BRENDA - Enzyme Database show
show all sequences of 5.4.2.7

Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle

Panosian, T.D.; Nannemann, D.P.; Watkins, G.R.; Phelan, V.V.; McDonald, W.H.; Wadzinski, B.E.; Bachmann, B.O.; Iverson, T.M.; J. Biol. Chem. 286, 8043-8054 (2011)

Data extracted from this reference:

Activating Compound
Activating Compound
Commentary
Organism
Structure
D-Glucose 1,6-bisphosphate
there is a concentration-dependent enhancement of PPM activity between 0.0001 mM and 0.0025 mM D-glucose 1,6-bisphosphate
Bacillus cereus
Cloned(Commentary)
Commentary
Organism
expressed in Escherichia coli BL21-Gold (DE3) cells
Bacillus cereus
Crystallization (Commentary)
Crystallization
Organism
enzyme alone, co-crystallized with ribose 5-phosphate, co-crystallized with glucose 1,6-bisphosphate, and following activation with glucose 1,6-bisphosphate, hanging drop vapor diffusion method, using 100 mM Bis-Tris, pH 5.5, 50 mM MnCl2, 14% (w/v) polyethylene glycol 3350, and 75 mM NH4CH3COO
Bacillus cereus
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
0.263
-
D-ribose 5-phosphate
in 25 mM Tris-HCl, pH 8.0, and 0.1 mM MnCl2, 0.0005 mM glucose 1,6-bisphosphate,at 23C
Bacillus cereus
Metals/Ions
Metals/Ions
Commentary
Organism
Structure
Mn2+
only Mn2+-incorporated enzyme shows significant enzyme activity
Bacillus cereus
additional information
not dependent on Zn2+, Ni2+, Mg2+, and Co2+
Bacillus cereus
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
44000
-
x * 44000, SDS-PAGE
Bacillus cereus
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Bacillus cereus
Q818Z9
-
-
Bacillus cereus ATCC 14579
Q818Z9
-
-
Posttranslational Modification
Posttranslational Modification
Commentary
Organism
phosphoprotein
protein phosphorylation activates the enzyme
Bacillus cereus
Purification (Commentary)
Commentary
Organism
-
Bacillus cereus
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
alpha-D-ribose 1-phosphate
-
715660
Bacillus cereus
D-ribose 5-phosphate
-
-
-
r
alpha-D-ribose 1-phosphate
-
715660
Bacillus cereus ATCC 14579
D-ribose 5-phosphate
-
-
-
r
Subunits
Subunits
Commentary
Organism
?
x * 44000, SDS-PAGE
Bacillus cereus
Turnover Number [1/s]
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
10.2
-
D-ribose 5-phosphate
in 25 mM Tris-HCl, pH 8.0, and 0.1 mM MnCl2, 0.0005 mM glucose 1,6-bisphosphate,at 23C
Bacillus cereus
Activating Compound (protein specific)
Activating Compound
Commentary
Organism
Structure
D-Glucose 1,6-bisphosphate
there is a concentration-dependent enhancement of PPM activity between 0.0001 mM and 0.0025 mM D-glucose 1,6-bisphosphate
Bacillus cereus
Cloned(Commentary) (protein specific)
Commentary
Organism
expressed in Escherichia coli BL21-Gold (DE3) cells
Bacillus cereus
Crystallization (Commentary) (protein specific)
Crystallization
Organism
enzyme alone, co-crystallized with ribose 5-phosphate, co-crystallized with glucose 1,6-bisphosphate, and following activation with glucose 1,6-bisphosphate, hanging drop vapor diffusion method, using 100 mM Bis-Tris, pH 5.5, 50 mM MnCl2, 14% (w/v) polyethylene glycol 3350, and 75 mM NH4CH3COO
Bacillus cereus
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
0.263
-
D-ribose 5-phosphate
in 25 mM Tris-HCl, pH 8.0, and 0.1 mM MnCl2, 0.0005 mM glucose 1,6-bisphosphate,at 23C
Bacillus cereus
Metals/Ions (protein specific)
Metals/Ions
Commentary
Organism
Structure
Mn2+
only Mn2+-incorporated enzyme shows significant enzyme activity
Bacillus cereus
additional information
not dependent on Zn2+, Ni2+, Mg2+, and Co2+
Bacillus cereus
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
44000
-
x * 44000, SDS-PAGE
Bacillus cereus
Posttranslational Modification (protein specific)
Posttranslational Modification
Commentary
Organism
phosphoprotein
protein phosphorylation activates the enzyme
Bacillus cereus
Purification (Commentary) (protein specific)
Commentary
Organism
-
Bacillus cereus
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
alpha-D-ribose 1-phosphate
-
715660
Bacillus cereus
D-ribose 5-phosphate
-
-
-
r
alpha-D-ribose 1-phosphate
-
715660
Bacillus cereus ATCC 14579
D-ribose 5-phosphate
-
-
-
r
Subunits (protein specific)
Subunits
Commentary
Organism
?
