Literature summary extracted from
Sugimoto, K.; Yamamoto, Y.; Antoni, S.; Senda, M.; Kasai, D.; Masai, E.; Fukuda, M.; Senda, T.
Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6 (2009), Acta Crystallogr. Sect. F, F65, 1171-1174.
Cloned(Commentary)
EC Number |
Cloned (Comment) |
Organism |
---|
1.13.11.57 |
expressed in Escherichia coli BL21(DE3) cells |
Sphingobium sp. |
Crystallization (Commentary)
EC Number |
Crystallization (Comment) |
Organism |
---|
1.13.11.57 |
hanging drop vapor diffusion method, using 25% (w/v) PEG 8000, 0.1 M sodium acetate trihydrate, 0.1 M HEPES-NaOH pH 7.8, at 4°C |
Sphingobium sp. |
Molecular Weight [Da]
EC Number |
Molecular Weight [Da] |
Molecular Weight Maximum [Da] |
Comment |
Organism |
---|
1.13.11.57 |
93800 |
- |
calculated from amino acid sequence |
Sphingobium sp. |
Organism
EC Number |
Organism |
UniProt |
Comment |
Textmining |
---|
1.13.11.57 |
Sphingobium sp. |
- |
formerly Sphingomonas paucimobilis strain SYK-6 |
- |
Purification (Commentary)
EC Number |
Purification (Comment) |
Organism |
---|
1.13.11.57 |
POROS PI column chromatography and POROS HQ column chromatography |
Sphingobium sp. |
Substrates and Products (Substrate)
EC Number |
Substrates |
Comment Substrates |
Organism |
Products |
Comment (Products) |
Rev. |
Reac. |
---|
1.13.11.57 |
gallate + O2 |
- |
Sphingobium sp. |
4-oxalomesaconate |
- |
? |
|
Subunits
EC Number |
Subunits |
Comment |
Organism |
---|
1.13.11.57 |
homodimer |
x-ray crystallography |
Sphingobium sp. |
Synonyms
EC Number |
Synonyms |
Comment |
Organism |
---|
1.13.11.57 |
DesB |
- |
Sphingobium sp. |