Any feedback?
Please rate this page
(organism.php)
(0/150)

BRENDA support

Information on Organism Pyrococcus abyssi

TaxTree of Organism Pyrococcus abyssi
Condensed Tree View
Archaea can be found in Brenda BRENDA pathways(superkingdom)
Please wait a moment until all data is loaded. This message will disappear when all data is loaded.
EC NUMBER
COMMENTARY hide
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
-
-
PWY-6717
(5R)-carbapenem carboxylate biosynthesis
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
3-dehydroquinate biosynthesis I
-
-
PWY-6164
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
-
-
PWY-7286
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
-
-
PWY-7832
ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide
-
-
PWY-7831
acetaldehyde biosynthesis I
-
-
PWY-6333
acetylene degradation (anaerobic)
-
-
P161-PWY
acrylonitrile degradation I
-
-
PWY-7308
acrylonitrile degradation II
-
-
PWY-7309
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
Alanine, aspartate and glutamate metabolism
-
-
aldoxime degradation
-
-
P345-PWY
alpha-Linolenic acid metabolism
-
-
Amino sugar and nucleotide sugar metabolism
-
-
Aminoacyl-tRNA biosynthesis
-
-
Aminobenzoate degradation
-
-
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
arginine metabolism
-
-
aspartate and asparagine metabolism
-
-
assimilatory sulfate reduction II
-
-
SULFMETII-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
assimilatory sulfate reduction IV
-
-
PWY1ZNC-1
ATP biosynthesis
-
-
PWY-7980
beta-Alanine metabolism
-
-
Biosynthesis of secondary metabolites
-
-
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
Carbon fixation pathways in prokaryotes
-
-
cellulose and hemicellulose degradation (cellulolosome)
-
-
PWY-6784
Chloroalkane and chloroalkene degradation
-
-
chorismate metabolism
-
-
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
coenzyme A biosynthesis I (bacteria)
-
-
COA-PWY
coenzyme A biosynthesis II (eukaryotic)
-
-
PWY-7851
coenzyme A biosynthesis III (archaea)
-
-
PWY-8342
coenzyme A metabolism
-
-
creatine phosphate biosynthesis
-
-
PWY-6158
Cyanoamino acid metabolism
-
-
Cysteine and methionine metabolism
-
-
d-xylose degradation
-
-
degradation of aromatic, nitrogen containing compounds
-
-
degradation of pentoses
-
-
diethylphosphate degradation
-
-
PWY-5491
dissimilatory sulfate reduction I (to hydrogen sufide))
-
-
DISSULFRED-PWY
Drug metabolism - cytochrome P450
-
-
Drug metabolism - other enzymes
-
-
dTMP de novo biosynthesis (mitochondrial)
-
-
PWY66-385
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol fermentation
-
-
ethanolamine utilization
-
-
PWY0-1477
Fatty acid degradation
-
-
Fe(II) oxidation
-
-
PWY-6692
Fluorobenzoate degradation
-
-
Folate biosynthesis
-
-
folate polyglutamylation
folate transformations I
-
-
PWY-2201
folate transformations II (plants)
-
-
PWY-3841
folate transformations III (E. coli)
-
-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
Galactose metabolism
-
-
glutamate and glutamine metabolism
-
-
glycine betaine degradation I
-
-
PWY-3661
glycine betaine degradation II (mammalian)
-
-
PWY-3661-1
glycine betaine degradation III
-
-
PWY-8325
glycine biosynthesis I
-
-
GLYSYN-PWY
glycine metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycogen biosynthesis
-
-
glycogen biosynthesis I (from ADP-D-Glucose)
-
-
GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
-
-
PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
-
-
PWY-7900
glycogen metabolism
-
-
Glycolysis / Gluconeogenesis
-
-
Glycosaminoglycan degradation
-
-
Glycosphingolipid biosynthesis - ganglio series
-
-
Glycosphingolipid biosynthesis - lacto and neolacto series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
heme metabolism
-
-
heterolactic fermentation
-
-
P122-PWY
IAA biosynthesis
-
-
incomplete reductive TCA cycle
-
-
P42-PWY
indole glucosinolate activation (herbivore attack)
-
-
PWYQT-4476
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
indole-3-acetate biosynthesis V (bacteria and fungi)
-
-
PWY-5026
isoprene biosynthesis II (engineered)
-
-
PWY-7391
L-arginine biosynthesis I (via L-ornithine)
-
-
ARGSYN-PWY
L-arginine biosynthesis II (acetyl cycle)
-
-
ARGSYNBSUB-PWY
L-arginine biosynthesis III (via N-acetyl-L-citrulline)
-
-
PWY-5154
L-arginine biosynthesis IV (archaea)
-
-
PWY-7400
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
L-arginine degradation XIII (reductive Stickland reaction)
-
-
PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
-
-
PWY-6344
L-asparagine biosynthesis I
-
-
ASPARAGINE-BIOSYNTHESIS
