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Information on Organism Thermobifida fusca

Synonyms:
ATCC 27730; CIP 105594; culture-collection:NRRL:B:8184; DSM 43792; HAMBI 1548; HAMBI 483; IFO 14071; JCM 3263; NBRC 14071; NRRL B-8184; strain 190 Th; Thermobifida fusca (McCarthy and Cross 1984) Zhang et al. 1998; Thermobifida fusca (McCarthy and Cross, 1984) Zhang et al. 1998 emend. Nouioui et al. 2018; Thermobifida fusca; Thermomonospora fusca (ex Henssen 1957) McCarthy and Cross 1984; Thermomonospora fusca; "Thermonospora fusca" Henssen 1957; Thermonospora fusca; VKM Ac-1952;
Word Map for Organism Thermobifida fusca
TaxTree of Organism Thermobifida fusca
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Terrabacteria group can be found in Brenda (clade)
Actinobacteria can be found in Brenda BRENDA pathways(phylum)
Actinomycetia can be found in Brenda BRENDA pathways(class)
Streptosporangiales can be found in Brenda (order)
Nocardiopsaceae can be found in Brenda BRENDA pathways(family)
Thermobifida can be found in Brenda BRENDA pathways(genus)
Thermobifida fusca can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
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PWY-6717
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
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PWY-7216
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,5-anhydrofructose degradation
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PWY-6992
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
2-arachidonoylglycerol biosynthesis
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PWY-8052
2-carboxy-1,4-naphthoquinol biosynthesis
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PWY-5837
2-methyl-branched fatty acid beta-oxidation
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PWY-8181
2-methylpropene degradation
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PWY-7778
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
3-phenylpropanoate degradation
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P281-PWY
4-aminobutanoate degradation V
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PWY-5022
4-hydroxybenzoate biosynthesis III (plants)
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PWY-6435
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetyl-CoA fermentation to butanoate
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PWY-5676
adipate biosynthesis
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PWY-8347
adipate degradation
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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alpha-tomatine degradation
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PWY18C3-5
Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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-
Aminobenzoate degradation
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-
ammonia oxidation II (anaerobic)
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P303-PWY
amygdalin and prunasin degradation
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PWY-6011
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
anapleurotic synthesis of oxalacetate
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androgen and estrogen metabolism
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androstenedione degradation I (aerobic)
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PWY-6944
androstenedione degradation II (anaerobic)
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PWY-8152
Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine biosynthesis
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arginine metabolism
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arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
assimilatory sulfate reduction IV
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PWY1ZNC-1
bacterial bioluminescence
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PWY-7723
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
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PWY-6443
Benzoate degradation
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benzoyl-CoA biosynthesis
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PWY-6458
benzoyl-CoA degradation I (aerobic)
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PWY-1361
beta-(1,4)-mannan degradation
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PWY-7456
beta-Alanine metabolism
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betanidin degradation
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PWY-5461
Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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-
Biosynthesis of siderophore group nonribosomal peptides
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-
Biosynthesis of unsaturated fatty acids
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bupropion degradation
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-
PWY66-241
butanoate fermentation
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-
Butanoate metabolism
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C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
caffeine degradation III (bacteria, via demethylation)
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PWY-6538
Caffeine metabolism
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Caprolactam degradation
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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cellulose and hemicellulose degradation (cellulolosome)
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PWY-6784
cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
cholesterol degradation to androstenedione I (cholesterol oxidase)
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PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
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PWY-6946
Citrate cycle (TCA cycle)
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citric acid cycle
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CO2 fixation in Crenarchaeota
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conversion of succinate to propanoate
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PWY0-43
coumarin biosynthesis (via 2-coumarate)
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PWY-5176
crotonate fermentation (to acetate and cyclohexane carboxylate)
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PWY-7401
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
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PWY-7854
cutin biosynthesis
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PWY-321
Cyanoamino acid metabolism
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-
cyclohexanol degradation
Cysteine and methionine metabolism
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-
cysteine metabolism
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-
