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Literature summary extracted from

  • Kato, N.; Yurimoto, H.; Thauer, R.K.
    The physiological role of the ribulose monophosphate pathway in bacteria and archaea (2006), Biosci. Biotechnol. Biochem., 70, 10-21.
    View publication on PubMed

Cloned(Commentary)

EC Number Cloned (Comment) Organism
4.1.2.43 expressed in Escherichia coli Pyrococcus horikoshii

KM Value [mM]

EC Number KM Value [mM] KM Value Maximum [mM] Substrate Comment Organism Structure
4.1.2.43 0.059
-
 D-ribulose 5-phosphate
-
 Methylomonas aminofaciens
4.1.2.43 0.083
-
 D-ribulose 5-phosphate
-
 Methylococcus capsulatus
4.1.2.43 0.136
-
 D-ribulose 5-phosphate
-
 Methylophilus methylotrophus
4.1.2.43 0.15
-
 formaldehyde
-
 Bacillus sp. (in: Bacteria)
4.1.2.43 0.29
-
 formaldehyde
-
 Methylomonas aminofaciens
4.1.2.43 0.45
-
 D-ribulose 5-phosphate
-
 Bacillus sp. (in: Bacteria)
4.1.2.43 0.49
-
 formaldehyde
-
 Methylococcus capsulatus
4.1.2.43 0.53
-
 formaldehyde
-
 Methylophilus methylotrophus
4.1.2.43 1.1
-
 formaldehyde
-
 Methylomonas sp.
4.1.2.43 1.5
-
 formaldehyde
-
 Mycobacterium gastri
4.1.2.43 1.6
-
 D-ribulose 5-phosphate
-
 Methylomonas sp.

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
4.1.2.43 Mg2+ dependent on Methanosarcina barkeri
4.1.2.43 Mg2+ dependent on Bacillus sp. (in: Bacteria)
4.1.2.43 Mg2+ dependent on Methylophilus methylotrophus
4.1.2.43 Mg2+ dependent on Pyrococcus horikoshii
4.1.2.43 Mg2+ dependent on Methanosarcina mazei
4.1.2.43 Mg2+ dependent on Methylomonas sp.
4.1.2.43 Mg2+ dependent on Mycobacterium gastri
4.1.2.43 Mg2+ dependent on Methylomonas aminofaciens
4.1.2.43 Mg2+ dependent on Methylococcus capsulatus
4.1.2.43 Mn2+ dependent on Methanosarcina barkeri
4.1.2.43 Mn2+ dependent on Bacillus sp. (in: Bacteria)
4.1.2.43 Mn2+ dependent on Methylophilus methylotrophus
4.1.2.43 Mn2+ dependent on Pyrococcus horikoshii
4.1.2.43 Mn2+ dependent on Methanosarcina mazei
4.1.2.43 Mn2+ dependent on Methylomonas sp.
4.1.2.43 Mn2+ dependent on Mycobacterium gastri
4.1.2.43 Mn2+ dependent on Methylomonas aminofaciens
4.1.2.43 Mn2+ dependent on Methylococcus capsulatus

Molecular Weight [Da]

EC Number Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
4.1.2.43 22000
-
 2 * 22000 Methylomonas sp.
4.1.2.43 22500
-
 2 * 22500 Methylophilus methylotrophus
4.1.2.43 23000
-
 2 * 23000 Methylomonas aminofaciens
4.1.2.43 24000
-
 2 * 24000 Mycobacterium gastri
4.1.2.43 27000
-
 2 * 27000 Bacillus sp. (in: Bacteria)
4.1.2.43 32000
-
 holenzyme Bacillus sp. (in: Bacteria)
4.1.2.43 40000
-
 holenzyme Methylophilus methylotrophus
4.1.2.43 43000
-
 holenzyme Mycobacterium gastri
4.1.2.43 44000
-
 holenzyme Methylomonas sp.
4.1.2.43 46000
-
 holoenzyme Methylomonas aminofaciens
4.1.2.43 49000
-
 6 * 49000 Methylococcus capsulatus
4.1.2.43 310000
-
 holoenzyme Methylococcus capsulatus

Organism

EC Number Organism UniProt Comment Textmining
4.1.2.43 Bacillus sp. (in: Bacteria)
-
-
-
4.1.2.43 Bacillus sp. (in: Bacteria) C1
-
-
-
4.1.2.43 Methanosarcina barkeri
-
-
-
4.1.2.43 Methanosarcina mazei
-
-
-
4.1.2.43 Methylococcus capsulatus Q602L4
-
-
4.1.2.43 Methylomonas aminofaciens Q48907
-
-
4.1.2.43 Methylomonas aminofaciens 77a Q48907
-
-
4.1.2.43 Methylomonas sp.
-
-
-
4.1.2.43 Methylomonas sp. M15 / DSM 580
-
-
-
4.1.2.43 Methylophilus methylotrophus
-
-
-
4.1.2.43 Mycobacterium gastri
-
-
-
4.1.2.43 Mycobacterium gastri MB19
-
-
-
4.1.2.43 Pyrococcus horikoshii
-
 strain OT3
-
4.1.2.43 Pyrococcus horikoshii OT-3
-
 strain OT3
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methanosarcina barkeri D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Bacillus sp. (in: Bacteria) D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methylophilus methylotrophus D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Pyrococcus horikoshii D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methanosarcina mazei D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methylomonas sp. D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Mycobacterium gastri D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methylomonas aminofaciens D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methylococcus capsulatus D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Mycobacterium gastri MB19 D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methylomonas sp. M15 / DSM 580 D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Bacillus sp. (in: Bacteria) C1 D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Pyrococcus horikoshii OT-3 D-arabino-hex-3-ulose 6-phosphate
-
 ?
4.1.2.43 D-ribulose 5-phosphate + formaldehyde
-
 Methylomonas aminofaciens 77a D-arabino-hex-3-ulose 6-phosphate
-
 ?

Subunits

EC Number Subunits Comment Organism
4.1.2.43 homodimer
-
 Methanosarcina barkeri
4.1.2.43 homodimer
-
 Pyrococcus horikoshii
4.1.2.43 homodimer
-
 Methanosarcina mazei
4.1.2.43 homodimer 2 * 22000 Methylomonas sp.
4.1.2.43 homodimer 2 * 27000 Bacillus sp. (in: Bacteria)
4.1.2.43 homodimer 2 * 23000 Methylomonas aminofaciens
4.1.2.43 homodimer 2 * 22500 Methylophilus methylotrophus
4.1.2.43 homodimer 2 * 24000 Mycobacterium gastri
4.1.2.43 homohexamer 6 * 49000 Methylococcus capsulatus

Synonyms

EC Number Synonyms Comment Organism
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Methanosarcina barkeri
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Bacillus sp. (in: Bacteria)
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Methylophilus methylotrophus
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Methanosarcina mazei
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Methylomonas sp.
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Mycobacterium gastri
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Methylomonas aminofaciens
4.1.2.43 3-hexulose-6-phosphate synthase
-
 Methylococcus capsulatus
4.1.2.43 3-hexulose-6-phosphate synthase 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Pyrococcus horikoshii
4.1.2.43 HPS
-
 Pyrococcus horikoshii
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Methanosarcina barkeri
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Bacillus sp. (in: Bacteria)
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Methylophilus methylotrophus
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Methanosarcina mazei
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Methylomonas sp.
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Mycobacterium gastri
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Methylomonas aminofaciens
4.1.2.43 HPS 3-hexulose-6-phosphate synthase and 6-phospho-3-hexuloisomerase activities are expressed constitutively in archea Methylococcus capsulatus

Temperature Stability [°C]

EC Number Temperature Stability Minimum [°C] Temperature Stability Maximum [°C] Comment Organism
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Methanosarcina barkeri
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Bacillus sp. (in: Bacteria)
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Methylophilus methylotrophus
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Pyrococcus horikoshii
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Methanosarcina mazei
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Methylomonas sp.
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Mycobacterium gastri
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Methylomonas aminofaciens
4.1.2.43 90
-
 the recombinant enzyme is stable at 90°C Methylococcus capsulatus