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Literature summary extracted from
- The family of terpene synthases in plants: A mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom (2011), Plant J., 66, 212-229.
Cloned(Commentary)
| EC Number | Cloned (Comment) | Organism |
|---|---|---|
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Arabidopsis thaliana |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Picea abies |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Abies grandis |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Sorghum bicolor |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Oryza sativa |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Physcomitrium patens |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Vitis vinifera |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Picea glauca |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Populus trichocarpa |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Picea sitchensis |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Selaginella moellendorffii |
| 5.5.1.13 | gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview | Picea engelmannii x Picea glauca |
Localization
| EC Number | Localization | Comment | Organism | GeneOntology No. | Textmining |
|---|---|---|---|---|---|
| 5.5.1.13 | chloroplast | - |
Arabidopsis thaliana | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Picea abies | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Abies grandis | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Sorghum bicolor | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Oryza sativa | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Physcomitrium patens | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Vitis vinifera | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Picea glauca | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Populus trichocarpa | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Picea sitchensis | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Selaginella moellendorffii | 9507 | - |
| 5.5.1.13 | chloroplast | - |
Picea engelmannii x Picea glauca | 9507 | - |
Organism
| EC Number | Organism | UniProt | Comment | Textmining |
|---|---|---|---|---|
| 5.5.1.13 | Abies grandis | - |
- |
- |
| 5.5.1.13 | Arabidopsis thaliana | - |
40 TPS genes | - |
| 5.5.1.13 | Oryza sativa | - |
57 TPS genes | - |
| 5.5.1.13 | Physcomitrium patens | - |
single TPS gene | - |
| 5.5.1.13 | Picea abies | - |
- |
- |
| 5.5.1.13 | Picea engelmannii x Picea glauca | - |
hybrid white spruce | - |
| 5.5.1.13 | Picea glauca | - |
- |
- |
| 5.5.1.13 | Picea sitchensis | - |
- |
- |
| 5.5.1.13 | Populus trichocarpa | - |
68 TPS genes | - |
| 5.5.1.13 | Selaginella moellendorffii | - |
18 TPS genes | - |
| 5.5.1.13 | Sorghum bicolor | - |
48 TPS genes | - |
| 5.5.1.13 | Vitis vinifera | - |
152 TPS genes | - |
Reaction
| EC Number | Reaction | Comment | Organism | Reaction ID |
|---|---|---|---|---|
| 5.5.1.13 | geranylgeranyl diphosphate = ent-copalyl diphosphate | reaction mechanism | Arabidopsis thaliana |
aSynonyms
| EC Number | Synonyms | Comment | Organism |
|---|---|---|---|
| 5.5.1.13 | copalyl synthase/kaurene synthase | - |
Physcomitrium patens |
| 5.5.1.13 | CPS | - |
Arabidopsis thaliana |
| 5.5.1.13 | CPS | - |
Picea abies |
| 5.5.1.13 | CPS | - |
Abies grandis |
| 5.5.1.13 | CPS | - |
Sorghum bicolor |
| 5.5.1.13 | CPS | - |
Oryza sativa |
| 5.5.1.13 | CPS | - |
Physcomitrium patens |
| 5.5.1.13 | CPS | - |
Vitis vinifera |
| 5.5.1.13 | CPS | - |
Picea glauca |
| 5.5.1.13 | CPS | - |
Populus trichocarpa |
| 5.5.1.13 | CPS | - |
Picea sitchensis |
| 5.5.1.13 | CPS | - |
Selaginella moellendorffii |
| 5.5.1.13 | CPS | - |
Picea engelmannii x Picea glauca |
| 5.5.1.13 | CPS/KS | - |
Physcomitrium patens |
General Information
| EC Number | General Information | Comment | Organism |
|---|---|---|---|
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Arabidopsis thaliana |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Picea abies |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Abies grandis |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Sorghum bicolor |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Oryza sativa |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Physcomitrium patens |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Vitis vinifera |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Picea glauca |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Populus trichocarpa |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Picea sitchensis |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Selaginella moellendorffii |
| 5.5.1.13 | evolution | TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview | Picea engelmannii x Picea glauca |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Arabidopsis thaliana |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Picea abies |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Abies grandis |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Sorghum bicolor |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Oryza sativa |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Physcomitrium patens |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Vitis vinifera |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Picea glauca |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Populus trichocarpa |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Picea sitchensis |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Selaginella moellendorffii |
| 5.5.1.13 | physiological function | the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins | Picea engelmannii x Picea glauca |
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