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TaxTree of Organism Escherichia coli str. K-12 substr. W3110
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EC NUMBER 
COMMENTARY 
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-propane-1,2-diol degradation
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PWY-7013
(S)-reticuline biosynthesis I
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PWY-3581
(S)-reticuline biosynthesis II
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PWY-6133
2-nitrotoluene degradation
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PWY-5641
3-(4-hydroxyphenyl)pyruvate biosynthesis
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PWY-5886
3-dehydroquinate biosynthesis II (archaea)
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PWY-6160
3-methylbutanol biosynthesis (engineered)
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PWY-6871
4-hydroxy-2(1H)-quinolone biosynthesis
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PWY-6661
4-hydroxybenzoate biosynthesis I (eukaryotes)
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PWY-5754
acetaldehyde biosynthesis I
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PWY-6333
acetate and ATP formation from acetyl-CoA I
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PWY0-1312
acetylene degradation (anaerobic)
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P161-PWY
acridone alkaloid biosynthesis
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PWY-5958
adenine and adenosine salvage III
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PWY-6609
adenine and adenosine salvage V
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PWY-6611
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
adenosine ribonucleotides de novo biosynthesis
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PWY-7219
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine racemization
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PWY-8072
Amaryllidacea alkaloids biosynthesis
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PWY-7826
aminopropylcadaverine biosynthesis
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PWY0-1303
ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
ansatrienin biosynthesis
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PWY-8040
assimilatory sulfate reduction II
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SULFMETII-PWY
assimilatory sulfate reduction III
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PWY-6683
assimilatory sulfate reduction IV
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PWY1ZNC-1
atromentin biosynthesis
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PWY-7518
bacterial bioluminescence
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PWY-7723
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
betanidin degradation
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PWY-5461
Bifidobacterium shunt
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P124-PWY
bisucaberin biosynthesis
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PWY-6381
butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
cadaverine biosynthesis
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PWY0-1601
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
chitin deacetylation
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PWY-7118
chlorpyrifos degradation
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PWY-8065
chorismate biosynthesis from 3-dehydroquinate
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PWY-6163
cremeomycin biosynthesis
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PWY-8296
cytosolic NADPH production (yeast)
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PWY-7268
D-arabinitol degradation I
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DARABITOLUTIL-PWY
D-glucuronate degradation I
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PWY-5525
D-lactate to cytochrome bo oxidase electron transfer
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PWY0-1565
D-mannose degradation I
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MANNCAT-PWY
D-xylose degradation I
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XYLCAT-PWY
degradation of aromatic, nitrogen containing compounds
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desferrioxamine B biosynthesis
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PWY-6376
desferrioxamine E biosynthesis
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PWY-6375
diethylphosphate degradation
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PWY-5491
dimethyl sulfide biosynthesis from methionine
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PWY-7793
dimethylsulfoniopropanoate degradation I (cleavage)
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PWY-6046
dipicolinate biosynthesis
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PWY-8088
dissimilatory sulfate reduction I (to hydrogen sufide))
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DISSULFRED-PWY
dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
ectoine biosynthesis
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P101-PWY
Entner-Doudoroff pathway I
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PWY-8004
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation IV
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PWY66-162
ethanolamine utilization
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PWY0-1477
firefly bioluminescence
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PWY-7913
folate polyglutamylation
folate transformations I
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PWY-2201
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde oxidation I
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RUMP-PWY
GABA shunt I
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GLUDEG-I-PWY
GABA shunt II
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PWY-8346
gallate degradation III (anaerobic)
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P3-PWY
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glycerol-3-phosphate to cytochrome bo oxidase electron transfer
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PWY0-1561
glycerol-3-phosphate to fumarate electron transfer
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PWY0-1582
glycine betaine degradation I
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PWY-3661
glycine betaine degradation II (mammalian)
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PWY-3661-1
glycine betaine degradation III
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PWY-8325
glycine biosynthesis I
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GLYSYN-PWY
glycine degradation (reductive Stickland reaction)
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PWY-8015
glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glyoxylate cycle
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GLYOXYLATE-BYPASS
grixazone biosynthesis
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PWY-7153
heterolactic fermentation
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P122-PWY
hydrogen to fumarate electron transfer
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PWY0-1576
