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Literature summary for 3.1.21.3 extracted from

  • Park, S.Y.; Lee, H.J.; Song, J.M.; Sun, J.; Hwang, H.J.; Nishi, K.; Kim, J.S.
    Structural characterization of a modification subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016 (2012), Acta Crystallogr. Sect. D, 68, 1570-1577.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
expressed in Escherichia coli B834 (DE3) cells Vibrio vulnificus

Crystallization (Commentary)

Crystallization (Comment) Organism
hanging drop vapor diffusion method, using 22% (w/v) polyethylene glycol 8000, 0.02 M imidazole pH 7.5, 5 mM beta-mercaptoethanol Vibrio vulnificus

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
60000
-
x * 60000, calculated from amino acid sequence Vibrio vulnificus

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
duplex DNA + ATP Vibrio vulnificus
-
double-stranded DNA fragments with terminal 5'-phosphate + ADP + phosphate
-
?

Organism

Organism UniProt Comment Textmining
Vibrio vulnificus Q7MPU6
-
-

Purification (Commentary)

Purification (Comment) Organism
nickel-affinity column chromatography, ion-exchange chromatography, and gel filtration Vibrio vulnificus

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
duplex DNA + ATP
-
Vibrio vulnificus double-stranded DNA fragments with terminal 5'-phosphate + ADP + phosphate
-
?

Subunits

Subunits Comment Organism
? x * 60000, calculated from amino acid sequence Vibrio vulnificus

Synonyms

Synonyms Comment Organism
HsdM
-
Vibrio vulnificus
type I restriction enzyme
-
Vibrio vulnificus

Cofactor

Cofactor Comment Organism Structure
S-adenosyl-L-methionine
-
Vibrio vulnificus