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Literature summary for 4.1.2.4 extracted from
- A fluorogenic screening for enantio- and diastereoselectivity of 2-deoxy-D-ribose-5-phosphate aldolases (2016), Synlett, 27, 11-16 .
No PubMed abstract available
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| expression in Escherichia coli BL21(DE3) | Escherichia coli |
| expression in Escherichia coli BL21(DE3) | Rhodococcus erythropolis |
| expression in Escherichia coli BL21(DE3) | Thermotoga maritima |
| expression in Escherichia coli BL21(DE3) | Pyrobaculum aerophilum |
| expression in Escherichia coli BL21(DE3) | Colwellia psychrerythraea |
| expression in Escherichia coli BL21(DE3) | Shewanella halifaxensis |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Colwellia psychrerythraea | - |
- |
- |
| Escherichia coli | - |
- |
- |
| Pyrobaculum aerophilum | - |
- |
- |
| Rhodococcus erythropolis | - |
- |
- |
| Shewanella halifaxensis | - |
- |
- |
| Thermotoga maritima | - |
- |
- |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| 2-deoxy-D-ribose | - |
Escherichia coli | D-glyceraldehyde + acetaldehyde | - |
? |  |
| 2-deoxy-D-ribose | - |
Rhodococcus erythropolis | D-glyceraldehyde + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose | - |
Pyrobaculum aerophilum | D-glyceraldehyde + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose | - |
Colwellia psychrerythraea | D-glyceraldehyde + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose | - |
Shewanella halifaxensis | D-glyceraldehyde + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose 5-phosphate | - |
Escherichia coli | D-glyceraldehyde 3-phosphate + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose 5-phosphate | - |
Rhodococcus erythropolis | D-glyceraldehyde 3-phosphate + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose 5-phosphate | - |
Thermotoga maritima | D-glyceraldehyde 3-phosphate + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose 5-phosphate | - |
Pyrobaculum aerophilum | D-glyceraldehyde 3-phosphate + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose 5-phosphate | - |
Colwellia psychrerythraea | D-glyceraldehyde 3-phosphate + acetaldehyde | - |
? | |
| 2-deoxy-D-ribose 5-phosphate | - |
Shewanella halifaxensis | D-glyceraldehyde 3-phosphate + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | - |
Escherichia coli | 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | - |
Rhodococcus erythropolis | 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | - |
Shewanella halifaxensis | 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | low activity | Thermotoga maritima | 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | low activity | Pyrobaculum aerophilum | 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | higher activity with 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose than with 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | Colwellia psychrerythraea | 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose | low activity | Escherichia coli | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose | low activity | Rhodococcus erythropolis | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose | low activity | Thermotoga maritima | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose | low activity | Pyrobaculum aerophilum | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose | low activity | Colwellia psychrerythraea | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose | low activity | Shewanella halifaxensis | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose | - |
Shewanella halifaxensis | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose | low activity | Escherichia coli | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose | low activity | Rhodococcus erythropolis | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose | low activity | Thermotoga maritima | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose | low activity | Pyrobaculum aerophilum | ? | - |
? | |
| 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose | higher activity with 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose than with 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose | Colwellia psychrerythraea | ? | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| 2-deoxy-D-ribose-5-phosphate aldolase | - |
Escherichia coli |
| 2-deoxy-D-ribose-5-phosphate aldolase | - |
Rhodococcus erythropolis |
| 2-deoxy-D-ribose-5-phosphate aldolase | - |
Thermotoga maritima |
| 2-deoxy-D-ribose-5-phosphate aldolase | - |
Pyrobaculum aerophilum |
| 2-deoxy-D-ribose-5-phosphate aldolase | - |
Colwellia psychrerythraea |
| 2-deoxy-D-ribose-5-phosphate aldolase | - |
Shewanella halifaxensis |
| DERA | - |
Escherichia coli |
| DERA | - |
Rhodococcus erythropolis |
| DERA | - |
Thermotoga maritima |
| DERA | - |
Pyrobaculum aerophilum |
| DERA | - |
Colwellia psychrerythraea |
| DERA | - |
Shewanella halifaxensis |
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