Information on Organism Ruegeria pomeroyi

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

(S)-lactate fermentation to propanoate, acetate and hydrogen

-

PWY-8086

(S)-propane-1,2-diol degradation

-

PWY-7013

1,3-propanediol biosynthesis (engineered)

-

PWY-7385

2,5-xylenol and 3,5-xylenol degradation

-

PWY-7698

3-hydroxypropanoate cycle

-

PWY-5743

3-hydroxypropanoate/4-hydroxybutanate cycle

-

PWY-5789

3-methylbutanol biosynthesis (engineered)

-

PWY-6871

3-phenylpropionate degradation

-

4-hydroxymandelate degradation

-

4-sulfocatechol degradation

-

PWY-6041

acetaldehyde biosynthesis I

-

PWY-6333

acetate and ATP formation from acetyl-CoA I

-

PWY0-1312

acetate fermentation

-

acetyl-CoA fermentation to butanoate

-

PWY-5676

acetylene degradation (anaerobic)

-

P161-PWY

acrylate degradation II

-

PWY-8180

adenosine ribonucleotides de novo biosynthesis

-

PWY-7219

aerobic toluene degradation

-

alanine metabolism

-

Alanine, aspartate and glutamate metabolism

-

00250

-

alpha-Linolenic acid metabolism

-

00592

-

Amino sugar and nucleotide sugar metabolism

-

00520

-

Aminoacyl-tRNA biosynthesis

-

00970

-

anaerobic energy metabolism (invertebrates, mitochondrial)

-

PWY-7384

Arginine and proline metabolism

-

00330

-

autoinducer AI-1 biosynthesis

-

PWY-6157

baicalein degradation (hydrogen peroxide detoxification)

-

PWY-7214

Benzoate degradation

-

00362

-

beta-Alanine metabolism

-

00410

-

betanidin degradation

-

PWY-5461

Bifidobacterium shunt

-

P124-PWY

Biosynthesis of secondary metabolites

-

01110

-

butanoate fermentation

-

Butanoate metabolism

-

00650

-

butanol and isobutanol biosynthesis (engineered)

-

PWY-7396

Carbon fixation pathways in prokaryotes

-

00720

-

Chloroalkane and chloroalkene degradation

-

00625

-

choline degradation I

-

CHOLINE-BETAINE-ANA-PWY

choline-O-sulfate degradation

-

P542-PWY

CO2 fixation in Crenarchaeota

-

coenzyme M biosynthesis

-

coenzyme M biosynthesis I

-

P261-PWY

coenzyme M biosynthesis II

-

PWY-6643

crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)

-

PWY-7854

Cysteine and methionine metabolism

-

00270

-

cysteine metabolism

-

D-Amino acid metabolism

-

00470

-

denitrification

-

diethylphosphate degradation

-

PWY-5491

dimethyl sulfide degradation I

-

PWY-6047

dimethylsulfoniopropanoate degradation I (cleavage)

-

PWY-6046

dimethylsulfoniopropanoate degradation III (demethylation)

-

PWY-6052

Drug metabolism - cytochrome P450

-

00982

-

ethanol degradation I

-

ETOH-ACETYLCOA-ANA-PWY

ethanol degradation II

-

PWY66-21

ethanol degradation IV

-

PWY66-162

ethanol fermentation

-

ethanolamine utilization

-

PWY0-1477

ethylmalonyl-CoA pathway

Fatty acid degradation

-

00071

-

Folate biosynthesis

-

00790

-

folate polyglutamylation

folate transformations I

-

PWY-2201

folate transformations II (plants)

-

PWY-3841

formate assimilation into 5,10-methylenetetrahydrofolate

-

PWY-1722

Galactose metabolism

-

00052

-

gallate degradation

-

gallate degradation III (anaerobic)

-

P3-PWY

GDP-alpha-D-glucose biosynthesis

-

PWY-5661

gentisate degradation I

-

PWY-6223

gentisate degradation II

-

PWY-7469

glucose and glucose-1-phosphate degradation

-

GLUCOSE1PMETAB-PWY

glycine betaine biosynthesis

-

glycine betaine biosynthesis I (Gram-negative bacteria)

