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Literature summary extracted from

  • Rangarajan, E.S.; Li, Y.; Iannuzzi, P.; Tocilj, A.; Hung, L.W.; Matte, A.; Cygler, M.
    Crystal structure of a dodecameric FMN-dependent UbiX-like decarboxylase (Pad1) from Escherichia coli O157: H7 (2004), Protein Sci., 13, 3006-3016.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
4.1.1.98 expressed in Escherichia coli BL21(DE3) cells Escherichia coli

Crystallization (Commentary)

EC Number Crystallization (Comment) Organism
4.1.1.98 hanging drop vapor diffusion method, using 15% (w/v) PEG 4000, 0.2 M LiSO4, and 0.1 M Hepes buffer (pH 7.0) Escherichia coli

Molecular Weight [Da]

EC Number Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
4.1.1.98 23175
-
12 * 23175, electron spray ionization mass spectrometry Escherichia coli
4.1.1.98 23183
-
12 * 23183, calculated from amino acid sequence Escherichia coli
4.1.1.98 295000
-
gel filtration Escherichia coli

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
4.1.1.98 a 4-hydroxy-3-polyprenylbenzoate Escherichia coli
-
a 2-polyprenylphenol + CO2
-
?

Organism

EC Number Organism UniProt Comment Textmining
4.1.1.98 Escherichia coli P69772
-
-

Purification (Commentary)

EC Number Purification (Comment) Organism
4.1.1.98 Ni-NTA resin column chromatography and Superose 12 gel filtration Escherichia coli

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
4.1.1.98 3-octaprenyl-4-hydroxybenzoate
-
Escherichia coli 2-octaprenylphenol + CO2
-
?
4.1.1.98 a 4-hydroxy-3-polyprenylbenzoate
-
Escherichia coli a 2-polyprenylphenol + CO2
-
?

Subunits

EC Number Subunits Comment Organism
4.1.1.98 homododecamer 12 * 23175, electron spray ionization mass spectrometry Escherichia coli
4.1.1.98 homododecamer 12 * 23183, calculated from amino acid sequence Escherichia coli

Synonyms

EC Number Synonyms Comment Organism
4.1.1.98 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
-
Escherichia coli
4.1.1.98 PAD1
-
Escherichia coli
4.1.1.98 ubiX
-
Escherichia coli

Cofactor

EC Number Cofactor Comment Organism Structure
4.1.1.98 FMN dependent on Escherichia coli