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Literature summary for 2.7.7.6 extracted from

  • Krawczyk, K.; Sawicki, J.
    The uneven rate of the molecular evolution of gene sequences of DNA-Dependent RNA polymerase I of the Genus Lamium L. (2013), Int. J. Mol. Sci., 14, 11376-11391.
    View publication on PubMedView publication on EuropePMC

Application

Application Comment Organism
diagnostics evaluation of rpo genes as phylogenetic markers on the example of the genus Lamium, Lamiaceae. The most promising phylogenetic marker is the rpoA gene, while the least useful gene appears to be rpoC1 Lamium

Cloned(Commentary)

Cloned (Comment) Organism
genes rpoA, rpoB, rpoC1, and rpoC2 encoding the enzyme subunits, DNA and amino acid sequence determination and analysis, phylogenetic analysis, number of sites containing synonymous and nonsynonymous substitutions, overview Lamium

Localization

Localization Comment Organism GeneOntology No. Textmining
chloroplast
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Lamium 9507
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Organism

Organism UniProt Comment Textmining
Lamium
-
genes rpoA, rpoB, rpoC1, and rpoC2 encoding the enzyme subunits
-

Synonyms

Synonyms Comment Organism
DNA-dependent RNA polymerase I
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Lamium
plastid-encoded polymerase
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Lamium

General Information

General Information Comment Organism
evolution the rpo genes that encode the enzyme subunits, rpoA, rpoB, rpoC1, and rpoC2, are relatively rapidly evolving sequences. Determination of the rate of the molecular evolution of rpo genes and to evaluation as phylogenetic markers on the example of the genus Lamium, Lamiaceae, represented by 66 specimens. Distribution of substitution rates across rpo genes as calculated in HyPhy using the GTR model of evolution, overview. The process of evolution of the RNA polymerase type I enzyme in genus Lamium is due not only to the genetic drift Lamium
physiological function RNA polymerase type I (plastid-encoded polymerase, PEP) is one of the key chloroplast enzymes Lamium