metabolism
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-
Alanine, aspartate and glutamate metabolism
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-
allantoin degradation
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allantoin degradation to glyoxylate I
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PWY-5694
allantoin degradation to glyoxylate III
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PWY-5705
allantoin degradation to ureidoglycolate I (urea producing)
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PWY-5697
alpha-linolenate metabolites biosynthesis
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PWY-8398
alpha-Linolenic acid metabolism
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Amino sugar and nucleotide sugar metabolism
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anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anandamide biosynthesis I
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PWY-8051
anandamide biosynthesis II
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PWY-8053
androgen and estrogen metabolism
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androgen biosynthesis
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PWY66-378
arachidonate metabolites biosynthesis
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PWY-8397
Arachidonic acid metabolism
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-
arachidonic acid metabolism
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Arginine and proline metabolism
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Arginine biosynthesis
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arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
aspirin triggered resolvin D biosynthesis
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PWY66-395
aspirin triggered resolvin E biosynthesis
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PWY66-394
ATP biosynthesis
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PWY-7980
backdoor pathway of androgen biosynthesis
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PWY-8200
Betalain biosynthesis
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Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C20 prostanoid biosynthesis
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PWY66-374
C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Calvin-Benson-Bassham cycle
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CALVIN-PWY
camalexin biosynthesis
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CAMALEXIN-SYN
Carbon fixation in photosynthetic organisms
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chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
Chloroalkane and chloroalkene degradation
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Citrate cycle (TCA cycle)
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citric acid cycle
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CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
creatine phosphate biosynthesis
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PWY-6158
Cutin, suberine and wax biosynthesis
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cyanate degradation
Cysteine and methionine metabolism
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D-Amino acid metabolism
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di-homo-gamma-linolenate metabolites biosynthesis
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PWY-8396
docosahexaenoate metabolites biosynthesis
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PWY-8400
Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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Entner Doudoroff pathway
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Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation IV
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PWY66-162
ethanol fermentation
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ethanolamine utilization
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PWY0-1477
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis IV (engineered)
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PWY-7126
ethene biosynthesis V (engineered)
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PWY-7124
Ether lipid metabolism
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eumelanin biosynthesis
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PWY-6498
Fatty acid degradation
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Fe(II) oxidation
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PWY-6692
firefly bioluminescence
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PWY-7913
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
fructan degradation
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PWY-862
Fructose and mannose metabolism
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-
Galactose metabolism
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-
gliotoxin biosynthesis
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PWY-7533
glucocorticoid biosynthesis
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PWY66-381
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glutamate and glutamine metabolism
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-
Glutathione metabolism
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-
glutathione metabolism
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-
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glycerol degradation to butanol
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PWY-7003
Glycerophospholipid metabolism
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glycine metabolism
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Glycine, serine and threonine metabolism
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-
glycogen degradation I
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GLYCOCAT-PWY
glycogen metabolism
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glycolysis
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-
Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glycosaminoglycan degradation
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-
Glycosphingolipid biosynthesis - ganglio series
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-
Glyoxylate and dicarboxylate metabolism
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-
glyoxylate assimilation
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PWY-5744
glyoxylate cycle
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-
GLYOXYLATE-BYPASS
heterolactic fermentation
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P122-PWY
icosapentaenoate metabolites biosynthesis
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-
PWY-8399
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
Isoquinoline alkaloid biosynthesis
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-
L-alanine biosynthesis II
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ALANINE-SYN2-PWY
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-alanine degradation III
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-
ALANINE-DEG3-PWY
L-alanine degradation V (oxidative Stickland reaction)
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PWY-8189
L-alanine degradation VI (reductive Stickland reaction)
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PWY-8188
L-dopa and L-dopachrome biosynthesis
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-
PWY-6481
L-glutamate degradation I
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GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-lysine degradation II (L-pipecolate pathway)