hydroxycinnamic acid tyramine amides biosynthesis
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PWY-5474
incomplete reductive TCA cycle
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P42-PWY
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis VI (bacteria)
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TRPIAACAT-PWY
justicidin B biosynthesis
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PWY-6824
L-alanine degradation I
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ALADEG-PWY
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-alanine degradation VI (reductive Stickland reaction)
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PWY-8188
L-arabinose degradation II
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PWY-5515
L-arginine biosynthesis II (acetyl cycle)
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ARGSYNBSUB-PWY
L-arginine biosynthesis III (via N-acetyl-L-citrulline)
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PWY-5154
L-carnitine degradation II
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PWY-3641
L-dopa and L-dopachrome biosynthesis
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PWY-6481
L-glutamate degradation IX (via 4-aminobutanoate)
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PWY0-1305
L-histidine degradation V
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PWY-5031
L-homoserine biosynthesis
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HOMOSERSYN-PWY
L-isoleucine biosynthesis I (from threonine)
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ILEUSYN-PWY
L-isoleucine biosynthesis II
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PWY-5101
L-isoleucine biosynthesis III
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PWY-5103
L-isoleucine biosynthesis IV
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PWY-5104
L-isoleucine degradation II
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PWY-5078
L-leucine biosynthesis
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LEUSYN-PWY
L-leucine degradation III
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PWY-5076
L-lysine biosynthesis I
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DAPLYSINESYN-PWY
L-lysine biosynthesis II
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PWY-2941
L-lysine biosynthesis III
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PWY-2942
L-lysine biosynthesis VI
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PWY-5097
L-lysine degradation I
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PWY0-461
L-lysine degradation X
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PWY-6328
L-lysine fermentation to acetate and butanoate
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P163-PWY
L-malate degradation II
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PWY-7686
L-methionine biosynthesis I
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HOMOSER-METSYN-PWY
L-methionine biosynthesis IV
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PWY-7977
L-methionine degradation III
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PWY-5082
L-ornithine biosynthesis I
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GLUTORN-PWY
L-phenylalanine biosynthesis I
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PHESYN
L-phenylalanine biosynthesis III (cytosolic, plants)
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PWY-7432
L-phenylalanine degradation II (anaerobic)
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ANAPHENOXI-PWY
L-phenylalanine degradation III
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PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
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PWY-8014
L-rhamnose degradation I
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RHAMCAT-PWY
L-threonine degradation I
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PWY-5437
L-threonine degradation V
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PWY66-428
L-tryptophan biosynthesis
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TRPSYN-PWY
L-tryptophan degradation IV (via indole-3-lactate)
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TRPKYNCAT-PWY
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tryptophan degradation VIII (to tryptophol)
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PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
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PWY-8017
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine degradation I
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TYRFUMCAT-PWY
L-tyrosine degradation II
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PWY-5151
L-tyrosine degradation III
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PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
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PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
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PWY-8016
L-valine biosynthesis
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VALSYN-PWY
L-valine degradation II
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PWY-5057
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)
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PWY-8377
lupanine biosynthesis
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PWY-5468
luteolin triglucuronide degradation
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PWY-7445
matairesinol biosynthesis
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PWY-5466
Methanobacterium thermoautotrophicum biosynthetic metabolism
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PWY-6146
methanofuran biosynthesis
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PWY-5254
methanogenesis from acetate
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METH-ACETATE-PWY
methanol oxidation to formaldehyde IV
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PWY-5506
methyl parathion degradation
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PWY-5489
methylaspartate cycle
mitochondrial NADPH production (yeast)
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PWY-7269
mixed acid fermentation
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FERMENTATION-PWY
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
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PWY-6397
NAD(P)/NADPH interconversion
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PWY-5083
NADH to cytochrome bo oxidase electron transfer I
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PWY0-1335
NADH to cytochrome bo oxidase electron transfer II
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PWY0-1567
NADH to fumarate electron transfer
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PWY0-1336
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
noradrenaline and adrenaline degradation
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PWY-6342
norspermidine biosynthesis
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PWY-6562
O-antigen building blocks biosynthesis (E. coli)
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OANTIGEN-PWY
octane oxidation
octopamine biosynthesis
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PWY-7297
paraoxon degradation
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PWY-5490
parathion degradation
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PARATHION-DEGRADATION-PWY
partial TCA cycle (obligate autotrophs)
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PWY-5913
pentose phosphate pathway (oxidative branch) I
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OXIDATIVEPENT-PWY
phenylethanol biosynthesis
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PWY-5751
pheomelanin biosynthesis
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PWY-7917
phosphopantothenate biosynthesis I
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PANTO-PWY
phosphopantothenate biosynthesis II
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PWY-3961
phosphopantothenate biosynthesis III (archaea)
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PWY-6654
photorespiration I
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PWY-181
photorespiration II
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PWY-8362
photorespiration III
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PWY-8363
phytol degradation
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PWY66-389
platensimycin biosynthesis
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PWY-8179
proline to cytochrome bo oxidase electron transfer
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PWY0-1544
purine deoxyribonucleosides degradation I
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PWY-7179
purine deoxyribonucleosides degradation II
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PWY-7179-1
purine nucleobases degradation I (anaerobic)
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P164-PWY
purine nucleobases degradation II (anaerobic)
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PWY-5497
purine ribonucleosides degradation
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PWY0-1296
pyruvate decarboxylation to acetyl CoA I
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PYRUVDEHYD-PWY
pyruvate decarboxylation to acetyl CoA II
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PWY-6970
pyruvate fermentation to (R)-acetoin I
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PWY-5938
pyruvate fermentation to (R)-acetoin II
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PWY-5939
pyruvate fermentation to (R)-lactate
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PWY-8274
pyruvate fermentation to (S)-acetoin
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PWY-6389
pyruvate fermentation to (S)-lactate
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PWY-5481
pyruvate fermentation to acetate II
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PWY-5482
pyruvate fermentation to acetate IV
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PWY-5485
pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
pyruvate fermentation to propanoate I
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P108-PWY
pyruvate to cytochrome bo oxidase electron transfer
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PWY-7544
reactive oxygen species degradation
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DETOX1-PWY-1
reductive glycine pathway of autotrophic CO2 fixation
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PWY-8303
reductive monocarboxylic acid cycle
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PWY-5493
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
rosmarinic acid biosynthesis I
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PWY-5048
salidroside biosynthesis
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PWY-6802
selenate reduction
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PWY-6932
seleno-amino acid detoxification and volatilization I
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PWY-6931
seleno-amino acid detoxification and volatilization III
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PWY-6933
serotonin degradation
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PWY-6313
sesamin biosynthesis
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PWY-5469
spermidine biosynthesis II
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PWY-6559
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
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PWY0-1353
succinate to cytochrome bo oxidase electron transfer
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PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
succinate to plastoquinol oxidase
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PWY1YI0-8
sulfate activation for sulfonation
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PWY-5340
sulfide oxidation I (to sulfur globules)
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P222-PWY
sulfide oxidation III (to sulfite)
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PWY-5285
sulfite oxidation III
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PWY-5278
sulfoacetaldehyde degradation I
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PWY-1281
sulfolactate degradation II
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PWY-6637
superoxide radicals degradation
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DETOX1-PWY
superpathway of coenzyme A biosynthesis III (mammals)
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COA-PWY-1
superpathway of dimethylsulfoniopropanoate degradation
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PWY-6049
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of glycolysis and the Entner-Doudoroff pathway
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GLYCOLYSIS-E-D
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
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PWY-7328
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
tetrahydrofolate biosynthesis I
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PWY-6614
toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
tropane alkaloids biosynthesis
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PWY-5317
UDP-alpha-D-galactofuranose biosynthesis
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PWY-7622
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
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PWY-6387
UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
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PWY-6386
vancomycin resistance I
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PWY-6454
xanthommatin biosynthesis
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PWY-8249
xylitol degradation I
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LARABITOLUTIL-PWY
folate polyglutamylation
-
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PWY-2161
methylaspartate cycle
-
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PWY-6728
octane oxidation
-
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P221-PWY
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
wild-type and mutant strains, anaerobic growth conditions
-
-
LINKS TO OTHER DATABASES (specific for Escherichia coli str. K-12 substr. W3110)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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