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Literature summary for 3.4.21.92 extracted from
- New insights into the ATP-dependent Clp protease: Escherichia coli and beyond (1999), Mol. Microbiol., 32, 449-458.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| Clp sequenced | Pseudomonas aeruginosa |
| Clp sequenced | Rhodobacter capsulatus |
| Clp sequenced | Enterococcus faecalis |
| Clp sequenced | Streptococcus pyogenes |
| Clp sequenced | Myxococcus xanthus |
| Clp sequenced | Streptomyces coelicolor |
| Clp sequenced | Helicobacter pylori |
| Clp sequenced | Synechococcus sp. |
| Clp sequenced | Clostridium acetobutylicum |
| Clp sequenced | Porphyromonas gingivalis |
| Clp sequenced | Bordetella pertussis |
| Clp sequenced | Deinococcus radiodurans |
| Clp sequenced | Listeria monocytogenes |
| Clp sequenced | Chlorobaculum tepidum |
| Clp sequenced | Shewanella putrefaciens |
| Clp sequenced | Chlamydomonas reinhardtii |
| Clp sequenced | Chlorella vulgaris |
| Clp sequenced | Epifagus virginiana |
| Clp sequenced | Haemophilus influenzae |
| Clp sequenced | Lactococcus lactis |
| Clp sequenced | Marchantia polymorpha |
| Clp sequenced | Bacillus subtilis |
| Clp sequenced | Nicotiana tabacum |
| Clp sequenced | Oryza sativa |
| Clp sequenced | Paracoccus denitrificans |
| Clp sequenced | Pinus contorta |
| Clp sequenced | Pinus thunbergii |
| Clp sequenced | Streptococcus salivarius |
| Clp sequenced | Borreliella burgdorferi |
| Clp sequenced | Treponema pallidum |
| Clp sequenced | Triticum aestivum |
| Clp sequenced | Yersinia enterocolitica |
| Clp sequenced | Zea mays |
| Clp sequenced | Caulobacter vibrioides |
| Clp sequenced | Chlamydia trachomatis |
| Clp sequenced | Chlamydomonas moewusii |
| Clp sequenced | Aquifex aeolicus |
| Clp sequenced, nuclear encoded gene | Arabidopsis thaliana |
| Clp sequenced, nuclear encoded gene | Populus tremula |
| Clp sequenced, nuclear encoded gene | Fritillaria agrestis |
| Clp sequenced, nuclear encoded gene | Homo sapiens |
| Clp sequenced, nuclear encoded gene | Solanum lycopersicum |
| Clp sequenced, nuclear encoded gene | Mus musculus |
| Clp sequenced, nuclear encoded gene | Caenorhabditis elegans |
| Clp sequenced, plastid encoded gene | Cyanophora paradoxa |
| clpP gene detected | Salmonella enterica subsp. enterica serovar Typhimurium |
Crystallization (Commentary)
| Crystallization (Comment) | Organism |
|---|---|
- |
Escherichia coli |
Localization
| Localization | Comment | Organism | GeneOntology No. | Textmining |
|---|---|---|---|---|
| mitochondrion | - |
Populus tremula | 5739 | - |
| mitochondrion | - |
Homo sapiens | 5739 | - |
| mitochondrion | - |
Mus musculus | 5739 | - |
| mitochondrion | - |
Caenorhabditis elegans | 5739 | - |
| plastid | - |
Chlorella vulgaris | 9536 | - |
| plastid | - |
Epifagus virginiana | 9536 | - |
| plastid | - |
Fritillaria agrestis | 9536 | - |
| plastid | - |
Solanum lycopersicum | 9536 | - |
| plastid | - |
Marchantia polymorpha | 9536 | - |
| plastid | - |
Nicotiana tabacum | 9536 | - |
| plastid | - |
Oryza sativa | 9536 | - |
| plastid | - |
Pinus contorta | 9536 | - |
| plastid | - |
Pinus thunbergii | 9536 | - |
| plastid | - |
Triticum aestivum | 9536 | - |
| plastid | - |
