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Information on EC 6.5.1.4 - RNA 3'-terminal-phosphate cyclase (ATP) and Organism(s) Pseudomonas aeruginosa

for references in articles please use BRENDA:EC6.5.1.4

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IUBMB Comments

The enzyme converts the 3′-terminal phosphate of various RNA substrates into the 2′,3′-cyclic phosphodiester in an ATP-dependent reaction. Catalysis occurs by a three-step mechanism, starting with the activation of the enzyme by ATP, forming a phosphoramide bond between adenylate and a histidine residue [5,6]. The adenylate group is then transferred to the 3′-phosphate terminus of the substrate, forming the capped structure [RNA]-3′-(5′-diphosphoadenosine). Finally, the enzyme catalyses an attack of the vicinal O-2′ on the 3′-phosphorus, which results in formation of cyclic phosphate and release of the adenylate. The enzyme also has a polynucleotide 5′ adenylylation activity . cf. EC 6.5.1.5, RNA 3′-terminal-phosphate cyclase (GTP).

The taxonomic range for the selected organisms is: Pseudomonas aeruginosa
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria, Archaea
Reaction Schemes
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[RNA]-3'-(3'-phospho-ribonucleoside)
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[RNA]-3'-(2',3'-cyclophospho)-ribonucleoside

Synonyms
rcl1p, rna 3'-terminal phosphate cyclase, rna 3'-phosphate cyclase, rna cyclase, st-rtc, more

SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
RNA 3'-terminal phosphate cyclase
RNA cyclase
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RNA-3'-phosphate cyclase
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Ligation
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SYSTEMATIC NAME
IUBMB Comments
RNA-3'-phosphate:RNA ligase (cyclizing, AMP-forming)
The enzyme converts the 3'-terminal phosphate of various RNA substrates into the 2',3'-cyclic phosphodiester in an ATP-dependent reaction. Catalysis occurs by a three-step mechanism, starting with the activation of the enzyme by ATP, forming a phosphoramide bond between adenylate and a histidine residue [5,6]. The adenylate group is then transferred to the 3'-phosphate terminus of the substrate, forming the capped structure [RNA]-3'-(5'-diphosphoadenosine). Finally, the enzyme catalyses an attack of the vicinal O-2' on the 3'-phosphorus, which results in formation of cyclic phosphate and release of the adenylate. The enzyme also has a polynucleotide 5' adenylylation activity [7]. cf. EC 6.5.1.5, RNA 3'-terminal-phosphate cyclase (GTP).
CAS REGISTRY NUMBER
COMMENTARY hide
85638-41-1
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SUBSTRATE
PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
LITERATURE
COMMENTARY hide
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + RNA 3'-terminal-phosphate
AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate
show the reaction diagram
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Substrates: -
Products: -
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top print hide Go to Organism Search
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
Highest Expressing Human Cell Lines
Cell Line Links Gene Links
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
A0A0C7D026_PSEAI
341
0
36637
TrEMBL
-
A0A367MB07_PSEAI
183
0
19818
TrEMBL
-
A0A7M2ZP11_PSEAI
341
0
36636
TrEMBL
-
A0AAQ3QYM5_PSEAI
341
0
36665
TrEMBL
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CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
gene encoding cyclase like protein present
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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Filipowicz, W.; Billy, E.; Drabikowski, K.; Genschik, P.
Cyclases of the 3'-terminal phosphate in RNA: a new family of RNA processing enzymes conserved in Eucarya, Bacteria and Archaea
Acta Biochim. Pol.
45
895-906
1998
Homo sapiens, no activity in Helicobacter pylori, no activity in Bacillus subtilis, no activity in Synechocystis sp., Mus musculus, Drosophila melanogaster, Danio rerio, Caenorhabditis elegans, Arabidopsis thaliana, Schizosaccharomyces pombe, Saccharomyces cerevisiae, Toxoplasma gondii, Dictyostelium discoideum, Pseudomonas aeruginosa, Aquifex aeolicus, Methanocaldococcus jannaschii, Escherichia coli, Xenopus sp., no activity in Haemophilus influenzae, no activity in Mycoplasma genitalium
Manually annotated by BRENDA team