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TaxTree of Organism soil metagenome
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PATHWAY 
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
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PWY-6717
(5Z)-dodecenoate biosynthesis I
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PWY0-862
(5Z)-dodecenoate biosynthesis II
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PWY-7858
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-propane-1,2-diol degradation
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PWY-7013
1,5-anhydrofructose degradation
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PWY-6992
2'-deoxymugineic acid phytosiderophore biosynthesis
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PWY-5912
2-nitrotoluene degradation
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PWY-5641
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
3-methylbutanol biosynthesis (engineered)
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PWY-6871
8-amino-7-oxononanoate biosynthesis I
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PWY-6519
8-amino-7-oxononanoate biosynthesis IV
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PWY-8203
acetaldehyde biosynthesis I
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PWY-6333
acetate and ATP formation from acetyl-CoA III
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PWY-8328
acetate conversion to acetyl-CoA
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PWY0-1313
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetylene degradation (anaerobic)
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P161-PWY
acrylonitrile degradation I
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PWY-7308
acyl carrier protein activation
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PWY-6012-1
acyl carrier protein metabolism
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PWY-6012
adenine and adenosine salvage I
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P121-PWY
adenine and adenosine salvage III
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PWY-6609
adenine and adenosine salvage V
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PWY-6611
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
adlupulone and adhumulone biosynthesis
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PWY-7857
agarose degradation
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PWY-6816
alpha-tomatine degradation
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PWY18C3-5
Amaryllidacea alkaloids biosynthesis
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PWY-7826
ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anteiso-branched-chain fatty acid biosynthesis
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PWY-8173
apratoxin A biosynthesis
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PWY-8361
arsenate detoxification I
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PWY-8264
arsenate detoxification III
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PWY-8263
arsenic detoxification (mammals)
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PWY-4202
arsenic detoxification (plants)
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PWY-8259
arsenic detoxification (yeast)
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PWY-4621
bacterial bioluminescence
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PWY-7723
beta-(1,4)-mannan degradation
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PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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PWY-7586
Bifidobacterium shunt
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P124-PWY
biphenyl degradation
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PWY5F9-12
bupropion degradation
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PWY66-241
butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Calvin-Benson-Bassham cycle
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CALVIN-PWY
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
cellulose and hemicellulose degradation (cellulolosome)
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PWY-6784
cellulose degradation II (fungi)
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PWY-6788
chitin deacetylation
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PWY-7118
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
cis-geranyl-CoA degradation
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PWY-6672
cis-vaccenate biosynthesis
CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
coenzyme A biosynthesis I (bacteria)
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COA-PWY
coenzyme A biosynthesis III (archaea)
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PWY-8342
colupulone and cohumulone biosynthesis
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PWY-5133
coumarin biosynthesis (via 2-coumarate)
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PWY-5176
creatine phosphate biosynthesis
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PWY-6158
cuticular wax biosynthesis
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PWY-282
cutin biosynthesis
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PWY-321
cyanate degradation
degradation of aromatic, nitrogen containing compounds
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diethylphosphate degradation
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PWY-5491
diphenyl ethers degradation
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PWY-7747
drosopterin and aurodrosopterin biosynthesis
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PWY-7442
enterobactin biosynthesis
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ENTBACSYN-PWY
erythro-tetrahydrobiopterin biosynthesis I
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PWY-5663
erythromycin D biosynthesis
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PWY-7106
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation III
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PWY66-161
ethanol degradation IV
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PWY66-162
ethanolamine utilization
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PWY0-1477
ethene biosynthesis V (engineered)
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PWY-7124
even iso-branched-chain fatty acid biosynthesis
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PWY-8175
fatty acid elongation -- saturated
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FASYN-ELONG-PWY
firefly bioluminescence
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PWY-7913
fluoroacetate and fluorothreonine biosynthesis
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PWY-6644
formaldehyde assimilation I (serine pathway)
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PWY-1622
fructan degradation
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PWY-862
gamma-glutamyl cycle
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PWY-4041
GDP-mannose biosynthesis
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PWY-5659
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glycogen biosynthesis I (from ADP-D-Glucose)
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GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
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PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glyoxylate assimilation
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PWY-5744
glyoxylate cycle
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GLYOXYLATE-BYPASS
gondoate biosynthesis (anaerobic)
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PWY-7663
gossypol biosynthesis
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PWY-5773
guanine and guanosine salvage I
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PWY-6620
guanosine nucleotides degradation III
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PWY-6608
heterolactic fermentation
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P122-PWY
hypoglycin biosynthesis
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PWY-5826
incomplete reductive TCA cycle
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P42-PWY
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
inosine 5'-phosphate degradation
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PWY-5695
inulin degradation
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PWY-8314
justicidin B biosynthesis
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PWY-6824
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-asparagine biosynthesis I
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ASPARAGINE-BIOSYNTHESIS
L-asparagine degradation I
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ASPARAGINE-DEG1-PWY
L-asparagine degradation III (mammalian)
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ASPARAGINE-DEG1-PWY-1
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-glutamine biosynthesis I
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GLNSYN-PWY
L-histidine degradation V
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PWY-5031
L-isoleucine biosynthesis V
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PWY-5108
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-lysine degradation V
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PWY-5283
L-methionine degradation III
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PWY-5082
L-nicotianamine biosynthesis
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PWY-5957
L-phenylalanine degradation III
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PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tyrosine degradation I
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TYRFUMCAT-PWY
L-tyrosine degradation III
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PWY3O-4108
