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Literature summary extracted from

  • Rigden, D.J.
    Archaea recruited D-Tyr-tRNATyr deacylase for editing in Thr-tRNA synthetase (2004), RNA, 10, 1845-1851.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
6.1.1.3 DNA and amino avid sequence analysis Methanosarcina mazei

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
3.1.1.96 D-aminoacyl-tRNA + H2O Escherichia coli
-
 D-amino acid + tRNA
-
 ?
3.1.1.96 D-aminoacyl-tRNA + H2O Azotobacter vinelandii
-
 D-amino acid + tRNA
-
 ?
3.1.1.96 D-aminoacyl-tRNA + H2O Haemophilus influenzae
-
 D-amino acid + tRNA
-
 ?
6.1.1.3 ATP + L-threonine + tRNAThr Methanosarcina mazei
-
 AMP + diphosphate + L-threonyl-tRNAThr
-
 r
6.1.1.3 additional information Methanosarcina mazei structure-based evolutionary considerations ?
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
3.1.1.96 Azotobacter vinelandii
-
-
-
3.1.1.96 Escherichia coli
-
-
-
3.1.1.96 Haemophilus influenzae P44814
-
-
6.1.1.3 Methanosarcina mazei
-
-
-

Reaction

EC Number Reaction Comment Organism Reaction ID
6.1.1.3 ATP + L-threonine + tRNAThr = AMP + diphosphate + L-threonyl-tRNAThr determination of substrate binding sites, catalytic sites, and catalytic mechanism from structure modeling Methanosarcina mazei
a

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
3.1.1.96 D-aminoacyl-tRNA + H2O
-
 Escherichia coli D-amino acid + tRNA
-
 ?
3.1.1.96 D-aminoacyl-tRNA + H2O
-
 Azotobacter vinelandii D-amino acid + tRNA
-
 ?
3.1.1.96 D-aminoacyl-tRNA + H2O
-
 Haemophilus influenzae D-amino acid + tRNA
-
 ?
6.1.1.3 ATP + L-threonine + tRNAThr
-
 Methanosarcina mazei AMP + diphosphate + L-threonyl-tRNAThr
-
 r
6.1.1.3 ATP + L-threonine + tRNAThr determination of substrate binding sites, catalytic sites, and catalytic mechanism Methanosarcina mazei AMP + diphosphate + L-threonyl-tRNAThr
-
 r
6.1.1.3 additional information structure-based evolutionary considerations Methanosarcina mazei ?
-
 ?

Subunits

EC Number Subunits Comment Organism
3.1.1.96 dimer
-
 Escherichia coli
3.1.1.96 dimer
-
 Azotobacter vinelandii
3.1.1.96 dimer
-
 Haemophilus influenzae
6.1.1.3 More three-dimensional structure modeling of the N-terminal domain by fold recognition and sequence analysis, determination of substrate binding site and catalytic site Methanosarcina mazei

Synonyms

EC Number Synonyms Comment Organism
3.1.1.96 D-Tyr-tRNATyr deacylase
-
 Escherichia coli
3.1.1.96 D-Tyr-tRNATyr deacylase
-
 Azotobacter vinelandii
3.1.1.96 D-Tyr-tRNATyr deacylase
-
 Haemophilus influenzae
3.1.1.96 DTD
-
 Escherichia coli
3.1.1.96 DTD
-
 Azotobacter vinelandii
3.1.1.96 DTD
-
 Haemophilus influenzae
6.1.1.3 Thr-tRNA synthetase
-
 Methanosarcina mazei
6.1.1.3 ThrRS
-
 Methanosarcina mazei

Cofactor

EC Number Cofactor Comment Organism Structure
6.1.1.3 AMP
-
 Methanosarcina mazei
6.1.1.3 ATP
-
 Methanosarcina mazei