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Literature summary extracted from

  • Wang, H.; Ma, D.; Yang, J.; Deng, K.; Li, M.; Ji, X.; Zhong, L.; Zhao, H.
    An integrative volatile terpenoid profiling and transcriptomics analysis for gene mining and functional characterization of AvBPPS and AvPS involved in the monoterpenoid biosynthesis in Amomum villosum (2018), Front. Plant Sci., 9, 846 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
4.2.3.119 integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.120 integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.121 integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.122 integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
4.2.3.119 Mg2+ required Wurfbainia villosa
4.2.3.120 Mg2+ required Wurfbainia villosa
4.2.3.121 Mg2+ required Wurfbainia villosa
4.2.3.122 Mg2+ required Wurfbainia villosa

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
4.2.3.119 geranyl diphosphate Wurfbainia villosa
-
 alpha-pinene + diphosphate
-
 ?
4.2.3.120 geranyl diphosphate Wurfbainia villosa
-
 beta-pinene + diphosphate
-
 ?
4.2.3.121 geranyl diphosphate Wurfbainia villosa
-
 alpha-pinene + diphosphate
-
 ?
4.2.3.122 geranyl diphosphate Wurfbainia villosa
-
 beta-pinene + diphosphate
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
4.2.3.119 Wurfbainia villosa A0A2Z4K4P3 i.e. Wurfbainia villosa
-
4.2.3.120 Wurfbainia villosa A0A2Z4K4P3 i.e. Wurfbainia villosa
-
4.2.3.121 Wurfbainia villosa A0A2Z4K4P3 i.e. Wurfbainia villosa
-
4.2.3.122 Wurfbainia villosa A0A2Z4K4P3 i.e. Wurfbainia villosa
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
4.2.3.119 additional information not in leaves and seeds Wurfbainia villosa
-
4.2.3.119 pericarp
-
 Wurfbainia villosa
-
4.2.3.120 fruit
-
 Wurfbainia villosa
-
4.2.3.120 additional information not in leaves and seeds Wurfbainia villosa
-
4.2.3.120 pericarp
-
 Wurfbainia villosa
-
4.2.3.121 fruit
-
 Wurfbainia villosa
-
4.2.3.121 additional information not in leaves and seeds Wurfbainia villosa
-
4.2.3.121 pericarp
-
 Wurfbainia villosa
-
4.2.3.122 fruit
-
 Wurfbainia villosa
-
4.2.3.122 additional information not in leaves and seeds Wurfbainia villosa
-
4.2.3.122 pericarp
-
 Wurfbainia villosa
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
4.2.3.119 geranyl diphosphate
-
 Wurfbainia villosa alpha-pinene + diphosphate
-
 ?
4.2.3.119 geranyl diphosphate stereochemistry of the product is not specified in the publication Wurfbainia villosa alpha-pinene + diphosphate
-
 ?
4.2.3.119 additional information enzyme AvTPS1 (AvPS or pinene synthase) catalyzes GPP to form alpha-pinene and beta-pinene, the enzyme produces 63% beta-pinene as the major product Wurfbainia villosa ?
-
 ?
4.2.3.120 geranyl diphosphate
-
 Wurfbainia villosa beta-pinene + diphosphate
-
 ?
4.2.3.120 geranyl diphosphate stereochemistry of the product is not specified in the publication Wurfbainia villosa beta-pinene + diphosphate
-
 ?
4.2.3.120 additional information enzyme AvTPS1 (AvPS or pinene synthase) catalyzes GPP to form alpha-pinene and beta-pinene, the enzyme produces 63% beta-pinene as the major product Wurfbainia villosa ?
-
 ?
4.2.3.121 geranyl diphosphate
-
 Wurfbainia villosa alpha-pinene + diphosphate
-
 ?
4.2.3.121 additional information enzyme AvTPS1 (AvPS or pinene synthase) catalyzes geranyl diphosphate to form alpha-pinene and beta-pinene, the enzyme produces 63% beta-pinene as the major product Wurfbainia villosa ?
-
 ?
4.2.3.122 geranyl diphosphate
-
 Wurfbainia villosa beta-pinene + diphosphate
-
 ?
4.2.3.122 additional information enzyme AvTPS1 (AvPS or pinene synthase) catalyzes GPP to form alpha-pinene and beta-pinene, the enzyme produces 63% beta-pinene as the major product Wurfbainia villosa ?
-
 ?