Zea mays | 9536 | - |
| plastid | - |
Chlamydomonas moewusii | 9536 | - |
Metals/Ions
| Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|
| Mg2+ | ClpA degrades large proteins down to short peptides of 7 to 10 amino acids, the process requires both Mg2+ and ATP hydrolysis | Escherichia coli |  |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| additional information | Bacillus subtilis | ClpP linked to many activities, including sporulation, cell competence, stress tolerance and regulation of gene expression | ? | - |
? | |
| additional information | Escherichia coli | removing of irreversibly damaged polypeptides | ? | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Aquifex aeolicus | O67357 | - |
- |
| Arabidopsis thaliana | P56772 | - |
- |
| Arabidopsis thaliana | Q787X4 | - |
- |
| Bacillus subtilis | P80244 | - |
- |
| Bordetella pertussis | - |
- |
- |
| Borreliella burgdorferi | O51698 | - |
- |
| Caenorhabditis elegans | Q27539 | - |
- |
| Caulobacter vibrioides | B8GX16 | - |
- |
| Chlamydia trachomatis | P38002 | - |
- |
| Chlamydomonas moewusii | P42379 | - |
- |
| Chlamydomonas reinhardtii | P42380 | - |
- |
| Chlorella vulgaris | P56317 | - |
- |
| Chlorobaculum tepidum | - |
- |
- |
| Clostridium acetobutylicum | - |
- |
- |
| Cyanophora paradoxa | Q36863 | - |
- |
| Deinococcus radiodurans | - |
- |
- |
| Enterococcus faecalis | - |
- |
- |
| Epifagus virginiana | P30063 | - |
- |
| Escherichia coli | - |
- |
- |
| Fritillaria agrestis | O49081 | - |
- |
| Haemophilus influenzae | P43867 | - |
- |
| Helicobacter pylori | - |
- |
- |
| Homo sapiens | Q16740 | - |
- |
| Lactococcus lactis | Q9ZAB0 | - |
- |
| Listeria monocytogenes | - |
- |
- |
| Marchantia polymorpha | P12208 | - |
- |
| Mus musculus | O88696 | - |
- |
| Mycobacterium tuberculosis | P9WPC5 and P9WPC3 | - |
- |
| Mycobacterium tuberculosis H37Rv | P9WPC5 and P9WPC3 | - |
- |
| Myxococcus xanthus | - |
- |
- |
| Nicotiana tabacum | P12210 | tobacco | - |
| Oryza sativa | P0C312 | rice | - |
| Paracoccus denitrificans | P54414 | - |
- |
| Pinus contorta | P36387 | - |
- |
| Pinus thunbergii | P41609 | - |
- |
| Populus tremula | - |
x tremuloides | - |
| Porphyromonas gingivalis | - |
- |
- |
| Pseudomonas aeruginosa | - |
- |
- |
| Rhodobacter capsulatus | - |
- |
- |
| Salmonella enterica subsp. enterica serovar Typhimurium | - |
- |
- |
| Shewanella putrefaciens | - |
- |
- |
| Solanum lycopersicum | Q42886 | - |
- |
| Streptococcus pyogenes | - |
- |
- |
| Streptococcus salivarius | P36398 | - |
- |
| Streptomyces coelicolor | - |
- |
- |
| Synechococcus sp. | - |
strain PCC 7942-3 | - |
| Synechococcus sp. | O34125 | strain PCC 7942-2 | - |
| Synechococcus sp. | P54415 | strain PCC 7942-1 | - |
| Synechocystis sp. | P54416 | strain PCC 6803-1 | - |
| Synechocystis sp. | P74467 | strain PCC 6803-3 | - |
| Synechocystis sp. | Q59993 | strain PCC 6803-2 | - |
| Treponema pallidum | O84003 | - |
- |
| Triticum aestivum | P24064 | - |
- |
| Yersinia enterocolitica | O30612 | - |
- |
| Yersinia enterocolitica | Q60107 | - |
- |
| Zea mays | P12340 | corn, maize | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| additional information | ClpP linked to many activities, including sporulation, cell competence, stress tolerance and regulation of gene expression | Bacillus subtilis | ? | - |