-

BETSYN-PWY

Glycine, serine and threonine metabolism

-

00260

-

glycogen degradation I

-

GLYCOCAT-PWY

glycogen degradation II

-

PWY-5941

glycogen metabolism

-

Glycolysis / Gluconeogenesis

-

00010

-

glycolysis I (from glucose 6-phosphate)

-

GLYCOLYSIS

glycolysis III (from glucose)

-

ANAGLYCOLYSIS-PWY

Glyoxylate and dicarboxylate metabolism

-

00630

-

glyoxylate assimilation

-

PWY-5744

heterolactic fermentation

-

P122-PWY

Histidine metabolism

-

00340

-

histidine metabolism

-

hypotaurine degradation

-

PWY-7387

isoprene biosynthesis II (engineered)

-

PWY-7391

justicidin B biosynthesis

-

PWY-6824

L-alanine degradation IV

-

PWY1-2

L-isoleucine degradation II

-

PWY-5078

L-leucine degradation III

-

PWY-5076

L-lysine degradation I

-

PWY0-461

L-lysine degradation II (L-pipecolate pathway)

-

PWY66-425

L-lysine degradation V

-

PWY-5283

L-lysine degradation X

-

PWY-6328

L-lysine degradation XI

-

LYSINE-DEG1-PWY

L-lysine fermentation to acetate and butanoate

-

P163-PWY

L-methionine degradation III

-

PWY-5082

L-phenylalanine degradation III

-

PWY-5079

L-tryptophan degradation V (side chain pathway)

-

PWY-3162

L-tyrosine degradation III

-

PWY3O-4108

L-valine degradation II

-

PWY-5057

lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)

-

PWY-8377

leucine metabolism

-

lipid A biosynthesis

-

lipid IVA biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing)

-

PWY2B4Q-4

lipid IVA biosynthesis (E. coli)

-

NAGLIPASYN-PWY

lipid IVA biosynthesis (generic)

-

PWY-8283

lipid IVA biosynthesis (H. pylori)

-

PWYI-14

lipid IVA biosynthesis (P. gingivalis)

-

PWY-8245

lipid IVA biosynthesis (P. putida)

-

PWY-8073

lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)

-

PWY2G6Z-2

lipid metabolism

-

Lipopolysaccharide biosynthesis

-

00540

-

luteolin triglucuronide degradation

-

PWY-7445

Lysine degradation

-

00310

-

lysine metabolism

-

matairesinol biosynthesis

-

PWY-5466

Metabolic pathways

-

01100

-

Metabolism of xenobiotics by cytochrome P450

-

00980

-

Methane metabolism

-

00680

-

methanogenesis from acetate

-

METH-ACETATE-PWY

methanol oxidation to formaldehyde IV

-

PWY-5506

methionine metabolism

-

methylaspartate cycle

methylthiopropanoate degradation I (cleavage)

-

PWY-6048

mevalonate degradation

-

PWY-5074

mevalonate metabolism

-

mevalonate pathway I (eukaryotes and bacteria)

-

PWY-922

mevalonate pathway II (haloarchaea)

-

PWY-6174

mevalonate pathway III (Thermoplasma)

-

PWY-7524

mevalonate pathway IV (archaea)

-

PWY-8125

Microbial metabolism in diverse environments

-

01120

-

mixed acid fermentation

-

FERMENTATION-PWY

mycolate biosynthesis

-

PWYG-321

Naphthalene degradation

-

00626

-

Neomycin, kanamycin and gentamicin biosynthesis

-

00524

-

nitrate reduction I (denitrification)

-

DENITRIFICATION-PWY

nitrate reduction VII (denitrification)

-

PWY-6748

nitrifier denitrification

-

PWY-7084

Nitrogen metabolism

-

00910

-

non-pathway related

-

noradrenaline and adrenaline degradation

-

PWY-6342

oleandomycin activation/inactivation

-

PWY-6972

One carbon pool by folate

-

00670

-

ornithine metabolism

-

Oxidative phosphorylation

-

00190

-

Phenylalanine metabolism

-

00360

-

phenylalanine metabolism

-

phenylethanol biosynthesis

-

PWY-5751

Phenylpropanoid biosynthesis

-

00940

-

phytol degradation

-

PWY66-389

Polycyclic aromatic hydrocarbon degradation

-

00624

-

polyphosphate metabolism

-

PWY-8138

Propanoate metabolism

-

00640

-

propanol degradation

-

propanoyl CoA degradation I

-

PROPIONMET-PWY

propionate fermentation

-

protocatechuate degradation II (ortho-cleavage pathway)

