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Information on Organism Pseudomonas mendocina

Synonyms:
ATCC 25411; CCUG 1781; CFBP 2434; CIP 75.21; culture-collection:VKM:B:972; DSM 50017; IFO 14162; JCM 5966; LMG 1223; LMG:1223; NBRC 14162; NCCB 76043; NCIB 10541; NCIB:10541; NCTC 10897; Pseudomonas mendocina Palleroni 1970; Pseudomonas mendocina; Pseudomonas sp. NaF-B-1; Pseudomonas sp. NaF-C-1; VKM B-972;
Word Map for Organism Pseudomonas mendocina
TaxTree of Organism Pseudomonas mendocina
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Pseudomonadales can be found in Brenda BRENDA pathways(order)
Pseudomonadaceae can be found in Brenda BRENDA pathways(family)
Pseudomonas can be found in Brenda BRENDA pathways(genus)
Pseudomonas aeruginosa group can be found in Brenda (species group)
Pseudomonas mendocina can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-reticuline biosynthesis
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-
1,5-anhydrofructose degradation
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-
PWY-6992
2,4-xylenol degradation to protocatechuate
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-
PWY-7703
2-arachidonoylglycerol biosynthesis
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-
PWY-8052
2-nitrotoluene degradation
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PWY-5641
3-chlorocatechol degradation
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-
4-chlorobenzoate degradation
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PWY-6215
4-coumarate degradation (aerobic)
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PWY-8002
4-hydroxybenzoate biosynthesis I (eukaryotes)
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PWY-5754
4-hydroxybenzoate biosynthesis IV (plants)
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PWY-6431
4-hydroxymandelate degradation
4-methylphenol degradation to protocatechuate
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PWY-7700
4-sulfocatechol degradation
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PWY-6041
5-oxo-L-proline metabolism
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-
PWY-7942
8-amino-7-oxononanoate biosynthesis III
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PWY-6578
adenosine ribonucleotides de novo biosynthesis
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PWY-7219
adipate degradation
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aerobic respiration III (alternative oxidase pathway)
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PWY-4302
aerobic toluene degradation
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-
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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-
alginate degradation
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PWY-6986
alkane biosynthesis I
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-
PWY-7032
alpha-Linolenic acid metabolism
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Amino sugar and nucleotide sugar metabolism
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-
Aminobenzoate degradation
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-
ammonia oxidation II (anaerobic)
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-
P303-PWY
anandamide biosynthesis I
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-
PWY-8051
Arginine and proline metabolism
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-
Arginine biosynthesis
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arginine dependent acid resistance
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-
PWY0-1299
arginine metabolism
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arsenite to oxygen electron transfer (via azurin)
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PWY-7429
Ascorbate and aldarate metabolism
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Atrazine degradation
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bacilysin biosynthesis
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PWY-7626
bacterial bioluminescence
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PWY-7723
benzene degradation II (aerobic)
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PWY-8386
Benzoate degradation
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beta-(1,4)-mannan degradation
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PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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PWY-7586
Betalain biosynthesis
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Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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Biotin metabolism
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bisphenol A degradation
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PWY-7757
bryostatin biosynthesis
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PWY-8047
Butanoate metabolism
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-
Caprolactam degradation
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-
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
catechol degradation to beta-ketoadipate
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CATECHOL-ORTHO-CLEAVAGE-PWY
cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
chlorinated phenols degradation
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PWY-6197
Chloroalkane and chloroalkene degradation
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Chlorocyclohexane and chlorobenzene degradation
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chlorpyrifos degradation
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PWY-8065
cis-geranyl-CoA degradation
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PWY-6672
cuticular wax biosynthesis
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-
PWY-282
cutin biosynthesis
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-
PWY-321
Cutin, suberine and wax biosynthesis
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cyanuric acid degradation II
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PWY-5169
D-galacturonate degradation II
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PWY-6486
D-galacturonate degradation III
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PWY-8391
D-glucuronate degradation II
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PWY-6501
D-glucuronate degradation III
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PWY-8390
d-mannose degradation
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-
D-mannose degradation I
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MANNCAT-PWY
D-mannose degradation II
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PWY3O-1743
degradation of aromatic, nitrogen containing compounds
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degradation of pentoses
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degradation of sugar acids
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denitrification
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diploterol biosynthesis
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PWY-6098
Drug metabolism - other enzymes
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dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
Ether lipid metabolism
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Fatty acid biosynthesis
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fatty acid biosynthesis initiation (mitochondria)
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PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
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PWY-6799
fatty acid biosynthesis initiation (type II)
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PWY-4381
Fatty acid degradation
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Fatty acid elongation
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ferrichrome A biosynthesis
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PWY-7571
firefly bioluminescence
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PWY-7913
Fluorobenzoate degradation
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-
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
Fructose and mannose metabolism
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gallate degradation
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GDP-mannose biosynthesis
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PWY-5659
Geraniol degradation
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-
Glycerolipid metabolism
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Glycerophospholipid metabolism
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Glycolysis / Gluconeogenesis
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Glyoxylate and dicarboxylate metabolism
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gossypol biosynthesis
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PWY-5773
heme degradation III
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PWY-7844
heptadecane biosynthesis
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PWY-6622
heterolactic fermentation
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P122-PWY
hopanoid biosynthesis (bacteria)
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PWY-7072
Inositol phosphate metabolism
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Isoquinoline alkaloid biosynthesis
