BRENDA - Enzyme Database show
show all sequences of 5.4.2.7

Phosphopentomutase of Bacillus stearothermophilus TH6-2: the enzyme and its gene ppm

Hamamoto, T.; Noguchi, T.; Midorikawa, Y.; Biosci. Biotechnol. Biochem. 62, 1103-1108 (1998)

Data extracted from this reference:

Cloned(Commentary)
Commentary
Organism
overexpression in Escherichia coli
Geobacillus stearothermophilus
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
43735
-
1 * 43735, calculation from nucleotide sequence; 1 * 43735, deduced from nucleotide sequence
Geobacillus stearothermophilus
48000
-
1 * 48000, SDS-PAGE
Geobacillus stearothermophilus
53000
-
gel filtration
Geobacillus stearothermophilus
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
alpha-D-ribose 1-phosphate
Geobacillus stearothermophilus
PPM is involve in the salvage pathway of nucleoside synthesis
D-ribose 5-phosphate
-
Geobacillus stearothermophilus
?
additional information
Geobacillus stearothermophilus
the enzyme is involved in the salvage pathway of nucleoside synthesis
?
-
-
-
additional information
Geobacillus stearothermophilus TH6-2
the enzyme is involved in the salvage pathway of nucleoside synthesis
?
-
-
-
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Escherichia coli
-
-
-
Geobacillus stearothermophilus
-
; TH6-2
-
Geobacillus stearothermophilus TH6-2
-
TH6-2
-
Purification (Commentary)
Commentary
Organism
recombinant PPM, Toyopearl HW-55, DEAE-Toyopearl, Butyl-Toyopearl, Sephacryl S-330
Geobacillus stearothermophilus
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
41.7
-
-
Geobacillus stearothermophilus
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
2,3-dideoxyribose 5-phosphate
-
3348
Geobacillus stearothermophilus
2,3-dideoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus
-
2,3-dideoxyribose 5-phosphate
-
3348
Geobacillus stearothermophilus
2,3-dideoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus
r
2,3-dideoxyribose 5-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
2,3-dideoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
-
2-deoxy-D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
2-deoxy-D-ribose 1-phosphate
-
3348
Geobacillus stearothermophilus
r
2-deoxyribose 5-phosphate
-
3348
Escherichia coli
2-deoxyribose 1-phosphate
-
3348
Escherichia coli
-
2-deoxyribose 5-phosphate
at 156% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus
2-deoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus
-
2-deoxyribose 5-phosphate
at 156% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus TH6-2
2-deoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
-
alpha-D-ribose 1-phosphate
-
3348
Geobacillus stearothermophilus
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
r
alpha-D-ribose 1-phosphate
PPM is involve in the salvage pathway of nucleoside synthesis
3348
Geobacillus stearothermophilus
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
?
arabinose 5-phosphate
-
3348
Geobacillus stearothermophilus
arabinose 1-phosphate
-
3348
Geobacillus stearothermophilus
r
D-Arabinose 5-phosphate
-
3348
Escherichia coli
D-Arabinose 1-phosphate
-
-
-
-
D-Arabinose 5-phosphate
at 8.61% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus
D-Arabinose 1-phosphate
-
-
-
-
D-Arabinose 5-phosphate
at 8.61% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus TH6-2
D-Arabinose 1-phosphate
-
-
-
-
D-ribose 1-phosphate
only the reverse reaction is mentioned: D-ribose 5-phosphate to D-ribose 1-phosphate
3348
Escherichia coli
D-ribose 5-phosphate
-
-
-
-
D-ribose 1-phosphate
only the reverse reaction is mentioned: D-ribose 5-phosphate to D-ribose 1-phosphate
3348
Geobacillus stearothermophilus
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
-
D-ribose 1-phosphate
only the reverse reaction is mentioned: D-ribose 5-phosphate to D-ribose 1-phosphate
3348
Geobacillus stearothermophilus TH6-2
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
-
additional information
the enzyme is involved in the salvage pathway of nucleoside synthesis
3348
Geobacillus stearothermophilus
?
