Information on Organism Trichormus variabilis

TaxTree of Organism Trichormus variabilis
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EC NUMBER
COMMENTARY hide
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
deleted 2008. Now divided into EC 4.3.1.23 (tyrosine ammonia-lyase), EC 4.3.1.24 (phenylalanine ammonia-lyase) and EC 4.3.1.25 (phenylalanine/tyrosine ammonia-lyase)
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
Biosynthesis of secondary metabolites
-
01110
-
D-xylose degradation IV
-
-
PWY-7294
Glyoxylate and dicarboxylate metabolism
-
00630
-
L-arabinose degradation IV
-
-
PWY-7295
Metabolic pathways
-
01100
-
Microbial metabolism in diverse environments
-
01120
-
glycolate and glyoxylate degradation
glycolate and glyoxylate degradation
-
-
Biosynthesis of antibiotics
-
01130
-
Glycine, serine and threonine metabolism
-
00260
-
Methane metabolism
-
00680
-
photorespiration
-
-
PWY-181
serine metabolism
serine metabolism
-
-
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
Carbon fixation in photosynthetic organisms
-
00710
-
Carbon fixation pathways in prokaryotes
-
00720
-
Citrate cycle (TCA cycle)
-
00020
-
Cysteine and methionine metabolism
-
00270
-
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis III
-
-
PWY66-399
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
incomplete reductive TCA cycle
-
-
P42-PWY
L-aspartate degradation II
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
methylaspartate cycle
-
-
PWY-6728
mixed acid fermentation
-
-
FERMENTATION-PWY
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
00620
-
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
-
-
PWY-6969
aspartate and asparagine metabolism
aspartate and asparagine metabolism
-
-
C4 and CAM-carbon fixation
C4 and CAM-carbon fixation
-
-
citric acid cycle
citric acid cycle
-
-
L-glutamine biosynthesis III
-
-
PWY-6549
Entner-Doudoroff pathway I
-
-
PWY-8004
formaldehyde oxidation I
-
-
RUMP-PWY
Glutathione metabolism
-
00480
-
heterolactic fermentation
-
-
P122-PWY
NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
-
-
PWY-7268
Pentose phosphate pathway
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00030
-
pentose phosphate pathway (oxidative branch) I
-
-
OXIDATIVEPENT-PWY
superpathway of glycolysis and the Entner-Doudoroff pathway
-
-
GLYCOLYSIS-E-D
pentose phosphate pathway
pentose phosphate pathway
-
-
L-serine biosynthesis II
-
-
PWY-8011
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
photosynthesis
photosynthesis
-
-
Glycolysis / Gluconeogenesis
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00010
-
Butanoate metabolism
-
00650
-
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
isopropanol biosynthesis (engineered)
-
-
PWY-6876
L-glutamate degradation VII (to butanoate)
-
-
GLUDEG-II-PWY
Nitrotoluene degradation
-
00633
-
Propanoate metabolism
-
00640
-
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
pyruvate fermentation to acetate I
-
-
P142-PWY
pyruvate fermentation to acetate III
-
-
PWY-5483
pyruvate fermentation to acetate VI
-
-
PWY-5538
pyruvate fermentation to acetate VII
-
-
PWY-5600
pyruvate fermentation to acetone
-
-
PWY-6588
pyruvate fermentation to butanoate
-
-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
reductive monocarboxylic acid cycle
-
-
PWY-5493
acetate fermentation
acetate fermentation
-
-
purine metabolism
purine metabolism
-
-
Carotenoid biosynthesis
-
00906
-
carotenoid biosynthesis
carotenoid biosynthesis
-
-
4-aminobutanoate degradation V
-
-
PWY-5022
Alanine, aspartate and glutamate metabolism
-
00250
-
Arginine biosynthesis
-
00220
-
ethylene biosynthesis IV (engineered)
-
-
PWY-7126
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-glutamate degradation I
-
-
GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
-
-
P162-PWY
Nitrogen metabolism
-
00910
-
Taurine and hypotaurine metabolism
-
00430
-
alanine metabolism
alanine metabolism
-
-