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justicidin B biosynthesis
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PWY-6824
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-alanine degradation VI (reductive Stickland reaction)
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PWY-8188
L-arginine degradation II (AST pathway)
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AST-PWY
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
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PWY0-823
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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-
ARGDEG-III-PWY
L-arginine degradation V (arginine deiminase pathway)
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ARGDEGRAD-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-dopa and L-dopachrome biosynthesis
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PWY-6481
L-phenylalanine biosynthesis I
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-
PHESYN
L-phenylalanine biosynthesis II
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PWY-3462
L-phenylalanine biosynthesis III (cytosolic, plants)
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PWY-7432
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine biosynthesis II
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PWY-3461
L-tyrosine biosynthesis III
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PWY-6120
lipid metabolism
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mannitol biosynthesis
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PWY-3881
mannitol degradation II
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PWY-3861
matairesinol biosynthesis
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PWY-5466
Metabolic pathways
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Methane metabolism
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methane oxidation to methanol I
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PWY-1641
methanol oxidation to formaldehyde IV
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PWY-5506
methyl indole-3-acetate interconversion
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PWY-6303
methyl parathion degradation
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PWY-5489
methylsalicylate degradation
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PWY18C3-24
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
mupirocin biosynthesis
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PWY-8012
mycobactin biosynthesis
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PWY185E-1
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction IV (dissimilatory)
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PWY-5674
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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nocardicin A biosynthesis
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PWY-7797
non-pathway related
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O-Antigen nucleotide sugar biosynthesis
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octane oxidation
oleate biosynthesis II (animals and fungi)
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PWY-5996
One carbon pool by folate
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ornithine metabolism
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paraoxon degradation
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PWY-5490
parathion degradation
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PARATHION-DEGRADATION-PWY
pederin biosynthesis
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PWY-8049
Penicillin and cephalosporin biosynthesis
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phenol degradation
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phenol degradation I (aerobic)
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PWY-5418
phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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phenylmercury acetate degradation
pheomelanin biosynthesis
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PWY-7917
phosphatidylcholine acyl editing
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PWY-6803
phospholipases
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LIPASYN-PWY
Photosynthesis
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photosynthesis light reactions
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PWY-101
plasmalogen biosynthesis I (aerobic)
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-
PWY-7782
plasmalogen degradation
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PWY-7783
polyamine pathway
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polybrominated dihydroxylated diphenyl ethers biosynthesis
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PWY-7934
Polycyclic aromatic hydrocarbon degradation
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polyhydroxybutanoate biosynthesis
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PWY1-3
polyhydroxydecanoate biosynthesis
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PWY-6657
Porphyrin and chlorophyll metabolism
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protocatechuate degradation II (ortho-cleavage pathway)
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PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY
Purine metabolism
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purine metabolism
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-
putrescine biosynthesis I
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PWY-40
putrescine biosynthesis II
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PWY-43
pyoverdine I biosynthesis
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PWY-6409
pyrimidine deoxyribonucleosides degradation
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-
PWY-7181
pyrimidine deoxyribonucleosides salvage
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PWY-7199
pyrimidine deoxyribonucleotides biosynthesis from CTP
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-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
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-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
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-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis IV
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PWY-7198
Pyrimidine metabolism
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-
pyrimidine metabolism
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-
pyrimidine nucleobases salvage I
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PWY-7183
pyruvate fermentation to (R)-lactate
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PWY-8274
Pyruvate metabolism
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-
reactive oxygen species degradation
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DETOX1-PWY-1
retinol biosynthesis
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-
PWY-6857
salinosporamide A biosynthesis
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-
PWY-6627
sesamin biosynthesis
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-
PWY-5469
Sesquiterpenoid and triterpenoid biosynthesis
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-
spermidine biosynthesis III
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PWY-6834
spongiadioxin C biosynthesis
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PWY-7935
sporopollenin precursors biosynthesis
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PWY-6733
Starch and sucrose metabolism
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-
stearate biosynthesis I (animals)
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-
PWY-5972
stearate biosynthesis III (fungi)
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PWY3O-355
Styrene degradation
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-
suberin monomers biosynthesis
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PWY-1121
superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of methylsalicylate metabolism
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PWY18C3-25
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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PWY0-166
Thiamine metabolism
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Toluene degradation
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toluene degradation II (aerobic) (via 4-methylcatechol)
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-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
toluene degradation to 4-methylphenol
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TOLUENE-DEG-4-OH-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
Tryptophan metabolism
-
-
Tyrosine metabolism
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-
Ubiquinone and other terpenoid-quinone biosynthesis
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-
UMP biosynthesis I
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-
PWY-5686
UMP biosynthesis II
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-
PWY-7790
UMP biosynthesis III
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-
PWY-7791
vancomycin resistance I
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-
PWY-6454
vitamin K-epoxide cycle
Xylene degradation
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Pseudomonas mendocina)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA