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Literature summary for 1.1.1.219 extracted from
- Characterization of dihydroflavonol 4-reductase (DFR) genes and their association with cold and freezing stress in Brassica rapa (2014), Gene, 550, 46-55.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| gene BrDFR1, on chromosome A02, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR10, on chromosome A06, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR11, on chromosome A03, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR12, on chromosome A08, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR2, on chromosome A09, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR3, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR3, on chromosome A02, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR4, on chromosome A09, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR5, on chromosome A09, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR6, on chromosome A09, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR7, on chromosome A09, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR8, on chromosome A06, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
| gene BrDFR9, on chromosome A06, genotyping, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, RT-PCR expression profiling of genotypes, and real-time quantitative PCR analysis | Brassica rapa subsp. pekinensis |
Molecular Weight [Da]
| Molecular Weight [Da] | Molecular Weight Maximum [Da] | Comment | Organism |
|---|---|---|---|
| 34762 | - |
- |
Brassica rapa subsp. pekinensis |
| 34860 | - |
- |
Brassica rapa subsp. pekinensis |
| 35420 | - |
- |
Brassica rapa subsp. pekinensis |
| 35520 | - |
- |
Brassica rapa subsp. pekinensis |
| 35860 | - |
- |
Brassica rapa subsp. pekinensis |
| 35910 | - |
- |
Brassica rapa subsp. pekinensis |
| 36158 | - |
- |
Brassica rapa subsp. pekinensis |
| 36320 | - |
- |
Brassica rapa subsp. pekinensis |
| 39650 | - |
- |
Brassica rapa subsp. pekinensis |
| 40450 | - |
- |
Brassica rapa subsp. pekinensis |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| dihydrokaempferol + NADPH + H+ | Brassica rapa subsp. pekinensis | - |
leucopelargonidin + NADP+ | - |
? |  |
| dihydromyricetin + NADPH + H+ | Brassica rapa subsp. pekinensis | - |
leucodelphinidin + NADP+ | - |
? | |
| dihydroquercetin + NADPH + H+ | Brassica rapa subsp. pekinensis | - |
cis-3,4-leucocyanidin + NADP+ | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Brassica rapa subsp. pekinensis | M4D235 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4DRB9 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4DU26 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4DU27 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4DU28 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4E380 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4E7I9 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4E7J1 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4E7J2 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4ECU0 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4ES88 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
| Brassica rapa subsp. pekinensis | M4FB76 | cvs. Palgangbaechu, 8053, and Seoulbaechu | - |
Source Tissue
| Source Tissue | Comment | Organism | Textmining |
|---|---|---|---|
| flower bud | - |
Brassica rapa subsp. pekinensis | - |
| flower bud | high expression level | Brassica rapa subsp. pekinensis | - |
| leaf | - |
Brassica rapa subsp. pekinensis | - |
| additional information | organ-specific DFR expression analysis | Brassica rapa subsp. pekinensis | - |
| root | - |
Brassica rapa subsp. pekinensis | - |
| stem | - |
Brassica rapa subsp. pekinensis | - |
| stem | weak expression | Brassica rapa subsp. pekinensis | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| dihydrokaempferol + NADPH + H+ | - |
Brassica rapa subsp. pekinensis | leucopelargonidin + NADP+ | - |
? | |
| dihydromyricetin + NADPH + H+ | - |
Brassica rapa subsp. pekinensis | leucodelphinidin + NADP+ | - |
? | |
| dihydroquercetin + NADPH + H+ | - |
Brassica rapa subsp. pekinensis | cis-3,4-leucocyanidin + NADP+ | - |
? | |
Subunits
| Subunits | Comment | Organism |
|---|---|---|
| ? | x * 34760, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 34860, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 35420, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 35520, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 35860, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 35910, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 36150, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 36320, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 39650, sequence calculation | Brassica rapa subsp. pekinensis |
| ? | x * 40450, sequence calculation | Brassica rapa subsp. pekinensis |
| More | sequence analysis and structure homology, overview | Brassica rapa subsp. pekinensis |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| BrDFR1 | - |
Brassica rapa subsp. pekinensis |
| BrDFR10 | - |
Brassica rapa subsp. pekinensis |
| BrDFR11 | - |
Brassica rapa subsp. pekinensis |
| BrDFR12 | - |
Brassica rapa subsp. pekinensis |
| BrDFR2 | - |
Brassica rapa subsp. pekinensis |
| BrDFR3 | - |
Brassica rapa subsp. pekinensis |
| BrDFR4 | - |
Brassica rapa subsp. pekinensis |
| BrDFR5 | - |
Brassica rapa subsp. pekinensis |
| BrDFR6 | - |
Brassica rapa subsp. pekinensis |
| BrDFR7 | - |
Brassica rapa subsp. pekinensis |
| BrDFR8 | - |
Brassica rapa subsp. pekinensis |
| BrDFR9 | - |
Brassica rapa subsp. pekinensis |
| DFR | - |
Brassica rapa subsp. pekinensis |
Cofactor
| Cofactor | Comment | Organism | Structure |
|---|---|---|---|
| NADPH | - |
Brassica rapa subsp. pekinensis | |
pI Value
| Organism | Comment | pI Value Maximum | pI Value |
|---|---|---|---|
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.2 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.21 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.26 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.36 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.41 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.45 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.49 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.66 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
5.9 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
6.09 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
6.2 |
| Brassica rapa subsp. pekinensis | sequence calculation | - |
8.65 |
Expression
| Organism | Comment | Expression |
|---|---|---|
| Brassica rapa subsp. pekinensis | induction of gene BrDFR10 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR2 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR3 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR4 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR5 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR6 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR8 by cold stress dependent on the genotypes, overview | up |
| Brassica rapa subsp. pekinensis | induction of gene BrDFR9 by cold stress dependent on the genotypes, overview | up |
General Information
| General Information | Comment | Organism |
|---|---|---|
| physiological function | BrDFR isozymes are regulated by two transcription factors, BrMYB2-2 and BrTT8, contrasting with anthocyanin accumulation and cold and freezing stress | Brassica rapa subsp. pekinensis |
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