? | |
| additional information | removing of irreversibly damaged polypeptides | Escherichia coli | ? | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| Clp protease | - |
Salmonella enterica subsp. enterica serovar Typhimurium |
| Clp protease | - |
Escherichia coli |
| Clp protease | - |
Pseudomonas aeruginosa |
| Clp protease | - |
Rhodobacter capsulatus |
| Clp protease | - |
Enterococcus faecalis |
| Clp protease | - |
Streptococcus pyogenes |
| Clp protease | - |
Myxococcus xanthus |
| Clp protease | - |
Streptomyces coelicolor |
| Clp protease | - |
Helicobacter pylori |
| Clp protease | - |
Clostridium acetobutylicum |
| Clp protease | - |
Porphyromonas gingivalis |
| Clp protease | - |
Populus tremula |
| Clp protease | - |
Bordetella pertussis |
| Clp protease | - |
Deinococcus radiodurans |
| Clp protease | - |
Listeria monocytogenes |
| Clp protease | - |
Chlorobaculum tepidum |
| Clp protease | - |
Shewanella putrefaciens |
| Clp protease | - |
Chlamydomonas reinhardtii |
| Clp protease | - |
Chlorella vulgaris |
| Clp protease | - |
Cyanophora paradoxa |
| Clp protease | - |
Epifagus virginiana |
| Clp protease | - |
Fritillaria agrestis |
| Clp protease | - |
Haemophilus influenzae |
| Clp protease | - |
Homo sapiens |
| Clp protease | - |
Lactococcus lactis |
| Clp protease | - |
Solanum lycopersicum |
| Clp protease | - |
Marchantia polymorpha |
| Clp protease | - |
Mus musculus |
| Clp protease | - |
Bacillus subtilis |
| Clp protease | - |
Nicotiana tabacum |
| Clp protease | - |
Oryza sativa |
| Clp protease | - |
Paracoccus denitrificans |
| Clp protease | - |
Pinus contorta |
| Clp protease | - |
Pinus thunbergii |
| Clp protease | - |
Streptococcus salivarius |
| Clp protease | - |
Synechococcus sp. |
| Clp protease | - |
Synechocystis sp. |
| Clp protease | - |
Borreliella burgdorferi |
| Clp protease | - |
Treponema pallidum |
| Clp protease | - |
Triticum aestivum |
| Clp protease | - |
Yersinia enterocolitica |
| Clp protease | - |
Zea mays |
| Clp protease | - |
Caenorhabditis elegans |
| Clp protease | - |
Caulobacter vibrioides |
| Clp protease | - |
Chlamydia trachomatis |
| Clp protease | - |
Chlamydomonas moewusii |
| Clp protease | - |
Arabidopsis thaliana |
| Clp protease | - |
Mycobacterium tuberculosis |
| Clp protease | - |
Aquifex aeolicus |
| ClpC | - |
Listeria monocytogenes |
| ClpQ | - |
Escherichia coli |
Cofactor
| Cofactor | Comment | Organism | Structure |
|---|---|---|---|
| ATP | ATP dependent, for full proteolytic activity ClpP must associate with one of two related ATPase subunits, ClpA or ClpX, other nucleoside triphosphates cannot substitute for ATP | Escherichia coli | |
| ATP | ATP dependent, for full proteolytic activity ClpP must associate with one of two related ATPase subunits, ClpA or ClpX, other nucleoside triphosphates cannot substitute for ATP | Bacillus subtilis | |
| ATP | ATP dependent, for full proteolytic activity ClpP must associate with one of two related ATPase subunits, ClpA or ClpX, other nucleoside triphosphates cannot substitute for ATP | Yersinia enterocolitica | |
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