glutamate and glutamine metabolism
glutamate and glutamine metabolism
-
-
Phenylalanine metabolism
-
00360
-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
00400
-
Tyrosine metabolism
-
00350
-
Arginine and proline metabolism
-
00330
-
D-Arginine and D-ornithine metabolism
-
00472
-
L-lysine degradation V
-
-
PWY-5283
Penicillin and cephalosporin biosynthesis
-
00311
-
glycine metabolism
glycine metabolism
-
-
lysine metabolism
lysine metabolism
-
-
glycine biosynthesis II
-
-
GLYCINE-SYN2-PWY
glycine cleavage
-
-
GLYCLEAV-PWY
NAD/NADH phosphorylation and dephosphorylation
-
-
PWY-5083
Nicotinate and nicotinamide metabolism
-
00760
-
NAD metabolism
NAD metabolism
-
-
superpathway of photosynthetic hydrogen production
-
-
PWY-7731
Ubiquinone and other terpenoid-quinone biosynthesis
-
00130
-
vitamin K-epoxide cycle
-
-
PWY-7999
non-pathway related
non-pathway related
-
-
Oxidative phosphorylation
-
00190
-
nitrate reduction II (assimilatory)
-
-
PWY-381
nitrate reduction VI (assimilatory)
-
-
PWY490-3
nitrate assimilation
nitrate assimilation
-
-
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
arsenite oxidation I (respiratory)
-
-
PWY-4521
Fe(II) oxidation
-
-
PWY-6692
oxidative phosphorylation
oxidative phosphorylation
-
-
photosynthesis light reactions
-
-
PWY-101
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
ethanol degradation IV
-
-
PWY66-162
methanol oxidation to formaldehyde IV
-
-
PWY-5506
reactive oxygen species degradation
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-
DETOX1-PWY-1
superoxide radicals degradation
-
-
DETOX1-PWY
Tryptophan metabolism
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00380
-
baicalein degradation (hydrogen peroxide detoxification)
-
-
PWY-7214
betanidin degradation
-
-
PWY-5461
justicidin B biosynthesis
-
-
PWY-6824
luteolin triglucuronide degradation
-
-
PWY-7445
matairesinol biosynthesis
-
-
PWY-5466
Phenylpropanoid biosynthesis
-
00940
-
sesamin biosynthesis
-
-
PWY-5469
Ascorbate and aldarate metabolism
-
00053
-
L-ascorbate degradation II (bacterial, aerobic)
-
-
PWY-6961
L-ascorbate degradation III
-
-
PWY-6960
L-ascorbate degradation V
-
-
PWY-6959
ascorbate metabolism
ascorbate metabolism
-
-
hydrogen production III
-
-
PWY-6759
hydrogen production VI
-
-
PWY-6780
hydrogen production VIII
-
-
PWY-6785
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
hydrogen production
hydrogen production
-
-
hydrogen oxidation I (aerobic)
-
-
P283-PWY
hydrogen to dimethyl sulfoxide electron transfer
-
-
PWY0-1577
hydrogen to fumarate electron transfer
-
-
PWY0-1576
hydrogen to trimethylamine N-oxide electron transfer
-
-
PWY0-1578
bacterial bioluminescence
-
-
PWY-7723
Folate biosynthesis
-
00790
-
L-phenylalanine degradation I (aerobic)
-
-
PHENYLALANINE-DEG1-PWY
L-phenylalanine degradation V
-
-
PWY-7158
L-tyrosine biosynthesis IV
-
-
PWY-6134
phenylalanine metabolism
phenylalanine metabolism
-
-
oleate biosynthesis III (cyanobacteria)
-
-
PWY-7587
linoleate biosynthesis III (cyanobacteria)
-
-
PWY-7593
ethylene biosynthesis III (microbes)
-
-
PWY-6854
Porphyrin and chlorophyll metabolism
-
00860
-
L-lysine biosynthesis I
-
-
DAPLYSINESYN-PWY
L-lysine biosynthesis II
-
-
PWY-2941
L-lysine biosynthesis III
-
-
PWY-2942
L-lysine biosynthesis VI
-
-
PWY-5097
Lysine biosynthesis
-
00300
-
Monobactam biosynthesis
-
00261
-
formate oxidation to CO2
-
-
PWY-1881
oxalate degradation III
-
-
PWY-6696
oxalate degradation VI
-
-
PWY-7985
purine nucleobases degradation I (anaerobic)
-
-
P164-PWY
reductive acetyl coenzyme A pathway
reductive acetyl coenzyme A pathway
-
-
Purine metabolism
-
00230
-
Pyrimidine metabolism
-
00240
-
Photosynthesis
-
00195
-
Chloroalkane and chloroalkene degradation
-
00625
-
nitrogen fixation I (ferredoxin)
-
-
N2FIX-PWY
3-methylarginine biosynthesis
-
-
PWY-6511
UMP biosynthesis I
-
-
PWY-5686
UMP biosynthesis II
-
-
PWY-7790
UMP biosynthesis III
-
-
PWY-7791
pyrimidine metabolism
pyrimidine metabolism
-
-
Bifidobacterium shunt
-
-
P124-PWY
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
pentose phosphate pathway (non-oxidative branch)
-
-
NONOXIPENT-PWY
Rubisco shunt
-
-
PWY-5723
C5-Branched dibasic acid metabolism
-
00660
-
L-isoleucine biosynthesis I (from threonine)
-
-
ILEUSYN-PWY
L-isoleucine biosynthesis II
-
-
PWY-5101
L-isoleucine biosynthesis III
-
-
PWY-5103
L-isoleucine biosynthesis IV
-
-
PWY-5104
L-valine biosynthesis
-
-
VALSYN-PWY
Pantothenate and CoA biosynthesis
-
00770
-
pyruvate fermentation to (R)-acetoin I
-
-
PWY-5938
pyruvate fermentation to (R)-acetoin II
-
-
PWY-5939
pyruvate fermentation to (S)-acetoin
-
-
PWY-6389
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
Valine, leucine and isoleucine biosynthesis
-
00290
-
acetoin degradation
acetoin degradation
-
-
isoleucine metabolism
isoleucine metabolism
-
-
valine metabolism
valine metabolism
-
-
2-amino-3-hydroxycyclopent-2-enone biosynthesis
-
-
PWY-7536
tetrapyrrole biosynthesis II (from glycine)
-
-
PWY-5189
heme metabolism
heme metabolism
-
-
bryostatin biosynthesis
-
-
PWY-8047
Fatty acid biosynthesis
-
00061
-
fatty acid biosynthesis (plant mitochondria)
-
-
PWY-6799
fatty acid biosynthesis initiation I
-
-
PWY-4381
mupirocin biosynthesis
-
-
PWY-8012
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
-
-
PWY-7388
pederin biosynthesis
-
-
PWY-8049
lipid metabolism
lipid metabolism
-
-
(5Z)-dodecenoate biosynthesis I
-
-
PWY0-862
fatty acid biosynthesis initiation II
-
-
PWY-5966
fatty acid biosynthesis initiation III
-
-
PWY-5965
fatty acid elongation -- saturated
-
-
FASYN-ELONG-PWY
oleate biosynthesis IV (anaerobic)
-
-
PWY-7664
palmitate biosynthesis I (animals and fungi)
-
-
PWY-5994
palmitate biosynthesis II (bacteria and plants)
-
-
PWY-5971
superpathway of fatty acid biosynthesis initiation (E. coli)
-
-
FASYN-INITIAL-PWY
Glycerolipid metabolism
-
00561
-
Starch and sucrose metabolism
-
00500
-
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose biosynthesis II
-
-
PWY-7238
sucrose biosynthesis III
-
-
PWY-7347
galactolipid biosynthesis II
-
-
PWY-7666
type I lipoteichoic acid biosynthesis (S. aureus)
-
-
PWY-7817
chorismate biosynthesis from 3-dehydroquinate
-
-
PWY-6163
chorismate metabolism
chorismate metabolism
-
-
baumannoferrin biosynthesis
-
-
PWY-7988
ectoine biosynthesis
-
-
P101-PWY
ectoine degradation
-
-
PWY-7855
norspermidine biosynthesis
-
-
PWY-6562
pyoverdine I biosynthesis
-
-
PWY-6409
rhizobactin 1021 biosynthesis
-
-
PWY-761
threonine metabolism
threonine metabolism
-
-
3-dehydroquinate biosynthesis II (archaea)
-
-
PWY-6160
grixazone biosynthesis
-
-
PWY-7153
L-homoserine biosynthesis
-
-
HOMOSERSYN-PWY
L-methionine biosynthesis IV (archaea)
-
-
PWY-7977
spermidine biosynthesis II
-
-
PWY-6559
retinol biosynthesis
-
-
PWY-6857
triacylglycerol degradation
-
-
LIPAS-PWY
chlorogenic acid degradation
-
-
PWY-6781
diethylphosphate degradation
-
-
PWY-5491
NAD phosphorylation and dephosphorylation
-
-
NADPHOS-DEPHOS-PWY
NAD salvage pathway III (to nicotinamide riboside)
-
-
NAD-BIOSYNTHESIS-II
Thiamine metabolism
-
00730
-
sulfopterin metabolism
sulfopterin metabolism
-
-
Fructose and mannose metabolism
-
00051
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis
glycolysis
-
-
degradation of pentoses
degradation of pentoses
-
-
cellulose degradation II (fungi)
-
-
PWY-6788
cellulose degradation
cellulose degradation
-
-
cyanophycin metabolism
-
-
PWY-7052
Peptidoglycan biosynthesis
-
00550
-
peptidoglycan biosynthesis II (staphylococci)
-
-
PWY-5265
peptidoglycan biosynthesis IV (Enterococcus faecium)
-
-
PWY-6471
peptidoglycan maturation (meso-diaminopimelate containing)
-
-
PWY0-1586
peptidoglycan biosynthesis
peptidoglycan biosynthesis
-
-
nocardicin A biosynthesis
-
-
PWY-7797
acrylonitrile degradation I
-
-
PWY-7308
Aminobenzoate degradation
-
00627
-
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
