BRENDA - Enzyme Database
show all sequences of 6.2.1.25

Purification and properties of benzoate-coenzyme A ligase, a Rhodopseudomonas palustris enzyme involved in the anaeriobic degradation of benzoate

Geissler, J.F.; Harwood, C.S.; Gibson, J.; J. Bacteriol. 170, 1709-1714 (1988)

Data extracted from this reference:

Inhibitors
Inhibitors
Commentary
Organism
Structure
benzoyl-CoA
product inhibition
Rhodopseudomonas palustris
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
0.0006
0.002
benzoate
-
Rhodopseudomonas palustris
0.002
0.003
ATP
-
Rhodopseudomonas palustris
0.09
0.12
reduced CoA
-
Rhodopseudomonas palustris
Metals/Ions
Metals/Ions
Commentary
Organism
Structure
Mg2+
required
Rhodopseudomonas palustris
Mn2+
can replace Mg2+
Rhodopseudomonas palustris
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
58000
-
HPLC gel filtration
Rhodopseudomonas palustris
60000
-
1 * 60000, SDS-PAGE
Rhodopseudomonas palustris
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ID
ATP + benzoate + CoA
Rhodopseudomonas palustris
enzyme is involved in anaerobic degradation of benzoate
?
-
-
-
Organism
Organism
UniProt
Commentary
Textmining
Rhodopseudomonas palustris
-
-
-
Oxidation Stability
Oxidation Stability
Organism
purified enzyme is insensitive to oxygen
Rhodopseudomonas palustris
Purification (Commentary)
Purification (Commentary)
Organism
-
Rhodopseudomonas palustris
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
25
-
-
Rhodopseudomonas palustris
Storage Stability
Storage Stability
Organism
0°C, 1 mg/ml purified enzyme, half-life is 8 days
Rhodopseudomonas palustris
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
Substrate Product ID
ATP + 2-chlorobenzoate + CoA
10% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + 2-chlorobenzoyl-CoA
-
-
-
-
ATP + 2-fluorobenzoate + CoA
102% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + 2-fluorobenzoyl-CoA
-
-
-
-
ATP + 4-fluorobenzoate + CoA
72% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + 4-fluorobenzoyl-CoA
-
-
-
-
ATP + benzoate + CoA
-
707
Rhodopseudomonas palustris
AMP + diphosphate + benzoyl-CoA
-
707
Rhodopseudomonas palustris
-
ATP + benzoate + CoA
enzyme is involved in anaerobic degradation of benzoate
707
Rhodopseudomonas palustris
?
-
-
-
-
ATP + DELTA1-cyclohexenecarboxylate + CoA
13% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + DELTA1-cyclohexenecarboxyl-CoA
-
-
-
-
ATP + DELTA3-cyclohexenecarboxylate + CoA
54% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + DELTA3-cyclohexenecarboxyl-CoA
-
-
-
-
ATP + nicotinate + CoA
12% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + nicotinyl-CoA
-
-
-
-
ATP + picolinate + CoA
45% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + picolinyl-CoA
-
-
-
-
additional information
no reaction with GTP
707
Rhodopseudomonas palustris
?
-
-
-
-
Subunits
Subunits
Commentary
Organism
monomer
1 * 60000, SDS-PAGE
Rhodopseudomonas palustris
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
8.4
8.9
-
Rhodopseudomonas palustris
pH Range
pH Minimum
pH Maximum
Commentary
Organism
7
8.9
7.0: 10% of maximal activity, 8.0: 75% of maximal activity, 8.4-8.9: maximal activity
Rhodopseudomonas palustris
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
benzoyl-CoA
product inhibition
Rhodopseudomonas palustris
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
0.0006
0.002
benzoate
-
Rhodopseudomonas palustris
0.002
0.003
ATP
-
Rhodopseudomonas palustris
0.09
0.12
reduced CoA
-
Rhodopseudomonas palustris
Metals/Ions (protein specific)
Metals/Ions
Commentary
Organism
Structure
Mg2+
required
Rhodopseudomonas palustris
Mn2+
can replace Mg2+
Rhodopseudomonas palustris
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
58000
-
HPLC gel filtration
Rhodopseudomonas palustris
60000
-
1 * 60000, SDS-PAGE
Rhodopseudomonas palustris
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ID
ATP + benzoate + CoA
Rhodopseudomonas palustris
enzyme is involved in anaerobic degradation of benzoate
?