L-valine degradation II
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PWY-5057
leukotriene biosynthesis
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PWY66-375
linamarin degradation
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PWY-3121
linustatin bioactivation
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PWY-7091
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
long chain fatty acid ester synthesis (engineered)
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PWY-6873
lotaustralin degradation
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PWY-6002
lupulone and humulone biosynthesis
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PWY-5132
malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
melibiose degradation
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PWY0-1301
methane oxidation to methanol I
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PWY-1641
methanol oxidation to carbon dioxide
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PWY-7616
methanol oxidation to formaldehyde II
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PWY-6510
methanol oxidation to formaldehyde IV
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PWY-5506
methyl indole-3-acetate interconversion
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PWY-6303
methylaspartate cycle
methylsalicylate degradation
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PWY18C3-24
mixed acid fermentation
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FERMENTATION-PWY
mycolate biosynthesis
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PWYG-321
naphthalene degradation (aerobic)
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PWY-5427
neolinustatin bioactivation
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PWY-7092
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction IV (dissimilatory)
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PWY-5674
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitric oxide biosynthesis II (mammals)
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PWY-4983
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
nitrogen fixation I (ferredoxin)
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N2FIX-PWY
nitrogen remobilization from senescing leaves
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PWY-6549
noradrenaline and adrenaline degradation
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PWY-6342
nucleoside and nucleotide degradation (archaea)
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PWY-5532
octane oxidation
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
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PWY-7388
odd iso-branched-chain fatty acid biosynthesis
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PWY-8174
oleate biosynthesis II (animals and fungi)
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PWY-5996
oleate biosynthesis IV (anaerobic)
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PWY-7664
palmitate biosynthesis II (type II fatty acid synthase)
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PWY-5971
palmitate biosynthesis III
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PWY-8279
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
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PWY-6282
partial TCA cycle (obligate autotrophs)
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PWY-5913
peptido-conjugates in tissue regeneration biosynthesis
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PWY-8355
peptidoglycan recycling I
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PWY0-1261
petrobactin biosynthesis
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PWY-6289
petroselinate biosynthesis
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PWY-5367
phenolphthiocerol biosynthesis
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PWY-7742
phenylethanol biosynthesis
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PWY-5751
phenylmercury acetate degradation
phosphate acquisition
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PWY-6348
phosphopantothenate biosynthesis I
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PANTO-PWY
phytate degradation I
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PWY-4702
phytol degradation
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PWY66-389
plastoquinol-9 biosynthesis I
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PWY-1581
porphyran degradation
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PWY-6815
purine deoxyribonucleosides degradation I
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PWY-7179
purine deoxyribonucleosides degradation II
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PWY-7179-1
purine ribonucleosides degradation
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PWY0-1296
pyrrolnitrin biosynthesis
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PWY-6831
pyruvate fermentation to (S)-lactate
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PWY-5481
pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
pyruvate fermentation to propanoate I
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P108-PWY
reactive oxygen species degradation
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DETOX1-PWY-1
rebeccamycin biosynthesis
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PWY-6324
reductive glycine pathway of autotrophic CO2 fixation
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PWY-8303
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
retinol biosynthesis
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PWY-6857
Rubisco shunt
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PWY-5723
saframycin A biosynthesis
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PWY-7671
salidroside biosynthesis
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PWY-6802
salinosporamide A biosynthesis
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PWY-6627
serotonin degradation
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PWY-6313
sesamin biosynthesis
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PWY-5469
sporopollenin precursors biosynthesis
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PWY-6733
stachyose degradation
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PWY-6527
starch biosynthesis
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PWY-622
stearate biosynthesis I (animals)
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PWY-5972
stearate biosynthesis II (bacteria and plants)
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PWY-5989
stearate biosynthesis III (fungi)
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PWY3O-355
stearate biosynthesis IV
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PWY-8280
streptorubin B biosynthesis
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PWY1A0-6120
suberin monomers biosynthesis
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PWY-1121
sucrose degradation III (sucrose invertase)
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PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
sulfide oxidation IV (mitochondria)
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PWY-7927
superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
superpathway of L-aspartate and L-asparagine biosynthesis
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ASPASN-PWY
superpathway of methylsalicylate metabolism
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PWY18C3-25
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
tetracycline resistance
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PWY-7808
tetradecanoate biosynthesis (mitochondria)
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PWY66-430
tetrapyrrole biosynthesis I (from glutamate)
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PWY-5188
tetrapyrrole biosynthesis II (from glycine)
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PWY-5189
thiosulfate disproportionation IV (rhodanese)
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PWY-5350
threo-tetrahydrobiopterin biosynthesis
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PWY-6983
toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
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LIPAS-PWY
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
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PWY-6387
UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
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PWY-6386
UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing)
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PWY-7953
urea degradation II
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PWY-5704
vanillin biosynthesis I
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PWY-5665
vitamin E biosynthesis (tocopherols)
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PWY-1422
wax esters biosynthesis I
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PWY-5884
wax esters biosynthesis II
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PWY-5885
xanthine and xanthosine salvage
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SALVPURINE2-PWY
xyloglucan degradation II (exoglucanase)
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PWY-6807
cis-vaccenate biosynthesis
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PWY-5973
cyanate degradation
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CYANCAT-PWY
methylaspartate cycle
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PWY-6728
octane oxidation
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P221-PWY
phenylmercury acetate degradation
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P641-PWY
LINKS TO OTHER DATABASES (specific for soil metagenome)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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