Synonyms

EC Number Synonyms Comment Organism
4.2.3.119 AvPS
-
 Wurfbainia villosa
4.2.3.119 AvTPS1
-
 Wurfbainia villosa
4.2.3.119 More cf. EC 4.2.3.120, 4.2.3.121, and 4.2.3.122 Wurfbainia villosa
4.2.3.119 pinene synthase
-
 Wurfbainia villosa
4.2.3.119 TPS1
-
 Wurfbainia villosa
4.2.3.120 AvPS
-
 Wurfbainia villosa
4.2.3.120 AvTPS1
-
 Wurfbainia villosa
4.2.3.120 More cf. EC 4.2.3.119, 4.2.3.121, and 4.2.3.122 Wurfbainia villosa
4.2.3.120 pinene synthase
-
 Wurfbainia villosa
4.2.3.120 TPS1
-
 Wurfbainia villosa
4.2.3.121 AvPS
-
 Wurfbainia villosa
4.2.3.121 AvTPS1
-
 Wurfbainia villosa
4.2.3.121 More cf. EC 4.2.3.120, 4.2.3.119, and 4.2.3.122 Wurfbainia villosa
4.2.3.121 pinene synthase
-
 Wurfbainia villosa
4.2.3.121 TPS1
-
 Wurfbainia villosa
4.2.3.122 AvPS
-
 Wurfbainia villosa
4.2.3.122 AvTPS1
-
 Wurfbainia villosa
4.2.3.122 More cf. EC 4.2.3.120, 4.2.3.121, and 4.2.3.119 Wurfbainia villosa
4.2.3.122 pinene synthase
-
 Wurfbainia villosa
4.2.3.122 TPS1
-
 Wurfbainia villosa

General Information

EC Number General Information Comment Organism
4.2.3.119 evolution the enzyme belongs to the TPS superfamily of enzymes Wurfbainia villosa
4.2.3.119 additional information integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.119 physiological function AvPS (AvTPS1) is not responsible for pinene biosynthesis in the seeds of Amomum villosum, no expression of this gene is detected in the seeds, and the expression of AvPS is not in accordance with the accumulation pattern of pinene in the leaves. But alpha-pinene is widely distributed throughout almost the whole plant, i.e. roots, creeping stems, leaves, pericarp, and seeds. beta-Pinene is found in all the tissues, except seeds. Pinene is a naturally occurring constituent of the essential oils in many plant species that has a relevant role in insect repellency and allelopathy (inhibiting root growth of the tested weed species). Gene AvPS is highly expressed in pericarp, the exterior tissue protecting the fruits against biotic stress, AvPS might be the gene involved in biotic defense in Amonum villosum Wurfbainia villosa
4.2.3.120 evolution the enzyme belongs to the TPS superfamily of enzymes Wurfbainia villosa
4.2.3.120 additional information integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.120 physiological function AvPS (AvTPS1) is not responsible for pinene biosynthesis in the seeds of Amomum villosum, no expression of this gene is detected in the seeds, and the expression of AvPS is not in accordance with the accumulation pattern of pinene in the leaves. But alpha-pinene is widely distributed throughout almost the whole plant, i.e. roots, creeping stems, leaves, pericarp, and seeds. beta-Pinene is found in all the tissues, except seeds. Pinene is a naturally occurring constituent of the essential oils in many plant species that has a relevant role in insect repellency and allelopathy (inhibiting root growth of the tested weed species). Gene AvPS is highly expressed in pericarp, the exterior tissue protecting the fruits against biotic stress, AvPS might be the gene involved in biotic defense in Amonum villosum Wurfbainia villosa
4.2.3.121 evolution the enzyme belongs to the TPS superfamily of enzymes Wurfbainia villosa
4.2.3.121 additional information integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.121 physiological function AvPS (AvTPS1) is not responsible for pinene biosynthesis in the seeds of Amomum villosum, no expression of this gene is detected in the seeds, and the expression of AvPS is not in accordance with the accumulation pattern of pinene in the leaves. But alpha-pinene is widely distributed throughout almost the whole plant, i.e. roots, creeping stems, leaves, pericarp, and seeds. beta-Pinene is found in all the tissues, except seeds. Pinene is a naturally occurring constituent of the essential oils in many plant species that has a relevant role in insect repellency and allelopathy (inhibiting root growth of the tested weed species). Gene AvPS is highly expressed in pericarp, the exterior tissue protecting the fruits against biotic stress, AvPS might be the gene involved in biotic defense in Amonum villosum Wurfbainia villosa
4.2.3.122 evolution the enzyme belongs to the TPS superfamily of enzymes Wurfbainia villosa
4.2.3.122 additional information integrative volatile terpenoid profiling and transcriptomics analysis for mining the corresponding genes involved in volatile terpenoid biosynthesis, overview Wurfbainia villosa
4.2.3.122 physiological function AvPS (AvTPS1) is not responsible for pinene biosynthesis in the seeds of Amomum villosum, no expression of this gene is detected in the seeds, and the expression of AvPS is not in accordance with the accumulation pattern of pinene in the leaves. But alpha-pinene is widely distributed throughout almost the whole plant, i.e. roots, creeping stems, leaves, pericarp, and seeds. beta-Pinene is found in all the tissues, except seeds. Pinene is a naturally occurring constituent of the essential oils in many plant species that has a relevant role in insect repellency and allelopathy (inhibiting root growth of the tested weed species). Gene AvPS is highly expressed in pericarp, the exterior tissue protecting the fruits against biotic stress, AvPS might be the gene involved in biotic defense in Amonum villosum Wurfbainia villosa