Styrene degradation
-
00643
-
arginine metabolism
arginine metabolism
-
-
degradation of aromatic, nitrogen containing compounds
degradation of aromatic, nitrogen containing compounds
-
-
IAA biosynthesis
IAA biosynthesis
-
-
aminopropylcadaverine biosynthesis
-
-
PWY0-1303
bisucaberin biosynthesis
-
-
PWY-6381
cadaverine biosynthesis
-
-
PWY0-1601
desferrioxamine B biosynthesis
-
-
PWY-6376
desferrioxamine E biosynthesis
-
-
PWY-6375
L-lysine degradation I
-
-
PWY0-461
L-lysine degradation X
-
-
PWY-6328
lupanine biosynthesis
-
-
PWY-5468
Lysine degradation
-
00310
-
Tropane, piperidine and pyridine alkaloid biosynthesis
-
00960
-
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
ethylene biosynthesis V (engineered)
-
-
PWY-7124
Methanobacterium thermoautotrophicum biosynthetic metabolism
-
-
PWY-6146
gluconeogenesis
gluconeogenesis
-
-
nucleoside and nucleotide degradation (archaea)
-
-
PWY-5532
polyamine pathway
polyamine pathway
-
-
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
cyanate degradation
-
-
CYANCAT-PWY
glyoxylate assimilation
-
-
PWY-5744
cyanate degradation
cyanate degradation
-
-
gallate biosynthesis
-
-
PWY-6707
quinate degradation I
-
-
QUINATEDEG-PWY
quinate degradation II
-
-
PWY-6416
tryptophan metabolism
tryptophan metabolism
-
-
homocysteine and cysteine interconversion
-
-
PWY-801
hydrogen sulfide biosynthesis II (mammalian)
-
-
PWY66-426
L-cysteine biosynthesis III (from L-homocysteine)
-
-
HOMOCYSDEGR-PWY
L-cysteine biosynthesis VI (from L-methionine)
-
-
PWY-I9
cysteine metabolism
cysteine metabolism
-
-
tetrapyrrole biosynthesis I (from glutamate)
-
-
PWY-5188
Acarbose and validamycin biosynthesis
-
00525
-
gadusol biosynthesis
-
-
PWY-7752
validamycin biosynthesis
-
-
PWY-5818
shinorine biosynthesis
-
-
PWY-7751
Histidine metabolism
-
00340
-
L-histidine degradation I
-
-
HISDEG-PWY
L-histidine degradation II
-
-
PWY-5028
L-histidine degradation III
-
-
PWY-5030
L-histidine degradation VI
-
-
HISHP-PWY
histidine metabolism
histidine metabolism
-
-
L-threonine degradation V
-
-
PWY66-428
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
-
-
PWY-6444
cinnamoyl-CoA biosynthesis
-
-
PWY-6457
ephedrine biosynthesis
-
-
PWY-5883
phenylpropanoid biosynthesis, initial reactions
-
-
PWY1F-467
rosmarinic acid biosynthesis I
-
-
PWY-5048
suberin monomers biosynthesis
-
-
PWY-1121
phenylpropanoid biosynthesis
phenylpropanoid biosynthesis
-
-
suberin monomers biosynthesis
suberin monomers biosynthesis
-
-
Amino sugar and nucleotide sugar metabolism
-
00520
-
N-acetylneuraminate and N-acetylmannosamine degradation II
-
-
PWY-7581
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
-
-
PWY-7900
trehalose biosynthesis IV
-
-
PWY-2622
metabolism of disaccharids
metabolism of disaccharids
-
-
vitamin E biosynthesis (tocopherols)
-
-
PWY-1422
vitamin E biosynthesis (tocotrienols)
-
-
PWY-7436
vitamin E metabolism
vitamin E metabolism
-
-
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
L-glutamine biosynthesis I
-
-
GLNSYN-PWY
nitrate reduction V (assimilatory)
-
-
PWY-5675
beta-Alanine metabolism
-
00410
-
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
pantothenate biosynthesis
pantothenate biosynthesis
-
-
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
D-lactate to cytochrome bo oxidase electron transfer
-
-
PWY0-1565
glycerol-3-phosphate to cytochrome bo oxidase electron transfer
-
-
PWY0-1561
NADH to cytochrome bo oxidase electron transfer II
-
-
PWY0-1567
proline to cytochrome bo oxidase electron transfer
-
-
PWY0-1544
pyruvate to cytochrome bo oxidase electron transfer
-
-
PWY-7544
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
ammonia oxidation IV (autotrophic ammonia oxidizers)
-
-
PWY-7082
formate to nitrite electron transfer
-
-
PWY0-1585
nitrate reduction X (dissimilatory, periplasmic)
-
-
PWY0-1584
oleandomycin activation/inactivation
-
-
PWY-6972
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