-

PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY

Purine metabolism

-

00230

-

purine metabolism

-

purine nucleobases degradation II (anaerobic)

-

PWY-5497

putrescine degradation I

-

PUTDEG-PWY

putrescine degradation IV

-

PWY-2

putrescine degradation V

-

PWY-3

pyruvate fermentation to acetate II

-

PWY-5482

pyruvate fermentation to acetate IV

-

PWY-5485

pyruvate fermentation to ethanol I

-

PWY-5480

pyruvate fermentation to ethanol II

-

PWY-5486

pyruvate fermentation to ethanol III

-

PWY-6587

pyruvate fermentation to isobutanol (engineered)

-

PWY-7111

Pyruvate metabolism

-

00620

-

reactive oxygen species degradation

-

DETOX1-PWY-1

reductive acetyl coenzyme A pathway

-

reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)

-

CODH-PWY

reductive glycine pathway of autotrophic CO2 fixation

-

PWY-8303

Retinol metabolism

-

00830

-

salicylate degradation IV

-

PWY-6640

salidroside biosynthesis

-

PWY-6802

serotonin degradation

-

PWY-6313

serotonin metabolism

-

sesamin biosynthesis

-

PWY-5469

Sphingolipid metabolism

-

00600

-

Starch and sucrose metabolism

-

00500

-

Steroid hormone biosynthesis

-

00140

-

Streptomycin biosynthesis

-

00521

-

sucrose biosynthesis II

-

PWY-7238

sucrose degradation III (sucrose invertase)

-

PWY-621

sulfate reduction

-

sulfite oxidation I

-

PWY-5276

sulfoacetaldehyde degradation I

-

PWY-1281

sulfolactate degradation II

-

PWY-6637

sulfolactate degradation III

-

PWY-6638

sulfopterin metabolism

-

Sulfur metabolism

-

00920

-

superoxide radicals degradation

-

DETOX1-PWY

superpathway of dimethylsulfoniopropanoate degradation

-

PWY-6049

superpathway of fermentation (Chlamydomonas reinhardtii)

-

PWY4LZ-257

Taurine and hypotaurine metabolism

-

00430

-

taurine degradation I

-

PWY-1263

Terpenoid backbone biosynthesis

-

00900

-

Thiamine metabolism

-

00730

-

trehalose degradation I (low osmolarity)

-

TREDEGLOW-PWY

trehalose degradation II (cytosolic)

-

PWY0-1182

trehalose degradation IV

-

PWY-2722

trehalose degradation V

-

PWY-2723

trimethylamine degradation

-

PWY-6968

trimethylamine N-oxide biosynthesis

-

PWY-8292

tRNA charging

-

TRNA-CHARGING-PWY

Tropane, piperidine and pyridine alkaloid biosynthesis

-

00960

-

Tryptophan metabolism

-

00380

-

tryptophan metabolism

-

Tyrosine metabolism

-

00350

-

tyrosine metabolism

-

UDP-N-acetyl-D-galactosamine biosynthesis II

-

PWY-5514

UDP-N-acetyl-D-glucosamine biosynthesis II

-

UDPNACETYLGALSYN-PWY

valine metabolism

-

Valine, leucine and isoleucine degradation

-

00280

-

xanthommatin biosynthesis

-

PWY-8249

-

culture condition:cysteate-grown cell

Ruegeria pomeroyi

Q5LX18

effectively absent in acetate grown cells

695918

culture condition:D-glucose-grown cell

Ruegeria pomeroyi

Q5LS56

low enzyme activity

745800

culture condition:dimethylsulphoniopropionate-grown cells

Ruegeria pomeroyi

Q5LS56

high enzyme activity

745800

culture condition:taurine-grown cell

-

-

NCBI: Taxonomy, PubMed, Genome

SILVA: 16S/18S rRNA, 23S/28S rRNA

: 13784