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Information on Organism Photobacterium profundum

Synonyms:
CIP 106289; JCM 10084; Photobacterium profundum Nogi et al. 1998; Photobacterium profundum; Photobacterium sp. DSJ4; strain DSJ4;
Word Map for Organism Photobacterium profundum
TaxTree of Organism Photobacterium profundum
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Vibrionales can be found in Brenda BRENDA pathways(order)
Vibrionaceae can be found in Brenda BRENDA pathways(family)
Photobacterium can be found in Brenda BRENDA pathways(genus)
Photobacterium profundum can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
1,2-dichloroethane degradation
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12DICHLORETHDEG-PWY
1,5-anhydrofructose degradation
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PWY-6992
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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Aminobenzoate degradation
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Arachidonic acid metabolism
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arachidonic acid metabolism
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bacterial bioluminescence
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PWY-7723
Biosynthesis of 12-, 14- and 16-membered macrolides
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Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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bryostatin biosynthesis
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PWY-8047
bupropion degradation
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PWY66-241
C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Caffeine metabolism
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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Chloroalkane and chloroalkene degradation
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Chlorocyclohexane and chlorobenzene degradation
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CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
cutin biosynthesis
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PWY-321
cyanate degradation
Cysteine and methionine metabolism
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Drug metabolism - cytochrome P450
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dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
erythromycin D biosynthesis
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PWY-7106
ethene biosynthesis V (engineered)
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PWY-7124
Fatty acid biosynthesis
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fatty acid biosynthesis initiation (mitochondria)
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PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
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PWY-6799
fatty acid biosynthesis initiation (type I)
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PWY-5966-1
fatty acid biosynthesis initiation (type II)
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PWY-4381
Fatty acid degradation
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Fatty acid elongation
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Folate biosynthesis
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folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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PWY-1622
fructan degradation
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PWY-862
Fructose and mannose metabolism
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gamma-hexachlorocyclohexane degradation
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GAMMAHEXCHLORDEG-PWY
gluconeogenesis
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gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
Glycosaminoglycan degradation
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glyoxylate assimilation
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PWY-5744
Linoleic acid metabolism
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lipid metabolism
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macrolide antibiotic biosynthesis
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melatonin degradation I
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PWY-6398
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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Methanobacterium thermoautotrophicum biosynthetic metabolism
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PWY-6146
methionine metabolism
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Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
mupirocin biosynthesis
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PWY-8012
mycobactin biosynthesis
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PWY185E-1
mycolate biosynthesis
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PWYG-321
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
Nitrogen metabolism
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nitrogen remobilization from senescing leaves
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PWY-6549
oleate biosynthesis II (animals and fungi)
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PWY-5996
One carbon pool by folate
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palmitate biosynthesis I (type I fatty acid synthase)
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PWY-5994
partial TCA cycle (obligate autotrophs)
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PWY-5913
pederin biosynthesis
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PWY-8049
photosynthesis
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Pyruvate metabolism
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Retinol metabolism
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sporopollenin precursors biosynthesis
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PWY-6733
stearate biosynthesis I (animals)
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PWY-5972
stearate biosynthesis III (fungi)
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PWY3O-355
Steroid hormone biosynthesis
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suberin monomers biosynthesis
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PWY-1121
superpathway of mycolate biosynthesis
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PWY-6113
tetrahydrofolate biosynthesis I
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PWY-6614
tetrahydrofolate metabolism
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Tryptophan metabolism
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tryptophan metabolism
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vanillin biosynthesis I
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PWY-5665
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LINKS TO OTHER DATABASES (specific for Photobacterium profundum)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA