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Literature summary extracted from

  • Frankenberg, N.; Mukougawa, K.; Kohchi, T.; Lagarias, J.C.
    Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms (2001), Plant Cell, 13, 965-978.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
1.3.7.2 expressed in Escherichia coli Synechococcus sp.
1.3.7.2 expressed in Escherichia coli Prochlorococcus sp.
1.3.7.2 expressed in Escherichia coli Nostoc punctiforme
1.3.7.3
-
 Synechococcus sp.
1.3.7.3
-
 Prochlorococcus sp.
1.3.7.3
-
 Nostoc punctiforme
1.3.7.4
-
 Arabidopsis thaliana
1.3.7.5
-
 Synechococcus sp.
1.3.7.5
-
 Anabaena sp.
1.3.7.5
-
 Prochlorococcus sp.
1.3.7.5
-
 Synechocystis sp.
1.3.7.5
-
 Nostoc punctiforme

Molecular Weight [Da]

EC Number Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
1.3.7.2 28000
-
 SDS-PAGE Synechococcus sp.
1.3.7.3 30300
-
 SDS-PAGE Synechococcus sp.
1.3.7.4 33400
-
 SDS-PAGE Arabidopsis thaliana
1.3.7.5 28700
-
 SDS-PAGE Anabaena sp.
1.3.7.5 28900
-
 SDS-PAGE Synechocystis sp.

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin Synechococcus sp. biosynthesis of bilin pigments, functions with EC1.3.7.3. as a dual enzyme complex in the conversion of biliverdin IXa into phycoerythrobilin biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin Synechococcus sp. WH8102 biosynthesis of bilin pigments, functions with EC1.3.7.3. as a dual enzyme complex in the conversion of biliverdin IXa into phycoerythrobilin biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin Nostoc punctiforme
-
 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin Synechococcus sp. biosynthesis of bilin pigments, functions with EC1.3.7.2. as a dual enzyme complex in the conversion of biliverdin Ixa into phycoerythrobilin 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin Synechococcus sp. WH8102 biosynthesis of bilin pigments, functions with EC1.3.7.2. as a dual enzyme complex in the conversion of biliverdin Ixa into phycoerythrobilin 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.4 (3Z)-phytochromobilin + oxidized ferredoxin Arabidopsis thaliana biosynthesis of bilin pigments biliverdin IXa + reduced ferredoxin
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
1.3.7.2 Nostoc punctiforme Q93TL6
-
-
1.3.7.2 Prochlorococcus sp.
-
 strain SS120, strain MED4
-
1.3.7.2 Synechococcus sp.
-
 strain WH8020, strain WH8102
-
1.3.7.3 Nostoc punctiforme Q93TM8
-
-
1.3.7.3 Prochlorococcus sp.
-
 strain SS120, strain MED4
-
1.3.7.3 Synechococcus sp.
-
 strain WH8020, strain WH8102
-
1.3.7.4 Arabidopsis thaliana Q9SR43
-
-
1.3.7.5 Anabaena sp.
-
 cyanobacterium, strain PCC7120
-
1.3.7.5 Nostoc punctiforme Q93TM9
-
-
1.3.7.5 Prochlorococcus sp.
-
-
-
1.3.7.5 Prochlorococcus sp. CCMP1378 / MED4
-
-
-
1.3.7.5 Synechococcus sp.
-
-
-
1.3.7.5 Synechococcus sp. WH8102
-
-
-
1.3.7.5 Synechocystis sp. Q55891 cyanobacterium, strain PCC6803
-

Purification (Commentary)

EC Number Purification (Comment) Organism
1.3.7.2
-
 Synechococcus sp.
1.3.7.2
-
 Prochlorococcus sp.
1.3.7.2
-
 Nostoc punctiforme
1.3.7.3
-
 Synechococcus sp.
1.3.7.3
-
 Prochlorococcus sp.
1.3.7.3
-
 Nostoc punctiforme
1.3.7.4
-
 Arabidopsis thaliana
1.3.7.5
-
 Synechococcus sp.
1.3.7.5
-
 Anabaena sp.
1.3.7.5
-
 Prochlorococcus sp.
1.3.7.5
-
 Synechocystis sp.
1.3.7.5
-
 Nostoc punctiforme

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin
-
 Synechococcus sp. biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin
-
 Nostoc punctiforme biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin biosynthesis of bilin pigments, functions with EC1.3.7.3. as a dual enzyme complex in the conversion of biliverdin IXa into phycoerythrobilin Synechococcus sp. biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin
-
 Synechococcus sp. WH8102 biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.2 15,16-dihydrobiliverdin + oxidized ferredoxin biosynthesis of bilin pigments, functions with EC1.3.7.3. as a dual enzyme complex in the conversion of biliverdin IXa into phycoerythrobilin Synechococcus sp. WH8102 biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin
-
 Nostoc punctiforme 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin 3E-isomer occurs by non-enzyme-mediated side reaction caused by heat and reduced gluthathione Synechococcus sp. 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin 3E-isomer occurs by non-enzyme-mediated side reaction caused by heat and reduced gluthathione Nostoc punctiforme 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin biosynthesis of bilin pigments, functions with EC1.3.7.2. as a dual enzyme complex in the conversion of biliverdin Ixa into phycoerythrobilin Synechococcus sp. 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin 3E-isomer occurs by non-enzyme-mediated side reaction caused by heat and reduced gluthathione Synechococcus sp. WH8102 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.3 (3Z)-phycoerythrobilin + oxidized ferredoxin biosynthesis of bilin pigments, functions with EC1.3.7.2. as a dual enzyme complex in the conversion of biliverdin Ixa into phycoerythrobilin Synechococcus sp. WH8102 15,16-dihydrobiliverdin + reduced ferredoxin
-
 ?
1.3.7.4 (3Z)-phytochromobilin + oxidized ferredoxin
-
 Arabidopsis thaliana biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.4 (3Z)-phytochromobilin + oxidized ferredoxin biosynthesis of bilin pigments Arabidopsis thaliana biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Synechococcus sp. biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Anabaena sp. biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Prochlorococcus sp. biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Synechocystis sp. biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Nostoc punctiforme biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Prochlorococcus sp. CCMP1378 / MED4 biliverdin IXa + reduced ferredoxin
-
 ?
1.3.7.5 (3Z)-phycocyanobilin + oxidized ferredoxin
-
 Synechococcus sp. WH8102 biliverdin IXa + reduced ferredoxin
-
 ?

Cofactor

EC Number Cofactor Comment Organism Structure
1.3.7.2 Ferredoxin
-
 Synechococcus sp.
1.3.7.2 NADPH reaction depends on NADPH regenerating system Synechococcus sp.
1.3.7.3 Ferredoxin
-
 Synechococcus sp.
1.3.7.3 NADPH reaction depends on NADPH regenerating system Synechococcus sp.