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Literature summary for 2.7.11.25 extracted from

  • Feng, K.; Liu, F.; Zou, J.; Xing, G.; Deng, P.; Song, W.; Tong, W.; Nie, X.
    Genome-wide identification, evolution, and co-expression network analysis of mitogen-activated protein kinase kinase kinases in Brachypodium distachyon (2016), Front. Plant Sci., 7, 1400.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
identification and genetic structure of 86 MAPKKK proteins encoded by 73 MAPKKK genes in Brachypodium distachyon, chromosomal locations, sequence analysis, and phylogenetic analysis and tree of 73 MAKKK family genes, detailed overview. Expression of splicing transcripts Brachypodium distachyon

Localization

Localization Comment Organism GeneOntology No. Textmining
chloroplast
-
Brachypodium distachyon 9507
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cytoplasm
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Brachypodium distachyon 5737
-
additional information subcellular locations of MAKKK proteins in Brachypodium distachyon Brachypodium distachyon
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-
nucleus
-
Brachypodium distachyon 5634
-

Organism

Organism UniProt Comment Textmining
Brachypodium distachyon
-
-
-

Source Tissue

Source Tissue Comment Organism Textmining
anther
-
Brachypodium distachyon
-
embryo
-
Brachypodium distachyon
-
leaf
-
Brachypodium distachyon
-
additional information expression patterns of roots, stems, and leaves, overview. 68 MAPKKK proteins encoded by 63 MAPKKK genes (22 MEKK subfamily members, 38 Raf subfamily members, and 3 ZIK subfamily members) are detected. BdMAPKKK genes expression patterns at different developmental stage tissues, two visualized hierarchy cluster of different developmental stages and organs are constructed Brachypodium distachyon
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pistil
-
Brachypodium distachyon
-
root
-
Brachypodium distachyon
-
stem
-
Brachypodium distachyon
-

Subunits

Subunits Comment Organism
More domain and motif analysis of Brachypodium distachyon MAPKKKs, overview Brachypodium distachyon

Synonyms

Synonyms Comment Organism
MAPKKK
-
Brachypodium distachyon
mitogen-activated protein kinase kinase kinase
-
Brachypodium distachyon

pI Value

Organism Comment pI Value Maximum pI Value
Brachypodium distachyon pI values of 73 MAPKKK genes, sequence calculation 10.41 4.44

Expression

Organism Comment Expression
Brachypodium distachyon expression profiles of MAPKKK genes in Brachypodium upon virus, heat and drought stresses and under diurnal conditions, overview additional information

General Information

General Information Comment Organism
evolution identification of 86 MAPKKK proteins encoded by 73 MAPKKK genes in Brachypodium. Phylogenetic analysis of MAPKKK family from Arabidopsis, rice, and Brachypodium classifies them into three subfamilies, of which 28 belong to MEKK, 52 to Raf, and 6 to ZIK subfamily, respectively. Conserved protein motif, exon-intron organization, and splicing intron phase in kinase domains support the evolutionary relationships inferring from the phylogenetic analysis. Gene duplication analysis suggests the chromosomal segment duplication happened before the divergence of the rice and Brachypodium, while all of three tandem duplicated gene pairs happened after their divergence. Coexpression network of MAPK, MAPKK, and MAPKKK in Brachypodium and evolutionary and functional characterization of MAPKKK family in Brachypodium, gene duplication, especially chromosomal segment duplication act vital roles in MAPKKK gene expansion in Brachypodium distachyon, overview Brachypodium distachyon
metabolism predicted MAPK cascades with their three main members MAPKKK, MKK, and MPK with the same subcellular localization, overview Brachypodium distachyon
physiological function the MAPKKK genes are involved in various signaling pathways Brachypodium distachyon