-
-
-
Oxidation Stability (protein specific)
Oxidation Stability
Organism
purified enzyme is insensitive to oxygen
Rhodopseudomonas palustris
Purification (Commentary) (protein specific)
Commentary
Organism
-
Rhodopseudomonas palustris
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
25
-
-
Rhodopseudomonas palustris
Storage Stability (protein specific)
Storage Stability
Organism
0°C, 1 mg/ml purified enzyme, half-life is 8 days
Rhodopseudomonas palustris
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ID
ATP + 2-chlorobenzoate + CoA
10% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + 2-chlorobenzoyl-CoA
-
-
-
-
ATP + 2-fluorobenzoate + CoA
102% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + 2-fluorobenzoyl-CoA
-
-
-
-
ATP + 4-fluorobenzoate + CoA
72% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + 4-fluorobenzoyl-CoA
-
-
-
-
ATP + benzoate + CoA
-
707
Rhodopseudomonas palustris
AMP + diphosphate + benzoyl-CoA
-
707
Rhodopseudomonas palustris
-
ATP + benzoate + CoA
enzyme is involved in anaerobic degradation of benzoate
707
Rhodopseudomonas palustris
?
-
-
-
-
ATP + DELTA1-cyclohexenecarboxylate + CoA
13% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + DELTA1-cyclohexenecarboxyl-CoA
-
-
-
-
ATP + DELTA3-cyclohexenecarboxylate + CoA
54% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + DELTA3-cyclohexenecarboxyl-CoA
-
-
-
-
ATP + nicotinate + CoA
12% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + nicotinyl-CoA
-
-
-
-
ATP + picolinate + CoA
45% of the activity relative to benzoate
707
Rhodopseudomonas palustris
AMP + diphosphate + picolinyl-CoA
-
-
-
-
additional information
no reaction with GTP
707
Rhodopseudomonas palustris
?
-
-
-
-
Subunits (protein specific)
Subunits
Commentary
Organism
monomer
1 * 60000, SDS-PAGE
Rhodopseudomonas palustris
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
8.4
8.9
-
Rhodopseudomonas palustris
pH Range (protein specific)
pH Minimum
pH Maximum
Commentary
Organism
7
8.9
7.0: 10% of maximal activity, 8.0: 75% of maximal activity, 8.4-8.9: maximal activity
Rhodopseudomonas palustris
Other publictions for EC 6.2.1.25
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Synonyms
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
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1
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1
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744980
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Promiscuous defluorinating en ...
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-
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1
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2
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1
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2
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5
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1
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1
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2
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1
1
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744341
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Rhodopseudomonas palustris
Biochemistry
54
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1
1
6
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25
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1
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1
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3
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1
1
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26
1
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1
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24
1
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6
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25
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26
1
1
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24
1
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2
2
-
24
24
705795
Crosby
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Rhodopseudomonas palustris
Mol. Microbiol.
76
874-888
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713869
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Functional analysis of genes f ...
Xanthomonas albilineans, Xanthomonas albilineans LS155
Appl. Microbiol. Biotechnol.
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-
1
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1
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4
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2
2
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714844
Abu Laban
Identification of enzymes invo ...
Geobacter metallireducens, Geobacter metallireducens GS-15 / ATCC 53774 / DSM 7210
Environ. Microbiol.
12
2783-2796
2010
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1
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2
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7
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2
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1
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1
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1
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2
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1
1
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675454
Bains
Biochemical and structural cha ...
Paraburkholderia xenovorans
J. Mol. Biol.
373
965-977
2007
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1
1
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4
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2
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1
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8
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2
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1
1
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4
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1
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8
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673729
Kawaguchi
Purification and characterizat ...
Magnetospirillum sp., Magnetospirillum sp. TS-6
FEMS Microbiol. Lett.
257
208-213
2006
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3
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3
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4
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1
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2
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14
1
1
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1
1
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1
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1
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3
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1
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2
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14
1
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1
1
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662906
Wischgoll
Gene clusters involved in anae ...
Geobacter metallireducens
Mol. Microbiol.
58
1238-1252
2005
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-
1
-
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-
1
1
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1
1
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3
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1
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1
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9
1
1
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1
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1
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1
1
1
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1
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1
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1
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9
1
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661478
Garcia-Bernardo
Engineered biosynthesis of phe ...
Streptomyces maritimus
ChemBioChem
5
1129-1131
2004
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1
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662016
Lopez Barragan
The bzd gene cluster, coding f ...
Azoarcus sp.
J. Bacteriol.
186
5762-5774
2004
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1
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1
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5
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13
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1
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13
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651721
Schuhle
Benzoate-coenzyme A ligase fro ...
Thauera aromatica
J. Bacteriol.
185
4920-4929
2003
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1
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4
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1
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2
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1
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1
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12
1
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1
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4
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1
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1
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12
1
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649313
Beuerle
Enzymatic synthesis and purifi ...
Nicotiana tabacum
Anal. Biochem.
302
305-312
2002
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1
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3
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1
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649526
Beuerle
Purification and characterizat ...
Clarkia breweri
ARCH. BIOCHEM. BIOPHYS.
400
258-264
2002
-
-
-
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1
3
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3
2
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1
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1
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1
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9
1
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1
1
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1
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3
-
3
2
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1
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1
-
9
1
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1
1
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288483
Elshahed
Metabolism of benzoate, cycloh ...
Syntrophus aciditrophicus
Appl. environ. microbiol.
67
1728-1738
2001
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5
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651677
Mohamed
Reinvestigation of a new type ...
Aromatoleum evansii
J. Bacteriol.
183
1899-1908
2001
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5
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654018
Gregus
Effect of chlorophenoxyacetic ...
Rattus norvegicus
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547-559
1999
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2
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2
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2
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-
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718
Schneider
Anaerobic metabolism of L-phen ...
Thauera aromatica
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310-320
1997
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1
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1
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-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
719
Bonting
Anaerobic metabolism of 2-hydr ...
Pseudomonas sp.
Arch. Microbiol.
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402-408
1996
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1
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1
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-
-
1
-
-
-
-
-
-
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-
-
-
-
-
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-
712
Egland
-
Benzoate-coenzyme A ligase, en ...
Rhodopseudomonas palustris
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177
6546-6551
1995
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-
1
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1
-
1
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2
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1
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-
1
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-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
714
Villemur
Coenzyme A ligases involved in ...
Anaerobic bacterium, Aromatoleum evansii, Rhodopseudomonas palustris, Thauera aromatica
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41
855-861
1995
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1
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4
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5
-
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-
1
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-
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-
5
-
-
-
-
-
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-
-
-
-
-
-
-
-
-
717
Bonting
-
Anaerobic degradation of m-cre ...
Pseudomonas sp.
Arch. Microbiol.
164
63-69
1995
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1
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1
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-
-
1
-
-
-
-
-
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-
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-
-
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-
-
715
Altenschmidt
New aerobic benzoate oxidation ...
Pseudomonas sp., Pseudomonas sp. KB740
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175
4851-4858
1993
-
-
-
-
-
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8
-
-
4
-
-
12
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1
-
-
-
1
-
10
1
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-
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-
1
2
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-
-
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-
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-
-
-
-
-
-
-
-
-
-
8
-
-
4
-
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-
1
-
-
1
-
10
1
-
-
-
1
2
-
-
-
-
-
-
-
-
-
711
Auburger
Purification and chracterizati ...
Anaerobic bacterium
Appl. Microbiol. Biotechnol.
37
789-795
1992
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-
-
-
-
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6
3
-
2
1
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3
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1
-
-
-
1
-
7
1
-
1
1
-
-
1
1
-
-
-
-
-
-
-
-
-
-
-
-
-
6
-
3
-
2
1
-
-
-
-
1
-
-
1
-
7
1
1
1
-
-
1
1
-
-
-
-
-
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-
713
Altenschmidt
Purification and characterizat ...
Pseudomonas sp., Pseudomonas sp. KB740
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173
5494-5501
1991
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-
-
-
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7
4
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2
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12
-
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1
-
-
-
1
-
10
-
-
-
-
-
1
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
7
-
4
-
2
-
-
-
-
-
1
-
-
1
-
10
-
-
-
-
1
1
-
-
-
-
-
-
-
-
-
716
Heising
Anaerobic degradation of 3-hyd ...
Bacteria
FEMS Microbiol. Lett.
84
267-272
1991
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6
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1
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-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
710
Gibson
-
Benzoate-CoA ligase from Rhodo ...
Rhodopseudomonas palustris
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188
154-159
1990
-
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-
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2
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2
1
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1
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1
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1
1
7
1
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-
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2
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2
1
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1
-
-
1
1
7
1
-
-
-
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709
Ziegler
-
Activation of aromatic acids a ...
Pseudomonas sp., Pseudomonas sp. KB740
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151
171-176
1989
-
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4
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1
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11
-
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10
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4
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1
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-
-
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-
-
10
-
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707
Geissler
Purification and properties of ...
Rhodopseudomonas palustris
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1709-1714
1988
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-
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1
3
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2
2
1
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3
1
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1
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1
1
10
1
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-
-
-
-
1
1
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-
-
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-
-
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-
1
-
3
-
2
2
1
-
1
-
1
-
-
1
1
10
1
-
-
-
-
1
1
-
-
-
-
-
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708
Schennen
Anaerobic degradation of 2-flu ...
Pseudomonas sp., Pseudomonas sp. KB740
J. Bacteriol.
161
321-325
1985
-
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1
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11
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8
-
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-
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-
-
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1
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8
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-