d-mannose degradation
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-
d-xylose degradation
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-
D-xylose degradation I
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XYLCAT-PWY
degradation of pentoses
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denitrification
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Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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Entner Doudoroff pathway
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-
Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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PWY-7124
Ether lipid metabolism
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fatty acid beta-oxidation I (generic)
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FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
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PWY-5136
fatty acid beta-oxidation VI (mammalian peroxisome)
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PWY66-391
Fatty acid degradation
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-
Fatty acid elongation
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-
fatty acid salvage
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PWY-7094
Fe(II) oxidation
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PWY-6692
firefly bioluminescence
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PWY-7913
formaldehyde assimilation I (serine pathway)
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PWY-1622
formate oxidation to CO2
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PWY-1881
fructan degradation
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PWY-862
Fructose and mannose metabolism
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-
GABA shunt I
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GLUDEG-I-PWY
GABA shunt II
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PWY-8346
Galactose metabolism
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-
gallate degradation III (anaerobic)
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P3-PWY
Geraniol degradation
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-
ginsenoside metabolism
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-
glucocorticoid biosynthesis
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PWY66-381
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
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DHGLUCONATE-PYR-CAT-PWY
glutamate and glutamine metabolism
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glutaryl-CoA degradation
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PWY-5177
Glutathione metabolism
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glutathione metabolism
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glycerol degradation to butanol
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PWY-7003
Glycerolipid metabolism
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Glycerophospholipid metabolism
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glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glycogen metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glycosaminoglycan degradation
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-
Glyoxylate and dicarboxylate metabolism
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-
glyoxylate cycle
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GLYOXYLATE-BYPASS
gossypol biosynthesis
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PWY-5773
heterolactic fermentation
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P122-PWY
incomplete reductive TCA cycle
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P42-PWY
Inositol phosphate metabolism
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inulin degradation
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PWY-8314
Isoquinoline alkaloid biosynthesis
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-
itaconate degradation
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PWY-5749
justicidin B biosynthesis
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PWY-6824
L-arginine degradation V (arginine deiminase pathway)
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ARGDEGRAD-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-ascorbate biosynthesis VIII (engineered pathway)
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PWY-7165
L-glutamate degradation IX (via 4-aminobutanoate)
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PWY0-1305
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
linamarin degradation
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PWY-3121
Linoleic acid metabolism
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-
linustatin bioactivation
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PWY-7091
lipid A biosynthesis
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-
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
lipid metabolism
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lotaustralin degradation
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PWY-6002
luteolin triglucuronide degradation
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-
PWY-7445
Lysine degradation
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-
malate/L-aspartate shuttle pathway
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-
MALATE-ASPARTATE-SHUTTLE-PWY
manganese oxidation I
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-
PWY-6591
matairesinol biosynthesis
-
-
PWY-5466
melatonin degradation I
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-
PWY-6398
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
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-
Methanobacterium thermoautotrophicum biosynthetic metabolism
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PWY-6146
methanol oxidation to formaldehyde IV
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-
PWY-5506
methyl indole-3-acetate interconversion
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PWY-6303
methyl ketone biosynthesis (engineered)
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-
PWY-7007
methyl tert-butyl ether degradation
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PWY-7779
methylaspartate cycle
methylsalicylate degradation
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PWY18C3-24
Microbial metabolism in diverse environments
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-
mineralocorticoid biosynthesis
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PWY66-382
mixed acid fermentation
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FERMENTATION-PWY
mono-trans, poly-cis decaprenyl phosphate biosynthesis
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-
PWY-6383
NADPH to cytochrome c oxidase via plastocyanin
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-
