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Literature summary extracted from

  • Sugimoto, K.; Yamamoto, Y.; Antoni, S.; Senda, M.; Kasai, D.; Masai, E.; Fukuda, M.; Senda, T.
    Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6 (2009), Acta Crystallogr. Sect. F, F65, 1171-1174.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
1.13.11.57 expressed in Escherichia coli BL21(DE3) cells Sphingobium sp.

Crystallization (Commentary)

EC Number Crystallization (Comment) Organism
1.13.11.57 hanging drop vapor diffusion method, using 25% (w/v) PEG 8000, 0.1 M sodium acetate trihydrate, 0.1 M HEPES-NaOH pH 7.8, at 4°C Sphingobium sp.

Molecular Weight [Da]

EC Number Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
1.13.11.57 93800
-
calculated from amino acid sequence Sphingobium sp.

Organism

EC Number Organism UniProt Comment Textmining
1.13.11.57 Sphingobium sp.
-
formerly Sphingomonas paucimobilis strain SYK-6
-

Purification (Commentary)

EC Number Purification (Comment) Organism
1.13.11.57 POROS PI column chromatography and POROS HQ column chromatography Sphingobium sp.

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.13.11.57 gallate + O2
-
Sphingobium sp. 4-oxalomesaconate
-
?

Subunits

EC Number Subunits Comment Organism
1.13.11.57 homodimer x-ray crystallography Sphingobium sp.

Synonyms

EC Number Synonyms Comment Organism
1.13.11.57 DesB
-
Sphingobium sp.