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PWY66-425
L-lysine degradation IV
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PWY-5280
L-lysine degradation V
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PWY-5283
L-lysine degradation VII
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PWY-5311
L-methionine degradation III
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PWY-5082
L-phenylalanine degradation III
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PWY-5079
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tyrosine degradation III
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PWY3O-4108
L-valine degradation II
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PWY-5057
leucine metabolism
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-
linoleate metabolites biosynthesis
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PWY-8395
Linoleic acid metabolism
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-
lipid metabolism
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Lysine degradation
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-
lysine metabolism
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-
manganese oxidation I
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PWY-6591
maresin biosynthesis
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PWY-8356
Metabolic pathways
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metabolism of disaccharids
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Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
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methanol oxidation to formaldehyde IV
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PWY-5506
methionine metabolism
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methylaspartate cycle
Microbial metabolism in diverse environments
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-
mixed acid fermentation
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FERMENTATION-PWY
NAD metabolism
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NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
Naphthalene degradation
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-
Nitrogen metabolism
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nitrogen remobilization from senescing leaves
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PWY-6549
nocardicin A biosynthesis
-
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PWY-7797
non-pathway related
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noradrenaline and adrenaline degradation
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PWY-6342
Other glycan degradation
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Oxidative phosphorylation
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oxidative phosphorylation
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partial TCA cycle (obligate autotrophs)
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PWY-5913
Penicillin and cephalosporin biosynthesis
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-
pentachlorophenol degradation
-
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PCPDEG-PWY
Pentose phosphate pathway
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-
pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
peptido-conjugates in tissue regeneration biosynthesis
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PWY-8355
Phenylalanine metabolism
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-
phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
phenylethanol biosynthesis
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PWY-5751
pheomelanin biosynthesis
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PWY-7917
phosphate acquisition
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PWY-6348
phosphatidylcholine acyl editing
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PWY-6803
phospholipases
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LIPASYN-PWY
phospholipid remodeling (phosphatidate, yeast)
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PWY-7417
phospholipid remodeling (phosphatidylcholine, yeast)
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PWY-7416
phospholipid remodeling (phosphatidylethanolamine, yeast)
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PWY-7409
photorespiration I
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PWY-181
Photosynthesis
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-
photosynthesis
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photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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-
PWY-7218
phytochromobilin biosynthesis
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PWY-7170
phytol degradation
-
-
PWY66-389
plasmalogen degradation
-
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PWY-7783
Porphyrin and chlorophyll metabolism
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propanol degradation
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-
protectin biosynthesis
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PWY-8357
Purine metabolism
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purine metabolism
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-
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
-
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PWY-7111
Pyruvate metabolism
-
-
reactive oxygen species degradation
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DETOX1-PWY-1
resolvin D biosynthesis
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-
PWY66-397
Retinol metabolism
-
-
Riboflavin metabolism
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Rubisco shunt
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PWY-5723
salidroside biosynthesis
-
-
PWY-6802
sedoheptulose bisphosphate bypass
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PWY0-1517
serotonin degradation
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-
PWY-6313
serotonin metabolism
-
-
Sphingolipid metabolism
-
-
Starch and sucrose metabolism
-
-
starch degradation
-
-
starch degradation I
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-
PWY-842
Steroid hormone biosynthesis
-
-
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
sucrose biosynthesis I (from photosynthesis)
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-
SUCSYN-PWY
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
superoxide radicals degradation
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-
DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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-
PWY4LZ-257
superpathway of glucose and xylose degradation
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-
PWY-6901
Taurine and hypotaurine metabolism
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TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
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-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
Thiamine metabolism
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-
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
-
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tryptophan metabolism
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-
Tyrosine metabolism
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-
tyrosine metabolism
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-
valine metabolism
-
-
Valine, leucine and isoleucine degradation
-
-
vitamin B1 metabolism
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
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LINKS TO OTHER DATABASES (specific for Scomber japonicus)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA