Crystallization (Comment) | Organism |
---|---|
unliganded StPLK (P212121) and two different tetragonal (P43212) crystal forms (form I and form II) of its complex with PL, ADP, and Mg2+, X-ray diffraction structure determination and analysis at 2.2-2.6 A resolution, modelling | Salmonella enterica subsp. enterica serovar Typhimurium |
Inhibitors | Comment | Organism | Structure |
---|---|---|---|
ADP | at high concentrations, product inhibition | Salmonella enterica subsp. enterica serovar Typhimurium | |
pyridoxal | at high concentrations, substrate inhibition | Salmonella enterica subsp. enterica serovar Typhimurium | |
pyridoxal 5'-phosphate | at high concentrations, product inhibition | Salmonella enterica subsp. enterica serovar Typhimurium |
KM Value [mM] | KM Value Maximum [mM] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
additional information | - |
additional information | steady-state kinetics | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.044 | - |
pyridoxal | pH 6.6, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.06 | - |
pyridoxamine | pH 8.5, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.1 | - |
ATP | with pyridoxal, pH 6.6, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.12 | - |
ATP | with pyridoxamine, pH 8.5, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium |
Metals/Ions | Comment | Organism | Structure |
---|---|---|---|
Mg2+ | required, Mg2+ ion can be located near the bound phosphate, it is coordinated with O3 of the ADP beta-phosphate and four water molecules | Salmonella enterica subsp. enterica serovar Typhimurium |
Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|
ATP + pyridoxal | Salmonella enterica subsp. enterica serovar Typhimurium | - |
ADP + pyridoxal 5'-phosphate | - |
? | |
ATP + pyridoxamine | Salmonella enterica subsp. enterica serovar Typhimurium | - |
ADP + pyridoxamine 5'-phosphate | - |
? |
Organism | UniProt | Comment | Textmining |
---|---|---|---|
Salmonella enterica subsp. enterica serovar Typhimurium | A0A0F7J8S0 | - |
- |
Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|
ATP + pyridoxal | - |
Salmonella enterica subsp. enterica serovar Typhimurium | ADP + pyridoxal 5'-phosphate | - |
? | |
ATP + pyridoxal | preferred substrate | Salmonella enterica subsp. enterica serovar Typhimurium | ADP + pyridoxal 5'-phosphate | - |
? | |
ATP + pyridoxamine | - |
Salmonella enterica subsp. enterica serovar Typhimurium | ADP + pyridoxamine 5'-phosphate | - |
? | |
additional information | substrate binding strutures analysis from cyrstal structure of the enzyme-ligand complex, overview. ATP is covalently attached to Lys233 via a Schiff base linkage. In StPLK, the alpha-phosphate of ADP interacts with Ser201, Thr235, and nearby water molecule. The beta-phosphate of ADP interacts with Gly236, Asn164, one Mg2+ ion, and a few water molecules. Pyridoxal is covalently attached to an active site lysine residue (Lys233) forming a Schiff base, as well as to ADP, and a Mg2+ ion. Active site structure. Structure comparisons with other pyridoxal kinases from other species | Salmonella enterica subsp. enterica serovar Typhimurium | ? | - |
- |
Synonyms | Comment | Organism |
---|---|---|
PLK | - |
Salmonella enterica subsp. enterica serovar Typhimurium |
StPLK | - |
Salmonella enterica subsp. enterica serovar Typhimurium |
Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
---|---|---|---|
37 | - |
assay at | Salmonella enterica subsp. enterica serovar Typhimurium |
Temperature Minimum [°C] | Temperature Maximum [°C] | Comment | Organism |
---|---|---|---|
30 | 50 | activity range | Salmonella enterica subsp. enterica serovar Typhimurium |
Turnover Number Minimum [1/s] | Turnover Number Maximum [1/s] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
0.097 | - |
pyridoxamine | pH 8.5, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.097 | - |
ATP | with pyridoxamine, pH 8.5, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.107 | - |
pyridoxal | pH 6.6, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
0.107 | - |
ATP | with pyridoxal, pH 6.6, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium |
pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
---|---|---|---|
6.2 | 6.6 | with substrate pyridoxal | Salmonella enterica subsp. enterica serovar Typhimurium |
8.5 | - |
with substrate pyridoxamine | Salmonella enterica subsp. enterica serovar Typhimurium |
General Information | Comment | Organism |
---|---|---|
additional information | comparison of the structure of apo StPLK with its ligand-bound forms | Salmonella enterica subsp. enterica serovar Typhimurium |
kcat/KM Value [1/mMs-1] | kcat/KM Value Maximum [1/mMs-1] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
0.81 | - |
ATP | with pyridoxamine, pH 8.5, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
1.07 | - |
ATP | with pyridoxal, pH 6.6, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
1.62 | - |
pyridoxamine | pH 8.5, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium | |
2.43 | - |
pyridoxal | pH 6.6, 37°C | Salmonella enterica subsp. enterica serovar Typhimurium |