PWY-8271
neolinustatin bioactivation
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PWY-7092
nicotine degradation IV
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-
PWY66-201
nicotine degradation V
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-
PWY66-221
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
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-
PWY-6748
nitrifier denitrification
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-
PWY-7084
nitrite-dependent anaerobic methane oxidation
-
-
PWY-6523
Nitrogen metabolism
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-
non-pathway related
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-
o-diquinones biosynthesis
-
-
PWY-6752
oleandomycin activation/inactivation
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-
PWY-6972
oleate beta-oxidation
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-
PWY0-1337
oleate biosynthesis II (animals and fungi)
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PWY-5996
Other glycan degradation
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-
oxalate degradation III
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-
PWY-6696
oxalate degradation VI
-
-
PWY-7985
Oxidative phosphorylation
-
-
oxidative phosphorylation
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-
Pantothenate and CoA biosynthesis
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-
pantothenate biosynthesis
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-
Pentose and glucuronate interconversions
-
-
Pentose phosphate pathway
-
-
phenylacetate degradation (aerobic)
-
-
phenylacetate degradation I (aerobic)
-
-
PWY0-321
Phenylpropanoid biosynthesis
-
-
phosphatidylcholine biosynthesis VI
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-
PWY-6826
phosphatidylethanolamine bioynthesis
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-
phospholipases
-
-
LIPASYN-PWY
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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-
PWY-7218
plasmalogen biosynthesis I (aerobic)
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-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
platensimycin biosynthesis
-
-
PWY-8179
Polycyclic aromatic hydrocarbon degradation
-
-
polyethylene terephthalate degradation
-
-
PWY-7794
Propanoate metabolism
-
-
propanol degradation
-
-
propanoyl CoA degradation I
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-
PROPIONMET-PWY
propionate fermentation
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-
protein Pupylation and dePupylation
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-
PWY-7893
Purine metabolism
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-
purine nucleobases degradation I (anaerobic)
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-
P164-PWY
purine nucleobases degradation II (anaerobic)
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-
PWY-5497
pyruvate fermentation to butanoate
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-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to butanol II (engineered)
-
-
PWY-6883
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
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-
DETOX1-PWY-1
reductive acetyl coenzyme A pathway
-
-
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
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-
PWY-6857
Retinol metabolism
-
-
rubber biosynthesis
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PWY-5815
Rubisco shunt
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-
PWY-5723
saframycin A biosynthesis
-
-
PWY-7671
sesamin biosynthesis
-
-
PWY-5469
Sphingolipid metabolism
-
-
sporopollenin precursors biosynthesis
-
-
PWY-6733
Starch and sucrose metabolism
-
-
starch biosynthesis
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-
PWY-622
starch degradation
-
-
starch degradation II
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-
PWY-6724
starch degradation III
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-
PWY-6731
starch degradation IV
-
-
PWY-6735
stearate biosynthesis I (animals)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
Steroid hormone biosynthesis
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-
suberin monomers biosynthesis
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-
PWY-1121
succinate fermentation to butanoate
-
-
PWY-5677
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
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-
PWY1YI0-3
sucrose degradation III (sucrose invertase)
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PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
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-
PWY66-373
sulfate activation for sulfonation
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PWY-5340
sulfate reduction
-
-
Sulfur metabolism
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-
superoxide radicals degradation
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-
DETOX1-PWY
superpathway of glucose and xylose degradation
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-
PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
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-
PWY-561
superpathway of methylsalicylate metabolism
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-
PWY18C3-25
Taurine and hypotaurine metabolism
-
-
taurine biosynthesis I
-
-
PWY-5331
taurine biosynthesis II
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-
PWY-7850
TCA cycle I (prokaryotic)
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-
TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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-
PWY-6969
TCA cycle VIII (Chlamydia)
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-
TCA-1
tea aroma glycosidic precursor bioactivation
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-
PWY-7114
Terpenoid backbone biosynthesis
-
-
theophylline degradation
-
-
PWY-6999
Toluene degradation
-
-
trehalose biosynthesis IV
-
-
PWY-2622
trehalose biosynthesis V
-
-
PWY-2661
triacylglycerol degradation
-
-
LIPAS-PWY
tRNA splicing II
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-
PWY-7803
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
Tyrosine metabolism
-
-
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
Valine, leucine and isoleucine degradation
-
-
valproate beta-oxidation
-
-
PWY-8182
vanillin biosynthesis I
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-
PWY-5665
vitamin K metabolism
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-
xanthommatin biosynthesis
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-
PWY-8249
xyloglucan degradation II (exoglucanase)
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-
PWY-6807
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LINKS TO OTHER DATABASES (specific for Thermobifida fusca)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA