BRENDA - Enzyme Database
show all sequences of 2.4.2.24

Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis

Bernal, A.J.; Jensen, J.K.; Harholt, J.; S?rensen, S.; Moller, I.; Blaukopf, C.; Johansen, B.; de Lotto, R.; Pauly, M.; Scheller, H.V.; Willats, W.G.; Plant J. 52, 791-802 (2007) View publication on PubMed

Data extracted from this reference:

Cloned(Commentary)
Cloned (Commentary)
Organism
genomic DNA from BAC clone T2I1 in (i) pGEMTeasy for expression in Escherichia coli XL1Blue and sequencing, (ii) pCAMBIA2300 for transformation in Agrobacterium tumefaciens GV3101 and floral-flip plant transformation, (iii) pCAMBIA230035SuYFP (C-terminal yellow fluorescent protein (YFP) tag) and (iv) pCAMBIA330035SYFPu (N-terminal YFP tag) for expression and subcellular localization in Nicotiana benthamiana
Arabidopsis thaliana
Localization
Localization
Commentary
Organism
GeneOntology No.
Textmining
Golgi apparatus
N-terminal YFP tag (YFP-ATCSLD5), expression in Nicotiana benthamiana, confocal laser scanning, co-localisation with Golgi-marker STtmd-GFP, no co-localisation with endoplasmic reticulum (ER) marker HDEL-GFP, C-terminal fluorescent protein tag leads to mistargeting of ATCSLD5-YFP to ER
Arabidopsis thaliana
-
-
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ID
UDP-D-xylose + (1,4-beta-D-xylan)n
Arabidopsis thaliana
beta-(1,4)-xylan synthase activity, biosynthesis of xylan (major component of dicot wood)
UDP + (1,4-beta-D-xylan)n+1
-
-
?
Organism
Organism
UniProt
Commentary
Textmining
Arabidopsis thaliana
Q9SRW9
-
-
Purification (Commentary)
Purification (Commentary)
Organism
microsomal extraction by differential centrifugation using 50 mM HEPES-NaOH pH7.3, 400 microM sucrose, 4 mM dithiothreitol, EDTA for beta-(1,4)-xylan synthase activity measurements
Arabidopsis thaliana
Source Tissue
Source Tissue
Commentary
Organism
Textmining
cambium
cell layer of middle stem between second xylem interfasicular region and cortex corresponding to vascular cambium, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
cauline leaf
vasicular tissue, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
cotyledon
vasicular tissue, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
hypocotyl
high levels, otherwise ubiquitous (in silico analysis)
Arabidopsis thaliana
-
additional information
absent from flowers and siliques, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
additional information
complete loss of ATCSLD5 expression in mutant line atcsld5-1 with T-DNA homozygote insertion in first exon of ATCSLD5 gene, revealed by RT-PCR from 6-week old plants
Arabidopsis thaliana
-
parenchyma
weak expression in cortical and pith cells, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
phloem
weak expression, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression, possibly false positive due to loading of GUS reaction products via symplastic connections
Arabidopsis thaliana
-
root
shorter in absence of ATCSLD5 (ATCSLD5-1 mutant line) compared to wild-type plants, severe reduction in root length in presence of cellulose synthase inhibitor isoxaben abolished by complementation with wild-type ATCSLD5
Arabidopsis thaliana
-
rosette leaf
vasicular tissue, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
shoot tip
high levels, otherwise ubiquitous (in silico analysis)
Arabidopsis thaliana
-
stem
ATCSLD5-1 mutant line: reaction product 1,4-beta-D-xylan reduction most pronounced in top portion (independent of stem hight), absent from interfasicular tissue as revealed by immunocytochemistry
Arabidopsis thaliana
-
stem
reaction product 1,4-beta-D-xylan detectable in top, middle and base portion, present in xylem and interfasicular tissue as revealed by immunocytochemistry, ATCSLD5 most abundant during stem elongation between day 21 and 25 (in silico analysis)
Arabidopsis thaliana
-
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
additional information
-
microsomal homogalacturonan synthase activity reduced in absence of ATCSLD5 (ATCSLD5-1 mutant line)
Arabidopsis thaliana
additional information
-
microsomal xylan synthase activity reduced in absence of ATCSLD5 (ATCSLD5-1 mutant line)
Arabidopsis thaliana
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
Substrate Product ID
UDP-D-galacturonic acid + (1,4-beta-D-galacturonic acid)n
homogalacturonan synthase activity (substrate: galacturonic acid, GalA) decreased in absence of ATCSLD5 (ATCSLD5-1 mutant line)
694668
Arabidopsis thaliana
UDP + (1,4-beta-D-galacturonic acid)n+1
-
-
-
?
UDP-D-xylose + (1,4-beta-D-xylan)n
-
694668
Arabidopsis thaliana
UDP + (1,4-beta-D-xylan)n+1
precipitation of product by 70% ethanol (final concentration) in presence of wheat arabinoxylan, followed by washing and scintillation counting, control for incorporation into (1,4-beta-D-xylan) by digestion with endo-xylanase
-
-
?
UDP-D-xylose + (1,4-beta-D-xylan)n
beta-(1,4)-xylan synthase activity, biosynthesis of xylan (major component of dicot wood)
694668
Arabidopsis thaliana
UDP + (1,4-beta-D-xylan)n+1
-
-
-
?
Synonyms
Synonyms
Commentary
Organism
Arabidopsis thaliana cellulose synthase-like gene D family gene 5
-
Arabidopsis thaliana
ATCSLD
-
Arabidopsis thaliana
ATCSLD5
-
Arabidopsis thaliana
Cloned(Commentary) (protein specific)
Commentary
Organism
genomic DNA from BAC clone T2I1 in (i) pGEMTeasy for expression in Escherichia coli XL1Blue and sequencing, (ii) pCAMBIA2300 for transformation in Agrobacterium tumefaciens GV3101 and floral-flip plant transformation, (iii) pCAMBIA230035SuYFP (C-terminal yellow fluorescent protein (YFP) tag) and (iv) pCAMBIA330035SYFPu (N-terminal YFP tag) for expression and subcellular localization in Nicotiana benthamiana
Arabidopsis thaliana
Localization (protein specific)
Localization
Commentary
Organism
GeneOntology No.
Textmining
Golgi apparatus
N-terminal YFP tag (YFP-ATCSLD5), expression in Nicotiana benthamiana, confocal laser scanning, co-localisation with Golgi-marker STtmd-GFP, no co-localisation with endoplasmic reticulum (ER) marker HDEL-GFP, C-terminal fluorescent protein tag leads to mistargeting of ATCSLD5-YFP to ER
Arabidopsis thaliana
-
-
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ID
UDP-D-xylose + (1,4-beta-D-xylan)n
Arabidopsis thaliana
beta-(1,4)-xylan synthase activity, biosynthesis of xylan (major component of dicot wood)
UDP + (1,4-beta-D-xylan)n+1
-
-
?
Purification (Commentary) (protein specific)
Commentary
Organism
microsomal extraction by differential centrifugation using 50 mM HEPES-NaOH pH7.3, 400 microM sucrose, 4 mM dithiothreitol, EDTA for beta-(1,4)-xylan synthase activity measurements
Arabidopsis thaliana
Source Tissue (protein specific)
Source Tissue
Commentary
Organism
Textmining
cambium
cell layer of middle stem between second xylem interfasicular region and cortex corresponding to vascular cambium, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
cauline leaf
vasicular tissue, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
cotyledon
vasicular tissue, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
hypocotyl
high levels, otherwise ubiquitous (in silico analysis)
Arabidopsis thaliana
-
additional information
absent from flowers and siliques, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
additional information
complete loss of ATCSLD5 expression in mutant line atcsld5-1 with T-DNA homozygote insertion in first exon of ATCSLD5 gene, revealed by RT-PCR from 6-week old plants
Arabidopsis thaliana
-
parenchyma
weak expression in cortical and pith cells, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
phloem
weak expression, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression, possibly false positive due to loading of GUS reaction products via symplastic connections
Arabidopsis thaliana
-
root
shorter in absence of ATCSLD5 (ATCSLD5-1 mutant line) compared to wild-type plants, severe reduction in root length in presence of cellulose synthase inhibitor isoxaben abolished by complementation with wild-type ATCSLD5
Arabidopsis thaliana
-
rosette leaf
vasicular tissue, ATCSLD5 promoter driven beta-glucuronidase (GUS) expression
Arabidopsis thaliana
-
shoot tip
high levels, otherwise ubiquitous (in silico analysis)
Arabidopsis thaliana
-
stem
ATCSLD5-1 mutant line: reaction product 1,4-beta-D-xylan reduction most pronounced in top portion (independent of stem hight), absent from interfasicular tissue as revealed by immunocytochemistry
Arabidopsis thaliana
-
stem
reaction product 1,4-beta-D-xylan detectable in top, middle and base portion, present in xylem and interfasicular tissue as revealed by immunocytochemistry, ATCSLD5 most abundant during stem elongation between day 21 and 25 (in silico analysis)
Arabidopsis thaliana
-
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
additional information
-
microsomal homogalacturonan synthase activity reduced in absence of ATCSLD5 (ATCSLD5-1 mutant line)
Arabidopsis thaliana
additional information
-
microsomal xylan synthase activity reduced in absence of ATCSLD5 (ATCSLD5-1 mutant line)
Arabidopsis thaliana
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ID
UDP-D-galacturonic acid + (1,4-beta-D-galacturonic acid)n
homogalacturonan synthase activity (substrate: galacturonic acid, GalA) decreased in absence of ATCSLD5 (ATCSLD5-1 mutant line)
694668
Arabidopsis thaliana
UDP + (1,4-beta-D-galacturonic acid)n+1
-
-
-
?
UDP-D-xylose + (1,4-beta-D-xylan)n
-
694668
Arabidopsis thaliana
UDP + (1,4-beta-D-xylan)n+1
precipitation of product by 70% ethanol (final concentration) in presence of wheat arabinoxylan, followed by washing and scintillation counting, control for incorporation into (1,4-beta-D-xylan) by digestion with endo-xylanase
-
-
?
