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Literature summary extracted from

  • Bystrykh, L.V.; De Koning, W.; Harder, W.
    Dihydroxyacetone synthase from Candida boidinii KD1 (1990), Methods Enzymol., 188, 435-445.
    View publication on PubMed

General Stability

EC Number General Stability Organism
2.2.1.3 dodecanethiol stabilizes most effectively [Candida] boidinii
2.2.1.3 dodecanethiol stabilizes most effectively Ogataea angusta
2.2.1.3 Mg2+ or EDTA stablizes [Candida] boidinii
2.2.1.3 Mg2+ or EDTA stablizes Ogataea angusta

Inhibitors

EC Number Inhibitors Comment Organism Structure
2.2.1.3 Co2+ 0.1 mM [Candida] boidinii
2.2.1.3 Co2+ 0.1 mM Ogataea angusta
2.2.1.3 formaldehyde
-
[Candida] boidinii
2.2.1.3 GSH
-
[Candida] boidinii
2.2.1.3 Mn2+ 0.1 mM [Candida] boidinii
2.2.1.3 Mn2+ 0.1 mM Ogataea angusta
2.2.1.3 NEM
-
[Candida] boidinii
2.2.1.3 Zn2+ 0.1 mM [Candida] boidinii
2.2.1.3 Zn2+ 0.1 mM Ogataea angusta

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
2.2.1.3 peroxisome
-
[Candida] boidinii 5777
-
2.2.1.3 peroxisome
-
Ogataea angusta 5777
-

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
2.2.1.3 Mg2+ activation [Candida] boidinii
2.2.1.3 additional information
-
Ogataea angusta
2.2.1.3 additional information no activation by Ca2+ [Candida] boidinii
2.2.1.3 additional information no metal cations [Candida] boidinii

Molecular Weight [Da]

EC Number Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
2.2.1.3 76000
-
alpha2, 2 * 76000, SDS-PAGE [Candida] boidinii
2.2.1.3 145000
-
gel filtration [Candida] boidinii
2.2.1.3 145000
-
PAGE [Candida] boidinii

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
2.2.1.3 D-xylulose 5-phosphate + formaldehyde [Candida] boidinii first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde Ogataea angusta first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde [Candida] boidinii KD1 first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde Ogataea angusta DL-1 first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?

Organism

EC Number Organism UniProt Comment Textmining
2.2.1.3 Ogataea angusta
-
methanol-grown
-
2.2.1.3 Ogataea angusta DL-1
-
methanol-grown
-
2.2.1.3 [Candida] boidinii
-
-
-
2.2.1.3 [Candida] boidinii
-
methanol grown
-
2.2.1.3 [Candida] boidinii KD1
-
-
-

Purification (Commentary)

EC Number Purification (Comment) Organism
2.2.1.3
-
[Candida] boidinii
2.2.1.3
-
Ogataea angusta

Specific Activity [micromol/min/mg]

EC Number Specific Activity Minimum [µmol/min/mg] Specific Activity Maximum [µmol/min/mg] Comment Organism
2.2.1.3 4.1
-
-
[Candida] boidinii

Storage Stability

EC Number Storage Stability Organism
2.2.1.3 4°C, at least 2-3 weeks under 1 ml dodecanethiol [Candida] boidinii
2.2.1.3 4°C, at least 2-3 weeks under 1 ml dodecanethiol Ogataea angusta
2.2.1.3 4°C, inactivation within a few h in the absence of dodecanethiol [Candida] boidinii
2.2.1.3 4°C, inactivation within a few h in the absence of dodecanethiol Ogataea angusta

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
2.2.1.3 D-xylulose 5-phosphate + D-glyceraldehyde
-
[Candida] boidinii glyceraldehyde 3-phosphate + D-xylulose
-
?
2.2.1.3 D-xylulose 5-phosphate + D-glyceraldehyde
-
[Candida] boidinii KD1 glyceraldehyde 3-phosphate + D-xylulose
-
?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde
-
[Candida] boidinii glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde
-
Ogataea angusta glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle [Candida] boidinii glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle Ogataea angusta glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde
-
[Candida] boidinii KD1 glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle [Candida] boidinii KD1 glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde
-
Ogataea angusta DL-1 glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + formaldehyde first step in formaldehyde assimilation via xylulose monophosphate (dihydroxyacetone) cycle Ogataea angusta DL-1 glyceraldehyde 3-phosphate + dihydroxyacetone i.e. 1,3-dihydroxy-2-propanone ?
2.2.1.3 D-xylulose 5-phosphate + glycolaldehyde
-
[Candida] boidinii glyceraldehyde 3-phosphate + 1,3,5-trihydroxypentane-2-one
-
?
2.2.1.3 D-xylulose 5-phosphate + glycolaldehyde
-
[Candida] boidinii KD1 glyceraldehyde 3-phosphate + 1,3,5-trihydroxypentane-2-one
-
?
2.2.1.3 D-xylulose 5-phosphate + ribose 5-phosphate
-
[Candida] boidinii glyceraldehyde 3-phosphate + sedoheptulose 7-phosphate
-
?
2.2.1.3 D-xylulose 5-phosphate + ribose 5-phosphate
-
[Candida] boidinii KD1 glyceraldehyde 3-phosphate + sedoheptulose 7-phosphate
-
?
2.2.1.3 fructose 6-phosphate + formaldehyde
-
[Candida] boidinii dihydroxyacetone + erythrose 4-phosphate
-
?
2.2.1.3 fructose 6-phosphate + formaldehyde
-
Ogataea angusta dihydroxyacetone + erythrose 4-phosphate
-
?
2.2.1.3 fructose 6-phosphate + formaldehyde
-
Ogataea angusta DL-1 dihydroxyacetone + erythrose 4-phosphate
-
?
2.2.1.3 hydroxypyruvate + formaldehyde
-
[Candida] boidinii CO2 + dihydroxyacetone
-
?
2.2.1.3 sedoheptulose 7-phosphate + formaldehyde
-
[Candida] boidinii dihydroxyacetone + ribose
-
?

Subunits

EC Number Subunits Comment Organism
2.2.1.3 dimer alpha2, 2 * 76000, SDS-PAGE [Candida] boidinii

pH Optimum

EC Number pH Optimum Minimum pH Optimum Maximum Comment Organism
2.2.1.3 additional information
-
pI: 7.1 [Candida] boidinii
2.2.1.3 6.8 7.1
-
[Candida] boidinii

Cofactor

EC Number Cofactor Comment Organism Structure
2.2.1.3 thiamine diphosphate tightly bound [Candida] boidinii