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Literature summary for 5.4.4.2 extracted from

  • Domagalski, M.J.; Tkaczuk, K.L.; Chruszcz, M.; Skarina, T.; Onopriyenko, O.; Cymborowski, M.; Grabowski, M.; Savchenko, A.; Minor, W.
    Structure of isochorismate synthase DhbC from Bacillus anthracis (2013), Acta Crystallogr. Sect. F, 69, 956-961.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
gene dhbC, overexpression in Escherichia coli strain BL21-CodonPlus(DE3)-RIPL as His-tagged enzyme from vector pMCSG19c in fusion N-terminally with maltose binding protein and a Tobacco vein mottling virus protease cleaving site, the His-tag is cleavable by Tobacco etch virus protease, in M9 SeMET High-Yield growth medium Bacillus anthracis

Crystallization (Commentary)

Crystallization (Comment) Organism
purified recombinant detagged selenomethionine-labeled enzyme, hanging drop vapor diffusion method, mixing of 0.002 ml of protein solution containing 16 mg/ml protein in 300 mM NaCl, 10 mM HEPES, pH 7.5, 0.5 mM TCEP, with 0.002 ml of well solution containing 2 M ammonium sulfate, 2% v/v PEG 400, 100 mM HEPES. pH 7.5, 50 mM Bis-Tris, pH 5.5, X-ray diffraction structure determination and analysis at 2.4 A resolution, single-wavelength anomalous diffraction Bacillus anthracis

Metals/Ions

Metals/Ions Comment Organism Structure
Mg2+ Mg2+-dependent catalytic mechanism Bacillus anthracis

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
Chorismate Bacillus anthracis
-
Isochorismate
-
r
Chorismate Bacillus anthracis Ames
-
Isochorismate
-
r

Organism

Organism UniProt Comment Textmining
Bacillus anthracis Q81QQ0 gene dhbC
-
Bacillus anthracis Ames Q81QQ0 gene dhbC
-

Purification (Commentary)

Purification (Comment) Organism
recombinant selenomethionine-substituted, His-tagged enzyme from Escherichia coli strain BL21-CodonPlus(DE3)-RIPL by nickel affinity chromatography, His-tag cleavage, and a second step of nickel affinity chromatography Bacillus anthracis

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
Chorismate
-
Bacillus anthracis Isochorismate
-
r
Chorismate
-
Bacillus anthracis Ames Isochorismate
-
r

Subunits

Subunits Comment Organism
More enzyme structure comparisons and analysis, overview Bacillus anthracis

Synonyms

Synonyms Comment Organism
DhbC
-
Bacillus anthracis

General Information

General Information Comment Organism
additional information enzyme structure comparisons and analysis, active site structure, overview. Ala304 plays an important role in positioning the peptide-bond carbonyl, enabling the formation of a proper hydrogen bond to the isochorismate C2 hydroxyl Bacillus anthracis
physiological function the enzyme is essential for the biosynthesis of the siderophore bacillibactin by the pathogenic bacterium Bacillus anthracis