BRENDA - Enzyme Database show
show all sequences of 4.2.2.8

Examination of the substrate specificity of heparin and heparan sulfate lyases

Linhardt, R.J.; Turnbull, J.E.; Wang, H.M.; Lofanathan, D.; Gallagher, J.T.; Biochemistry 29, 2611-2617 (1990)

Data extracted from this reference:

Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
heparan sulfate
Pedobacter heparinus
-
?
-
-
-
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Pedobacter heparinus
-
-
-
Purification (Commentary)
Commentary
Organism
-
Pedobacter heparinus
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
heparan sulfate
-
37408
Pedobacter heparinus
non-sulfated di- and tetrasaccharides with terminal 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends + SO42-
-
37408
Pedobacter heparinus
?
heparan sulfate
-
37408
Pedobacter heparinus
?
-
-
-
-
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
43
-
-
Pedobacter heparinus
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7
-
-
Pedobacter heparinus
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
heparan sulfate
Pedobacter heparinus
-
?
-
-
-
Purification (Commentary) (protein specific)
Commentary
Organism
-
Pedobacter heparinus
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
heparan sulfate
-
37408
Pedobacter heparinus
non-sulfated di- and tetrasaccharides with terminal 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends + SO42-
-
37408
Pedobacter heparinus
?
heparan sulfate
-
37408
Pedobacter heparinus
?
-
-
-
-
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
43
-
-
Pedobacter heparinus
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7
-
-
Pedobacter heparinus
Other publictions for EC 4.2.2.8
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
748820
Gu
Photoswitchable heparinase II ...
Pedobacter heparinus
Org. Lett.
20
48-51
2018
-
1
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
747456
Hu
Probing cleavage promiscuity ...
Pedobacter heparinus
Carbohydr. Polym.
173
276-285
2017
-
-
1
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
16
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
16
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
747570
Gu
Expanding the catalytic promi ...
Pedobacter heparinus
Chemistry
23
2548-2551
2017
-
-
-
-
3
-
-
5
-
-
2
-
-
1
-
-
-
-
-
-
-
-
3
-
-
-
-
5
-
-
-
-
-
-
-
-
-
-
-
-
3
-
-
-
-
5
-
-
2
-
-
-
-
-
-
-
-
-
3
-
-
-
-
5
-
-
-
-
-
-
-
-
-
-
747916
Ulaganathan
Conformational flexibility of ...
Bacteroides thetaiotaomicron, Bacteroides thetaiotaomicron DSM 2079
Glycobiology
27
176-187
2017
-
-
1
1
3
-
-
1
-
-
-
-
-
4
-
-
-
-
-
-
-
-
11
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
1
3
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
11
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
747454
Carnachan
Determining the extent of hep ...
Pedobacter heparinus
Carbohydr. Polym.
152
592-597
2016
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
729269
Hashimoto
Crystal structure of Pedobacte ...
Pedobacter heparinus, Pedobacter heparinus DSM 2366
Biochemistry
53
777-786
2014
-
-
-
1
11
-
-
-
-
-
-
-
-
4
-
-
-
-
-
-
-
-
-
-
-
-
6
-
-
-
-
-
-
-
-
-
-
-
-
1
11
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
6
-
-
-
-
-
-
-
-
-
-
-
730858
Dong
Structural basis of heparan su ...
Bacteroides thetaiotaomicron, Bacteroides thetaiotaomicron DSM 2079
Protein Cell
3
950-961
2012
-
-
1
1
-
-
-
-
-
-
-
-
-
3
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
714553
Chen
Biochemical analysis and kinet ...
Pedobacter heparinus
Biotechnol. Bioeng.
108
1841-1851
2011
-
-
1
-
1
1
11
1
-
1
-
-
-
1
-
-
1
-
1
-
1
1
1
1
1
-
3
-
1
-
-
-
-
-
-
-
-
1
-
-
1
1
-
11
-
1
-
1
-
-
-
-
-
1
1
-
1
1
1
1
1
-
3
-
1
-
-
-
-
1
1
-
-
-
701676
Babu
Fluorescent-tagged heparan sul ...