UDP-D-xylose + (1,4-beta-D-xylan)n
beta-(1,4)-xylan synthase activity, biosynthesis of xylan (major component of dicot wood)
694668
Arabidopsis thaliana
UDP + (1,4-beta-D-xylan)n+1
-
-
-
?
Other publictions for EC 2.4.2.24
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Synonyms
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
760055
Hsieh
Xylans of red and green algae ...
Arabidopsis thaliana, Klebsormidium flaccidum
Polymers (Basel)
11
354
2019
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2
-
14
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2
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5
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2
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2
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2
2
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760108
Han
Identification, classificatio ...
Klebsormidium flaccidum
Protoplasma
256
1119-1132
2019
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-
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-
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1
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1
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1
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3
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1
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1
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759855
Jensen
Identification of an algal xy ...
Klebsormidium flaccidum
New Phytol.
218
1049-1060
2018
-
-
1
-
-
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-
-
1
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1
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5
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1
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1
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5
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1
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1
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736997
Jensen
Arabidopsis thaliana IRX10 and ...
Arabidopsis thaliana, Physcomitrium patens, Plantago ovata
Plant J.
80
207-215
2014
-
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3
-
-
-
-
-
-
-
2
3
-
13
-
-
3
-
-
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12
2
6
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3
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2
3
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3
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12
2
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-
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-
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-
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-
723391
Lee
Arabidopsis family GT43 member ...
Arabidopsis thaliana
Plant Cell Physiol.
53
135-143
2012
-
-
2
-
-
-
-
-
2
-
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8
-
-
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2
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2
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4
2
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2
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2
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2
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2
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2
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2
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-
2
-
-
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4
4
-
-
-
723486
Lee
Biochemical characterization o ...
Populus trichocarpa
Plant Signal. Behav.
7
332-337
2012
-
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2
-
-
-
-
8
2
-
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8
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2
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2
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2
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8
2
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2
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4
4
-
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694650
Lee
The irregular xylem9 mutant is ...
Arabidopsis thaliana
Plant Cell Physiol.
48
1624-1634
2007
1
-
-
-
-
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-
1
1
-
-
1
-
3
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1
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1
2
-
10
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2
-
1
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1
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1
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1
1
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1
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1
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1
2
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10
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1
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1
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-
-
-
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-
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-
694668
Bernal
Disruption of ATCSLD5 results ...
Arabidopsis thaliana
Plant J.
52
791-802
2007
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1
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1
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1
-
11
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1
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13
2
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3
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3
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1
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1
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1
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1
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13
2
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3
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682462
Orfila
QUASIMODO1 is expressed in vas ...
Arabidopsis thaliana
Planta
222
613-622
2005
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2
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1
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1
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660079
Urahara
-
A beta-(1->4)-xylosyltransfera ...
Hordeum vulgare
Physiol. Plant.
122
169-180
2004
7
-
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-
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9
1
2
2
-
1
-
1
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1
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2
2
-
9
-
2
1
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1
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7
-
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9
-
1
2
2
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1
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1
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2
2
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9
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1
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1
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489795
Gregory
Comparative subcellular immuno ...
Phaseolus vulgaris
Phytochemistry
59
249-259
2002
-
-
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-
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1
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5
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1
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1
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489796
Kerry
Differential behaviour of four ...
Phaseolus vulgaris
Phytochemistry
57
1055-1060
2001
-
1
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3
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1
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489794
Baydoun
-
Distribution of xylosyltransfe ...
Pisum sativum
J. Exp. Bot.
48
1209-1214
1997
-
-
-
-
-
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1
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1
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1
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1
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1
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489786
Suzuki
-
Xylan synthase activity in iso ...
Zinnia elegans
Plant Cell Physiol.
32
303-306
1991
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1
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1
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1
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1
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489793
Baydoun
The interaction of xylosyltran ...
Pisum sativum
Biochem. J.
257
853-858
1989
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1
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1
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1
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1
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489788
Bolwell
Arabinan synthase and xylan sy ...
Phaseolus vulgaris
Biochem. J.
210
497-507
1983
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489790
Bolwell
Induction by growth factors of ...
Phaseolus vulgaris
Biochem. J.
210
509-515
1983
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489791
Dalessandro
xylan synthetase activity in d ...
Acer pseudoplatanus
Planta
151
53-60
1981
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489792
Dalessandro
Increase of xylan synthetase a ...
Acer pseudoplatanus, Populus x canadensis
Planta
151
61-67
1981
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8
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489787
Ben-Arie
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Cell-free xylan synthesizing e ...
Avena sativa
Plant Cell Physiol.
14
427-434
1973
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489789
Odzuck
-
Biosynthesis of pure araban an ...
Vigna mungo
Phytochemistry
11
2489-2494
1972
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489785
Bailey
Xylan synthesis from uridine-d ...
Zea mays
Proc. Natl. Acad. Sci. USA
56
1586-1593
1966
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5
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