-
-
-
-
additional information
the enzyme is involved in the salvage pathway of nucleoside synthesis
3348
Geobacillus stearothermophilus TH6-2
?
-
-
-
-
Subunits
Subunits
Commentary
Organism
monomer
-
Escherichia coli
monomer
1 * 43735, calculation from nucleotide sequence; 1 * 43735, deduced from nucleotide sequence; 1 * 48000, SDS-PAGE
Geobacillus stearothermophilus
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
45
-
-
Escherichia coli
65
-
at pH 8.0; ribose 1-phosphate synthesis, at pH 8.0
Geobacillus stearothermophilus
Temperature Stability [°C]
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
50
-
pH 6.0-9.0, 1 h, stable
Geobacillus stearothermophilus
55
70
no loss of activity at 55°C at pH 8.0 after 15 min, complete loss of activity after 15 min at 70°C and pH 8.0
Geobacillus stearothermophilus
55
-
pH 8.0, 15 min, completely stable below
Geobacillus stearothermophilus
70
-
pH 8.0, 15 min, stable
Geobacillus stearothermophilus
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.5
-
at 50°C
Geobacillus stearothermophilus
pH Stability
pH Stability
pH Stability Maximum
Commentary
Organism
6
9
50°C, 1 h, stable
Geobacillus stearothermophilus
pI Value
Organism
Commentary
pI Value Maximum
pI Value
Geobacillus stearothermophilus
isoelectric focusing
-
4.85
Cloned(Commentary) (protein specific)
Commentary
Organism
overexpression in Escherichia coli
Geobacillus stearothermophilus
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
43735
-
1 * 43735, calculation from nucleotide sequence; 1 * 43735, deduced from nucleotide sequence
Geobacillus stearothermophilus
48000
-
1 * 48000, SDS-PAGE
Geobacillus stearothermophilus
53000
-
gel filtration
Geobacillus stearothermophilus
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
alpha-D-ribose 1-phosphate
Geobacillus stearothermophilus
PPM is involve in the salvage pathway of nucleoside synthesis
D-ribose 5-phosphate
-
Geobacillus stearothermophilus
?
additional information
Geobacillus stearothermophilus
the enzyme is involved in the salvage pathway of nucleoside synthesis
?
-
-
-
additional information
Geobacillus stearothermophilus TH6-2
the enzyme is involved in the salvage pathway of nucleoside synthesis
?
-
-
-
Purification (Commentary) (protein specific)
Commentary
Organism
recombinant PPM, Toyopearl HW-55, DEAE-Toyopearl, Butyl-Toyopearl, Sephacryl S-330
Geobacillus stearothermophilus
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
41.7
-
-
Geobacillus stearothermophilus
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
2,3-dideoxyribose 5-phosphate
-
3348
Geobacillus stearothermophilus
2,3-dideoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus
-
2,3-dideoxyribose 5-phosphate
-
3348
Geobacillus stearothermophilus
2,3-dideoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus
r
2,3-dideoxyribose 5-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
2,3-dideoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
-
2-deoxy-D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
2-deoxy-D-ribose 1-phosphate
-
3348
Geobacillus stearothermophilus
r
2-deoxyribose 5-phosphate
-
3348
Escherichia coli
2-deoxyribose 1-phosphate
-
3348
Escherichia coli
-
2-deoxyribose 5-phosphate
at 156% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus
2-deoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus
-
2-deoxyribose 5-phosphate
at 156% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus TH6-2
2-deoxyribose 1-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
-
alpha-D-ribose 1-phosphate
-
3348
Geobacillus stearothermophilus
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
r
alpha-D-ribose 1-phosphate
PPM is involve in the salvage pathway of nucleoside synthesis
3348
Geobacillus stearothermophilus
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
?