L-asparagine biosynthesis II
-
-
ASPARAGINESYN-PWY
L-asparagine degradation I
-
-
ASPARAGINE-DEG1-PWY
L-asparagine degradation III (mammalian)
-
-
ASPARAGINE-DEG1-PWY-1
L-citrulline biosynthesis
-
-
CITRULBIO-PWY
L-citrulline degradation
-
-
CITRULLINE-DEG-PWY
L-cysteine biosynthesis II (tRNA-dependent)
-
-
PWY-6308
L-isoleucine degradation II
-
-
PWY-5078
L-leucine degradation III
-
-
PWY-5076
L-methionine degradation III
-
-
PWY-5082
L-Ndelta-acetylornithine biosynthesis
-
-
PWY-6922
L-phenylalanine degradation III
-
-
PWY-5079
L-proline degradation I
-
-
PROUT-PWY
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
leucine metabolism
-
-
linezolid resistance
-
-
PWY-6828
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
methionine metabolism
-
-
methylaspartate cycle
methylwyosine biosynthesis
-
-
PWY-7285
mevalonate metabolism
-
-
mevalonate pathway I (eukaryotes and bacteria)
-
-
PWY-922
mevalonate pathway II (haloarchaea)
-
-
PWY-6174
mevalonate pathway III (Thermoplasma)
-
-
PWY-7524
mevalonate pathway IV (archaea)
-
-
PWY-8125
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
molybdenum cofactor biosynthesis
-
-
PWY-8171
Monobactam biosynthesis
-
-
mRNA capping II
-
-
PWY-7379
N-Glycan biosynthesis
-
-
N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis
-
-
PWY0-1587
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
Naphthalene degradation
-
-
Nitrogen metabolism
-
-
noradrenaline and adrenaline degradation
-
-
PWY-6342
One carbon pool by folate
-
-
Other glycan degradation
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
Penicillin and cephalosporin biosynthesis
-
-
Peptidoglycan biosynthesis
-
-
peptidoglycan biosynthesis
-
-
peptidoglycan biosynthesis II (staphylococci)
-
-
PWY-5265
peptidoglycan biosynthesis IV (Enterococcus faecium)
-
-
PWY-6471
peptidoglycan maturation (meso-diaminopimelate containing)
-
-
PWY0-1586
Phenylalanine metabolism
-
-
phenylalanine metabolism
-
-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
phenylethanol biosynthesis
-
-
PWY-5751
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
photorespiration I
-
-
PWY-181
photorespiration II
-
-
PWY-8362
photorespiration III
-
-
PWY-8363
Photosynthesis
-
-
phytol degradation
-
-
PWY66-389
Porphyrin and chlorophyll metabolism
-
-
proline metabolism
-
-
proline to cytochrome bo oxidase electron transfer
-
-
PWY0-1544
propanol degradation
-
-
protein N-glycosylation initial phase (eukaryotic)
-
-
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
pseudouridine degradation
-
-
PWY-6019
Purine metabolism
-
-
purine metabolism
-
-
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
pyrimidine deoxyribonucleosides salvage
-
-
PWY-7199
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
-
-
PWY-6545
pyrimidine deoxyribonucleotides de novo biosynthesis IV
-
-
PWY-7198
Pyrimidine metabolism
-
-
pyrimidine metabolism
-
-
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
queuosine biosynthesis I (de novo)
-
-
PWY-6700
queuosine biosynthesis III (queuosine salvage)
-
-
PWY-8106
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
Retinol metabolism
-
-
salidroside biosynthesis
-
-
PWY-6802
selenate reduction
-
-
PWY-6932
Selenocompound metabolism
-
-
serotonin degradation
-
-
PWY-6313
serotonin metabolism
-
-
Sphingolipid metabolism
-
-
Starch and sucrose metabolism
-
-
starch biosynthesis
-
-
PWY-622
Styrene degradation
-
-
sulfate activation for sulfonation
-
-
PWY-5340
sulfate reduction
-
-
sulfite oxidation III
-
-
PWY-5278
sulfopterin metabolism
-
-
Sulfur metabolism
-
-
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of L-aspartate and L-asparagine biosynthesis
-
-
ASPASN-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
-
-
PWY0-166
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Terpenoid backbone biosynthesis
-
-
tetrapyrrole biosynthesis I (from glutamate)
-
-
PWY-5188
Thiamine metabolism
-
-
threonine metabolism
-
-
trehalose biosynthesis IV
-
-
PWY-2622
tRNA charging
-
-
TRNA-CHARGING-PWY
tRNA methylation (yeast)
-
-
PWY-6829
tRNA processing
-
-
PWY0-1479
tRNA splicing I
-
-
PWY-6689
tRNA splicing II
-
-
PWY-7803
Tryptophan metabolism
-
-
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
UMP biosynthesis I
-
-
PWY-5686
UMP biosynthesis II
-
-
PWY-7790
UMP biosynthesis III
-
-
PWY-7791
urea cycle
valine metabolism
-
-
Various types of N-glycan biosynthesis
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
ModB protein
-
Manually annotated by BRENDA team
-
ModA protein
-
Manually annotated by BRENDA team
LINKS TO OTHER DATABASES (specific for Pyrococcus abyssi)