x * 44000, SDS-PAGE
Bacillus cereus
Turnover Number [1/s] (protein specific)
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
10.2
-
D-ribose 5-phosphate
in 25 mM Tris-HCl, pH 8.0, and 0.1 mM MnCl2, 0.0005 mM glucose 1,6-bisphosphate,at 23C
Bacillus cereus
Other publictions for EC 5.4.2.7
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [C]
Temperature Range [C]
Temperature Stability [C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [C] (protein specific)
Temperature Range [C] (protein specific)
Temperature Stability [C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
748749
Meyer
Methanol-essential growth of ...
Escherichia coli, Escherichia coli MeSV1
Nat. Commun.
9
1508
2018
-
-
-
-
-
-
-
-
-
-
-
2
-
3
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
748271
Rivero
Biosynthesis of an antiviral ...
Escherichia coli, Escherichia coli ATCC 4157
J. Biotechnol.
249
34-41
2017
1
-
1
-
-
1
-
-
-
1
-
2
-
6
-
-
1
-
-
-
-
-
2
1
-
-
1
-
-
-
-
-
-
-
-
1
-
1
-
-
-
1
-
-
-
-
-
1
-
2
-
-
-
1
-
-
-
-
2
1
-
-
1
-
-
-
-
-
-
-
-
-
-
-
746733
Moustafa
A simple assay for determinin ...
Thermotoga maritima
Anal. Biochem.
501
75-81
2016
3
-
1
-
-
-
-
2
-
2
-
2
-
4
-
-
1
-
-
-
2
-
2
1
1
1
-
2
1
1
-
-
-
-
-
3
-
1
-
-
-
-
-
-
-
2
-
2
-
2
-
-
-
1
-
-
2
-
2
1
1
1
-
2
1
1
-
-
-
-
-
-
2
2
726977
Iverson
Molecular differences between ...
Bacillus cereus, Bacillus cereus DSM 31
Biochemistry
51
1964-1975
2012
1
-
1
1
4
1
-
-
-
1
-
2
-
3
-
1
1
-
-
-
-
-
2
1
1
-
-
-
1
-
-
-
-
-
-
1
-
1
-
1
4
1
-
-
-
-
-
1
-
2
-
-
1
1
-
-
-
-
2
1
1
-
-
-
1
-
-
-
-
1
1
-
-
-
727521
Walther
The PGM3 gene encodes the majo ...
Saccharomyces cerevisiae
FEBS Lett.
586
4114-4118
2012
1
-
1
-
-
-
-
2
-
1
-
2
-
2
-
-
1
-
-
-
3
-
3
-
1
-
-
-
1
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
2
-
1
-
2
-
-
-
1
-
-
3
-
3
-
1
-
-
-
1
-
-
-
-
1
1
-
-
-
715660
Panosian
Bacillus cereus phosphopentomu ...
Bacillus cereus, Bacillus cereus ATCC 14579
J. Biol. Chem.
286
8043-8054
2011
1
-
1
1
-
-
-
1
-
2
1
-
-
3
-
1
1
-
-
-
-
-
2
1
-
-
-
1
-
-
-
-
-
-
-
1
-
1
-
1
-
-
-
-
-
1
-
2
1
-
-
-
1
1
-
-
-
-
2
1
-
-
-
1
-
-
-
-
-
-
-
-
-
-
713648
Panosian
Crystallization and preliminar ...
Bacillus cereus, Bacillus cereus ATCC 14579D
Acta Crystallogr. Sect. F
66
811-814
2010
-
-
1
1
-
-
-
-
-
-
1
-
-
4
-
-
1
-
-
-
-
-
2
1
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
1
-
-
-
-
2
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
705839
Horinouchi
Screening and characterization ...
Escherichia coli, Lysinibacillus sphaericus, Lysinibacillus sphaericus AKU 229
N. Biotechnol.
26
75-82
2009
-
1
2
-
-
-
-
-
-
1
2
3
-
6
-
-
-
-
-
-
-
-
3
-
-
-
-
-
-
-
-
-
-
-
-
-
1
2
-
-
-
-
-
-
-
-
-
1
2
3
-
-
-
-
-
-
-
-
3
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
695174
Taverna-Porro
-
Chemoenzymic preparation of nu ...
Escherichia coli
Tetrahedron Lett.
49
2642-2645
2008
1
-
-
-
-
-
-
-
-
1
-
-
-
1
-
-
-
-
-
-
-
-
5
-
1
-
-
-
1
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
5
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
662012
Rashid
Presence of a novel phosphopen ...
Thermococcus kodakarensis
J. Bacteriol.
186
4185-4191
2004
-
-
1
-
-
-
-
1
-
4
1
-
-
5
-
-
1
-
-
-
1
-
2
1
1
1
1
1
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
1
-
4
1
-
-
-
-
1
-
-
1
-
2
1
1
1
1
1
-
-
-
-
-
-
-
-
-
-
3348
Hamamoto
Phosphopentomutase of Bacillus ...
Escherichia coli, Geobacillus stearothermophilus, Geobacillus stearothermophilus TH6-2
Biosci. Biotechnol. Biochem.
62
1103-1108
1998
-
-
1
-
-
-
-
-
-
-
3
3
-
5
-
-
1
-
-
-
1
-
18
2
2
-
4
-
1
-
1
-
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
-
3
3
-
-
-
1
-
-
1
-
18
2
2
-
4
-
1
-
1
1
-
-
-
-
-
-
3347
Barbas
-
Overexpression and substrate s ...
Escherichia coli
Bioorg. Chem.
19
261-269
1991
-
-
1
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
-
4
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
4
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3345
Ipata
Induction of phosphoribomutase ...
Bacillus cereus
Biochim. Biophys. Acta
755
253-256
1983
-
-
-
-
-
-
-
-
-
-
-
1
-
2
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3346
Barsky
Purification and characterizat ...
Rattus norvegicus
Biochim. Biophys. Acta
743
162-171
1983
2
-
-
-
-
1
1
2
-
2
2
-
-
2
-
-
1
-
-
2
1
1
3
1
-
-
1
-
1
-
-
-
-
-
-
2
-
-
-
-
-
1
-
1
-
2
-
2
2
-
-
-
-
1
-
2
1
1
3
1
-
-
1
-
1
-
-
-
-
-
-
-
-
-
3344
Tozzi
A coupled optical enzyme assay ...
Escherichia coli
Anal. Biochem.
123
265-269
1982
-
1
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3343
Leer
Multiple forms of phosphodeoxy ...
Escherichia coli
Biochemistry
14
599-607
1975
1
-
-
-
-
-
-
3
-
-
1
-
-
2
-
-
1
-
-
-
1
-
1
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
3
-
-
1
-
-
-
-
1
-
-
1
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
3342
Nygaard
Nucleoside-catabolizing enzyme ...
Salmonella enterica subsp. enterica serovar Typhimurium
Eur. J. Biochem.
36
267-272
1973
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3341
Munch-Petersen
Mutants constitutive for nucle ...
Escherichia coli
Eur. J. Biochem.
27
208-215
1972
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3340
Hammer-Jespersen
Phosphodeoxyribomutase from Es ...
Escherichia coli
Eur. J. Biochem.
17
397-407
1970
3
-
-
-
-
-
7
2
-
3
2
-
-
2
-
-
1
-
-
-
1
-
2
1
-
-
-
-
1
-
-
-
-
-
-
3
-
-
-
-
-
-
-
7
-
2
-
3
2
-
-
-
-
1
-
-
1
-
2
1
-
-
-
-
1
-
-
-
-
-
-
-
-
-
3339
Kammen
Phosphopentomutases. I. Identi ...
Oryctolagus cuniculus
J. Biol. Chem.
244
4888-4893
1969
2
-
-
-
-
-
-
-
-
1
1
-
-
1
-
-
-
-
-
1
-
-
1
-
-
-
-
-
1
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
1
1
-
-
-
-
-
-
1
-
-
1
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-