Pedobacter heparinus
Anal. Biochem.
396
124-132
2010
-
-
1
-
-
-
-
-
-
-
-
-
-
1
-
-
1
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
701885
Hyun
Cloning, overexpression, and c ...
Bacteroides stercoris, Bacteroides stercoris HJ-15
Appl. Microbiol. Biotechnol.
86
879-890
2010
-
-
1
-
4
-
3
2
-
3
1
-
-
5
-
-
1
-
-
-
5
-
6
1
1
1
1
-
1
1
-
-
-
1
-
-
-
1
-
-
4
-
-
3
-
2
-
3
1
-
-
-
-
1
-
-
5
-
6
1
1
1
1
-
1
1
-
1
-
-
-
-
-
-
714027
Raman
Differential effects of hepari ...
Pedobacter heparinus
Biochem. Biophys. Res. Commun.
398
191-193
2010
-
-
-
-
-
-
-
-
-
-
-
-
-
3
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
1
1
-
-
-
682098
Rops
Heparan sulfate on activated g ...
Pedobacter heparinus
Nephrol. Dial. Transplant.
22
1070-1077
2007
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
665613
Wei
Distinct substrate specificiti ...
Pedobacter heparinus
J. Biol. Chem.
280
15742-15748
2005
-
-
-
-
-
-
-
-
-
-
-
-
-
3
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
664047
Chai
Relative susceptibilities of t ...
Pedobacter heparinus
Biochemistry
43
8590-8599
2004
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
649969
Pojasek
Histidine 295 and histidine 51 ...
Pedobacter heparinus
Biochemistry
39
4012-4019
2000
-
-
1
-
13
-
1
11
-
-
-
-
-
2
-
-
1
1
-
-
-
-
1
-
1
-
-
12
1
-
-
-
1
-
-
-
-
1
-
-
13
-
-
1
1
11
-
-
-
-
-
-
-
1
-
-
-
-
1
-
1
-
-
12
1
-
-
-
-
-
-
-
-
-
37411
Graham
Inhibition of platelet heparit ...
Homo sapiens
Biochem. Mol. Biol. Int.
37
239-246
1995
-
-
-
-
-
-
2
-
-
-
-
-
-
1
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
37409
Yamada
Structural studies on the tri- ...
Pedobacter heparinus
Glycobiology
4
69-78
1994
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
37410
Suhahara
Structural studies on the olig ...
Pedobacter heparinus
Glycobiology
4
535-544
1994
-
-
-
-
-
-
-
-
-
-
-
-
-
4
-
-
-
-
-
2
-
-
-
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
-
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
37412
Brickman
Heparitinase inhibition of mes ...
Pedobacter heparinus
Dev. Biol.
164
484-501
1994
-
1
-
-
-
-
-
-
-
-
-
-
-
4
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
37407
Desai
Specificity studies on the hep ...
Pedobacter heparinus
Biochemistry
32
8140-8145
1993
-
-
-
-
-
-
-
-
-
-
-
1
-
2
-
-
1
-
-
-
-
-
5
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
1
-
-
-
-
5
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
37406
Nader H.B.; Porcionatto M.A.; Tersariol
Purification and substrate spe ...
Pedobacter heparinus
J. Biol. Chem.
265
16807-16813
1990
-
-
-
-
-
-
-
-
-
-
-
1
-
2
-
-
1
-
-
-
-
-
6
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
1
-
-
-
-
6
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
37408
Linhardt
Examination of the substrate s ...
Pedobacter heparinus
Biochemistry
29
2611-2617
1990
-
-
-
-
-
-
-
-
-
-
-
1
-
2
-
-
1
-
-
-
-
-
2
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
1
-
-
-
-
2
-
1
-
-
-
1
-
-
-
-
-
-
-
-
-
37404
Nader
Heparin sequences in the hepar ...
Pedobacter heparinus
Proc. Natl. Acad. Sci. USA
84
3565-3569
1987
-
-
-
-
-
-
-
-
-
-
-
1
-
2
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
37405
Prinz
Metabolism of sulfated glycosa ...
Rattus norvegicus
Biochim. Biophys. Acta
630
402-413
1980
-
-
-
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
-
1
-
-
2
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
1
-
-
2
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
5978
Hovingh
The enzymatic degradation of h ...
Flavobacteriia
J. Biol. Chem.
245
6170-6175
1970
-
-
-
-
-
-
5
-
-
3
-
-
-
2
-
-
1
-
-
-
-
1
1
-
1
1
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
5
-
-
-
3
-
-
-
-
-
1
-
-
-
1
1
-
1
1
-
-
1
-
-
-
-
-
-
-
-
-