arabinose 5-phosphate
-
3348
Geobacillus stearothermophilus
arabinose 1-phosphate
-
3348
Geobacillus stearothermophilus
r
D-Arabinose 5-phosphate
-
3348
Escherichia coli
D-Arabinose 1-phosphate
-
-
-
-
D-Arabinose 5-phosphate
at 8.61% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus
D-Arabinose 1-phosphate
-
-
-
-
D-Arabinose 5-phosphate
at 8.61% of the activity relative to ribose 5-phosphate
3348
Geobacillus stearothermophilus TH6-2
D-Arabinose 1-phosphate
-
-
-
-
D-ribose 1-phosphate
only the reverse reaction is mentioned: D-ribose 5-phosphate to D-ribose 1-phosphate
3348
Escherichia coli
D-ribose 5-phosphate
-
-
-
-
D-ribose 1-phosphate
only the reverse reaction is mentioned: D-ribose 5-phosphate to D-ribose 1-phosphate
3348
Geobacillus stearothermophilus
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus
-
D-ribose 1-phosphate
only the reverse reaction is mentioned: D-ribose 5-phosphate to D-ribose 1-phosphate
3348
Geobacillus stearothermophilus TH6-2
D-ribose 5-phosphate
-
3348
Geobacillus stearothermophilus TH6-2
-
additional information
the enzyme is involved in the salvage pathway of nucleoside synthesis
3348
Geobacillus stearothermophilus
?
-
-
-
-
additional information
the enzyme is involved in the salvage pathway of nucleoside synthesis
3348
Geobacillus stearothermophilus TH6-2
?
-
-
-
-
Subunits (protein specific)
Subunits
Commentary
Organism
monomer
-
Escherichia coli
monomer
1 * 43735, calculation from nucleotide sequence; 1 * 43735, deduced from nucleotide sequence; 1 * 48000, SDS-PAGE
Geobacillus stearothermophilus
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
45
-
-
Escherichia coli
65
-
at pH 8.0; ribose 1-phosphate synthesis, at pH 8.0
Geobacillus stearothermophilus
Temperature Stability [°C] (protein specific)
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
50
-
pH 6.0-9.0, 1 h, stable
Geobacillus stearothermophilus
55
70
no loss of activity at 55°C at pH 8.0 after 15 min, complete loss of activity after 15 min at 70°C and pH 8.0
Geobacillus stearothermophilus
55
-
pH 8.0, 15 min, completely stable below
Geobacillus stearothermophilus
70
-
pH 8.0, 15 min, stable
Geobacillus stearothermophilus
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.5
-
at 50°C
Geobacillus stearothermophilus
pH Stability (protein specific)
pH Stability
pH Stability Maximum
Commentary
Organism
6
9
50°C, 1 h, stable
Geobacillus stearothermophilus
pI Value (protein specific)
Organism
Commentary
pI Value Maximum
pI Value
Geobacillus stearothermophilus
isoelectric focusing
-
4.85
Other publictions for EC 5.4.2.7
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
748749
Meyer
Methanol-essential growth of ...
Escherichia coli, Escherichia coli MeSV1
Nat. Commun.
9
1508
2018
-
-
-
-
-
-
-
-
-
-
-
2
-
3
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
748271
Rivero
Biosynthesis of an antiviral ...
Escherichia coli, Escherichia coli ATCC 4157
J. Biotechnol.
249
34-41
2017
1
-
1
-
-
1
-
-
-
1
-
2
-
6
-
-
1
-
-
-
-
-
2
1
-
-
1
-
-
-
-
-
-
-
-
1
-
1
-
-
-
1
-
-
-
-
-
1
-
2
-
-
-
1
-
-
-
-
2
1
-
-
1
-
-
-
-
-
-
-
-
-
-
-
746733
Moustafa
A simple assay for determinin ...
Thermotoga maritima
Anal. Biochem.
501
75-81
2016
3
-
1
-
-
-
-
2
-
2
-
2
-
4
-
-
1
-
-
-
2
-
2
1
1
1
-
2
1
1
-
-
-
-
-
3
-
1
-
-
-
-
-
-
-
2
-
2
-
2
-
-
-
1
-
-
2
-
2
1
1
1
-
2
1
1
-
-
-
-
-
-
2
2
726977
Iverson
Molecular differences between ...
Bacillus cereus, Bacillus cereus DSM 31
Biochemistry
51
1964-1975
2012
1
-
1
1
4
1
-
-
-
1
-
2
-
3
-
1
1
-
-
-
-
-
2
1
1
-
-
-
1
-
-
-
-
-
-
1
-
1
-
1
4
1
-
-
-
-
-
1
-
2
-
-
1
1
-
-
-
-
2
1
1
-
-
-
1
-
-
-
-
1
1
-
-
-
727521
Walther
The PGM3 gene encodes the majo ...
Saccharomyces cerevisiae
FEBS Lett.
586
4114-4118
2012
1
-
1
-
-
-
-
2
-
1
-
2
-
2
-
-
1
-
-
-
3
-
3
-
1
-
-
-
1
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
2
-
1
-
2
-
-
-
1
-
-
3
-
3
-
1
-
-
-
1
-
-
-
-
1
1
-
-
-
715660
Panosian
Bacillus cereus phosphopentomu ...
Bacillus cereus, Bacillus cereus ATCC 14579
J. Biol. Chem.
286
8043-8054
2011
1
-
1
1
-
-
-
1
-
2
1
-
-
3
-
1
1
-
-
-
-
-
2
1
-
-
-
1
-
-
-
-
-
-
-
1
-
1
-
1
-
-
-
-
-
1
-
2
1
-
-
-
1
1
-
-
-
-
2
1
-
-
-
1
-
-
-
-
-
-
-
-
-
-
713648
Panosian
Crystallization and preliminar ...
Bacillus cereus, Bacillus cereus ATCC 14579D
Acta Crystallogr. Sect. F
66
811-814
2010
-
-
1
1
-
-
-
-
-
-
1
-
-
4
-
-
1
-
-
-
-
-
2
1
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
1
-
-
-
-
2
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
705839
Horinouchi
Screening and characterization ...
Escherichia coli, Lysinibacillus sphaericus, Lysinibacillus sphaericus AKU 229
N. Biotechnol.
26
75-82
2009
-
1
2
-
-
-
-
-
-
1
2
3
-
6
-
-
-
-
-
-
-
-
3
-
-
-
-
-
-
-
-
-
-
-
-
-
1
2
-
-
-
-
-
-
-
-
-
1
2
3
-
-
-
-
-
-
-
-
3
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
695174
Taverna-Porro
-
Chemoenzymic preparation of nu ...
Escherichia coli
Tetrahedron Lett.
49
2642-2645
2008
1
-
-
-
-
-
-
-
-
1
-
-
-
1
-
-
-
-
-
-
-
-
5
-
1
-
-
-
1
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
5
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
662012
Rashid
Presence of a novel phosphopen ...
Thermococcus kodakarensis
J. Bacteriol.
186
4185-4191
2004
-
-
1
-
-
-
-
1
-
4
1
-
-
5
-
-
1
-
-
-
1
-
2
1
1
1
1
1
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
1
-
4
1
-
-
-
-
1
-
-
1
-
2
1
1
1
1
1
-
-
-
-
-
-
-
-
-
-
3348
Hamamoto
Phosphopentomutase of Bacillus ...
Escherichia coli, Geobacillus stearothermophilus, Geobacillus stearothermophilus TH6-2
Biosci. Biotechnol. Biochem.
62
1103-1108
1998
-
-
1
-
-
-
-
-
-
-
3
3
-
5
-
-
1
-
-
-
1
-
18
2
2
-
4
-
1
-
1
-
-
1
-
-
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1
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