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Information on Organism Xanthomonas oryzae pv. oryzicola

Synonyms:
ICMP 5743; NCPPB 1585; WHRI 5234; Xanthomonas campestris pv. oryzicola (Fang et al. 1957) Dye 1978; Xanthomonas campestris pv. oryzicola; Xanthomonas oryzae pv. oryzicola;
Word Map for Organism Xanthomonas oryzae pv. oryzicola
TaxTree of Organism Xanthomonas oryzae pv. oryzicola
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Xanthomonadales can be found in Brenda BRENDA pathways(order)
Xanthomonadaceae can be found in Brenda BRENDA pathways(family)
Xanthomonas can be found in Brenda BRENDA pathways(genus)
Xanthomonas oryzae can be found in Brenda BRENDA pathways(species)
Xanthomonas oryzae pv. oryzicola can be found in Brenda BRENDA pathways
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-reticuline biosynthesis
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(S)-reticuline biosynthesis I
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PWY-3581
(S)-reticuline biosynthesis II
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PWY-6133
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
4-hydroxybenzoate biosynthesis II (bacteria)
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PWY-5755
acetan biosynthesis
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PWY-6658
Alanine, aspartate and glutamate metabolism
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Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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Arginine and proline metabolism
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Ascorbate and aldarate metabolism
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ascorbate glutathione cycle
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PWY-2261
ascorbate metabolism
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ascorbate recycling (cytosolic)
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PWY-6370
aspartate and asparagine metabolism
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avenanthramide biosynthesis
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PWY-8157
bacterial bioluminescence
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PWY-7723
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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caffeine degradation III (bacteria, via demethylation)
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PWY-6538
Caffeine metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Carbon fixation in photosynthetic organisms
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cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
cinnamoyl-CoA biosynthesis
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PWY-6457
colanic acid (Escherichia coli K12) biosynthesis
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PWY-8243
Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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cytosolic NADPH production (yeast)
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PWY-7268
Drug metabolism - other enzymes
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Entner Doudoroff pathway
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Entner-Doudoroff pathway I
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PWY-8004
ephedrine biosynthesis
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PWY-5883
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
formaldehyde oxidation I
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RUMP-PWY
Fructose and mannose metabolism
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Galactose metabolism
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gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
Glutathione metabolism
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glycerol degradation to butanol
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PWY-7003
Glycerophospholipid metabolism
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Glycine, serine and threonine metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glyoxylate and dicarboxylate metabolism
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heterolactic fermentation
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P122-PWY
Histidine metabolism
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histidine metabolism
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hydroxycinnamic acid tyramine amides biosynthesis
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PWY-5474
Isoquinoline alkaloid biosynthesis
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L-ascorbate degradation II (bacterial, aerobic)
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PWY-6961
L-ascorbate degradation III
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PWY-6960
L-asparagine biosynthesis II
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ASPARAGINESYN-PWY
L-histidine degradation I
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HISDEG-PWY
L-histidine degradation II
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PWY-5028
L-histidine degradation III
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PWY-5030
L-histidine degradation VI
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HISHP-PWY
lipid A biosynthesis
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lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
Metabolic pathways
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Methane metabolism
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methanofuran biosynthesis
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PWY-5254
methanol oxidation to formaldehyde IV
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PWY-5506
methionine metabolism
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Microbial metabolism in diverse environments
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mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
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PWY-6397
non-pathway related
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O-antigen building blocks biosynthesis (E. coli)
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OANTIGEN-PWY
O-Antigen nucleotide sugar biosynthesis
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o-diquinones biosynthesis
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PWY-6752
octopamine biosynthesis
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PWY-7297
Other types of O-glycan biosynthesis
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p-HBAD biosynthesis
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PWY-7745
pectin degradation I
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PWY-7246
pectin degradation II
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PWY-7248
Pentose and glucuronate interconversions
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Pentose phosphate pathway
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pentose phosphate pathway
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pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
pentose phosphate pathway (oxidative branch) I
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OXIDATIVEPENT-PWY
phenolphthiocerol biosynthesis
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PWY-7742
Phenylalanine metabolism
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Phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
photosynthesis
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polybrominated dihydroxylated diphenyl ethers biosynthesis
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PWY-7934
polybrominated phenols biosynthesis
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PWY-7929
Purine metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
rosmarinic acid biosynthesis I
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PWY-5048
salidroside biosynthesis
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PWY-6802
sedoheptulose bisphosphate bypass
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PWY0-1517
spermidine biosynthesis I
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BSUBPOLYAMSYN-PWY
spermidine biosynthesis III
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PWY-6834
spermine biosynthesis
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ARGSPECAT-PWY
spongiadioxin C biosynthesis
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PWY-7935
Starch and sucrose metabolism
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suberin monomers biosynthesis
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
Sulfur metabolism
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superoxide radicals degradation
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DETOX1-PWY
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of glycolysis and the Entner-Doudoroff pathway
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GLYCOLYSIS-E-D
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
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PWY-7328
tetrahydromethanopterin biosynthesis
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PWY-6148
theophylline degradation
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PWY-6999
tRNA processing
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PWY0-1479
Tryptophan metabolism
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Tyrosine metabolism
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tyrosine metabolism
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ubiquinol-8 biosynthesis (late decarboxylation)
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PWY-5870
Ubiquinone and other terpenoid-quinone biosynthesis
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ubiquinone biosynthesis
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UDP-alpha-D-galactofuranose biosynthesis
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PWY-7622
xanthan biosynthesis
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PWY-6655
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Xanthomonas oryzae pv. oryzicola)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA