Reference on EC 4.1.99.13 - (6-4)DNA photolyase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Schroder, H.C.; Krasko, A.; Gundacker, D.; Leys, S.P.; Muller, I.M.; Muller, W.E.
Molecular and functional analysis of the (6-4) photolyase from the hexactinellid Aphrocallistes vastus
Biochim. Biophys. Acta
1651
41-49
2003
Aphrocallistes vastus (Q86RA1), Aphrocallistes vastus
Hitomi, K.; Nakamura, H.; Kim, S.T.; Mizukoshi, T.; Ishikawa, T.; Iwai, S.; Todo, T.
Role of two histidines in the (6-4) photolyase reaction
J. Biol. Chem.
276
10103-10109
2001
Xenopus laevis
Weber, S.; Kay, C.W.; Mogling, H.; Mobius, K.; Hitomi, K.; Todo, T.
Photoactivation of the flavin cofactor in Xenopus laevis (6 - 4) photolyase: observation of a transient tyrosyl radical by time-resolved electron paramagnetic resonance
Proc. Natl. Acad. Sci. USA
99
1319-1322
2002
Xenopus laevis
Yi, Y.; Yi, C.; Qian, L.; Min, L.; Long, C.; Linhan, B.; Zhirong, Y.; Dairong, Q.
Cloning and sequence analysis of the gene encoding (6-4) photolyase from Dunaliella salina
Biotechnol. Lett.
28
309-314
2006
Dunaliella salina (Q52Z99), Dunaliella salina
Yan Lv, X.; Rong Qiao, D.; Xiong, Y.; Xu, H.; You, F.F.; Cao, Y.; He, X.
Photoreactivation of (6-4) photolyase in Dunaliella salina
FEMS Microbiol. Lett.
283
42-46
2008
Dunaliella salina
Zhao, X.; Liu, J.; Hsu, D.S.; Zhao, S.; Taylor, J.S.; Sancar, A.
Reaction mechanism of (6-4) photolyase
J. Biol. Chem.
272
32580-32590
1997
Drosophila melanogaster
Hitomi, K.; Kim, S.T.; Iwai, S.; Harima, N.; Otoshi, E.; Ikenaga, M.; Todo, T.
Binding and catalytic properties of Xenopus (6-4) photolyase
J. Biol. Chem.
272
32591-32598
1997
Xenopus laevis
Schleicher, E.; Hitomi, K.; Kay, C.W.; Getzoff, E.D.; Todo, T.; Weber, S.
Electron nuclear double resonance differentiates complementary roles for active site histidines in (6-4) photolyase
J. Biol. Chem.
282
4738-4747
2007
Xenopus laevis
Li, J.; Uchida, T.; Ohta, T.; Todo, T.; Kitagawa, T.
Characteristic structure and environment in FAD cofactor of (6-4) photolyase along function revealed by resonance Raman spectroscopy
J. Phys. Chem. B
110
16724-16732
2006
Arabidopsis thaliana
Sancar, G.B.; Sancar, A.
Purification and characterization of DNA photolyases
Methods Enzymol.
408
121-156
2006
Drosophila melanogaster
Todo, T.; Tsuji, H.; Otoshi, E.; Hitomi, K.; Kim, S.T.; Ikenaga, M.
Characterization of a human homolog of (6-4) photolyase
Mutat. Res.
384
195-204
1997
Homo sapiens
Todo, T.; Ryo, H.; Borden, A.; Lawrence, C.; Sakaguchi, K.; Hirata, H.; Nomura, T.
Non-mutagenic repair of (6-4)photoproducts by (6-4)photolyase purified from Drosophila melanogaster
Mutat. Res.
385
83-93
1997
Drosophila melanogaster
Todo, T.; Takemori, H.; Ryo, H.; Ihara, M.; Matsunaga, T.; Nikaido, O.; Sato, K.; Nomura, T.
A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts
Nature
361
371-374
1993
Drosophila melanogaster
Wakasugi, M.; Abe, Y.; Yoshida, Y.; Matsunaga, T.; Nikaido, O.
Purification of a novel UV-damaged-DNA binding protein highly specific for (6-4) photoproduct
Nucleic Acids Res.
24
1099-1004
1996
Homo sapiens
Todo, T.; Kim, S.T.; Hitomi, K.; Otoshi, E.; Inui, T.; Morioka, H.; Kobayashi, H.; Ohtsuka, E.; Toh, H.; Ikenaga, M.
Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase
Nucleic Acids Res.
25
764-768
1997
Xenopus laevis
Yamamoto, J.; Hitomi, K.; Todo, T.; Iwai, S.
Synthesis of oligonucleotides containing the Dewar valence isomer of the (6-4) photoproduct and their application to (6-4) photolyase studies
Nucleic Acids Symp. Ser.
50
61-62
2006
Xenopus laevis
Iwai, S.; Mizukoshi, T.; Hitomi, K.; Todo, T.
Chemical synthesis of oligonucleotides containing the (6-4) photoproduct at the thymine-cytosine site and its repair by (6-4) photolyase
Nucleosides Nucleotides
18
1325-1327
1999
Xenopus laevis
Kim, S.T.; Malhotra, K.; Taylor, J.S.; Sancar, A.
Purification and partial characterization of (6-4) photoproduct DNA photolyase from Xenopus laevis
Photochem. Photobiol.
63
292-295
1996
Crotalus atrox, Xenopus laevis
Chen, J.J.; Mitchell, D.L.; Britt, A.B.
A light-dependent pathway for the elimination of UV-induced pyrimidine (6-4) pyrimidinone photoproducts in Arabidopsis
Plant Cell
6
1311-1317
1994
Arabidopsis thaliana
Todo, T.; Ryo, H.; Yamamoto, K.; Toh, H.; Inui, T.; Ayaki, H.; Nomura, T.; Ikenaga, M.
Similarity among the Drosophila (6-4)photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family
Science
272
109-112
1996
Drosophila melanogaster, Homo sapiens
Fukushima, N.; Naito, Y.; Ryoji, M.
Induction of (6-4) photolyase gene transcription by blue light in Xenopus A6 cells
Biochem. Biophys. Res. Commun.
383
231-234
2009
Xenopus laevis
de Lima-Bessa, K.M.; Armelini, M.G.; Chigancas, V.; Jacysyn, J.F.; Amarante-Mendes, G.P.; Sarasin, A.; Menck, C.F.
CPDs and 6-4PPs play different roles in UV-induced cell death in normal and NER-deficient human cells
DNA Repair
7
303-312
2008
Homo sapiens
Usman, A.; Brazard, J.; Martin, M.M.; Plaza, P.; Heijde, M.; Zabulon, G.; Bowler, C.
Spectroscopic characterization of a (6-4) photolyase from the green alga Ostreococcus tauri
J. Photochem. Photobiol. B Biol.
96
38-48
2009
Ostreococcus tauri (Q5IFN1), Ostreococcus tauri
Hitomi, K.; DiTacchio, L.; Arvai, A.S.; Yamamoto, J.; Kim, S.T.; Todo, T.; Tainer, J.A.; Iwai, S.; Panda, S.; Getzoff, E.D.
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes
Proc. Natl. Acad. Sci. USA
106
6962-6967
2009
Arabidopsis thaliana (O48652), Arabidopsis thaliana
Yamamoto, J.; Hitomi, K.; Hayashi, R.; Getzoff, E.D.; Iwai, S.
Role of the carbonyl group of the (6-4) photoproduct in the (6-4) photolyase reaction
Biochemistry
48
9306-9312
2009
Xenopus laevis
Glas, A.F.; Schneider, S.; Maul, M.J.; Hennecke, U.; Carell, T.
Crystal structure of the T(6-4)C lesion in complex with a (6-4) DNA photolyase and repair of UV-induced (6-4) and Dewar photolesions
Chemistry
15
10387-10396
2009
Drosophila melanogaster
Mueller, M.; Carell, T.
Structural biology of DNA photolyases and cryptochromes
Curr. Opin. Struct. Biol.
19
277-285
2009
Drosophila melanogaster, Arabidopsis thaliana (O48652)
Yamamoto, J.; Hitomi, K.; Hayashi, R.; Getzoff, E.D.; Iwai, S.
Recognition and reaction mechanisms of the (6-4) photolyase as determined by using a (6-4) photoproduct analog
Nucleic Acids Symp. Ser.
53
221-222
2009
Xenopus laevis
Zhang, Y.; Iwata, T.; Yamamoto, J.; Hitomi, K.; Iwai, S.; Todo, T.; Getzoff, E.D.; Kandori, H.
FTIR study of light-dependent activation and DNA repair processes of (6-4) photolyase
Biochemistry
50
3591-3598
2011
Xenopus laevis
Zhang, F.; Xu, H.; Cao, Y.; Wen, T.; Lin, J.; Ma, G.; Qiao, D.; Cao, Y.
Role of Lys281 in the Dunaliella salina (6-4) photolyase reaction
Curr. Microbiol.
62
146-151
2011
Dunaliella salina
Sadeghian, K.; Bocola, M.; Merz, T.; Schuetz, M.
Theoretical study on the repair mechanism of the (6-4) photolesion by the (6-4) photolyase
J. Am. Chem. Soc.
132
16285-16295
2010
Drosophila melanogaster
Glas, A.; Kaya, E.; Schneider, S.; Heil, K.; Fazio, D.; Maul, M.; Carell, T.
DNA (6-4) photolyases reduce dewar isomers for isomerization into (6-4) lesions
J. Am. Chem. Soc.
132
3254-3255
2010
Drosophila melanogaster (Q8SXK5)
Kondoh, M.; Hitomi, K.; Yamamoto, J.; Todo, T.; Iwai, S.; Getzoff, E.D.; Terazima, M.
Light-induced conformational change and product release in DNA repair by (6-4) photolyase
J. Am. Chem. Soc.
133
2183-2191
2011
Xenopus laevis
Li, J.; Liu, Z.; Tan, C.; Guo, X.; Wang, L.; Sancar, A.; Zhong, D.
Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase
Nature
466
887-890
2010
Arabidopsis thaliana
Chaves, I.; Nijman, R.M.; Biernat, M.A.; Bajek, M.I.; Brand, K.; da Silva, A.C.; Saito, S.; Yagita, K.; Eker, A.P.; van der Horst, G.T.
The potorous CPD photolyase rescues a cryptochrome-deficient mammalian circadian clock
PLoS ONE
6
e23447
2011
Arabidopsis thaliana
Yamamoto, J.; Martin, R.; Iwai, S.; Plaza, P.; Brettel, K.
Repair of the (6-4) photoproduct by DNA photolyase requires two photons
Angew. Chem. Int. Ed. Engl.
52
7432-7436
2013
Xenopus laevis
Yamada, D.; Zhang, Y.; Iwata, T.; Hitomi, K.; Getzoff, E.D.; Kandori, H.
Fourier-transform infrared study of the photoactivation process of Xenopus (6-4) photolyase
Biochemistry
51
5774-5783
2012
Xenopus laevis
Faraji, S.; Groenhof, G.; Dreuw, A.
Combined QM/MM investigation on the light-driven electron-induced repair of the (6-4) thymine dimer catalyzed by DNA photolyase
J. Phys. Chem. B
117
10071-10079
2013
Drosophila melanogaster
Asimgil, H.; Kavakli, I.H.
Purification and characterization of five members of photolyase/cryptochrome family from Cyanidioschyzon merolae
Plant Sci.
185-186
190-198
2012
Cyanidioschyzon merolae (M1V623), Cyanidioschyzon merolae, Cyanidioschyzon merolae 10D (M1V623)
Zhang, F.; Scheerer, P.; Oberpichler, I.; Lamparter, T.; Krauss, N.
Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore
Proc. Natl. Acad. Sci. USA
110
7217-7222
2013
Agrobacterium tumefaciens (A9CH39), Agrobacterium tumefaciens, Agrobacterium tumefaciens C58 / ATCC 33970 (A9CH39)
Yamada, D.; Iwata, T.; Yamamoto, J.; Hitomi, K.; Todo, T.; Iwai, S.; Getzoff, E.D.; Kandori, H.
Structural role of two histidines in the (6-4) photolyase reaction
Biophys. Physicobiol.
12
139-144
2015
Xenopus laevis (Q9I910)
Holub, D.; Ma, H.; Krauss, N.; Lamparter, T.; Elstner, M.; Gillet, N.
Functional role of an unusual tyrosine residue in the electron transfer chain of a prokaryotic (6-4) photolyase
Chem. Sci.
9
1259-1272
2018
Agrobacterium fabrum (A9CH39), Agrobacterium fabrum C58 / ATCC 33970 (A9CH39)
Walter, D.; Boswell, M.; Volk de Garcia, S.; Walter, S.; Breitenfeldt, E.; Boswell, W.; Walter, R.
Characterization and differential expression of CPD and 6-4 DNA photolyases in Xiphophorus species and interspecies hybrids
Comp. Biochem. Physiol. C
163
77-85
2014
Xiphophorus couchianus, Xiphophorus maculatus, Xiphophorus maculatus Jp 163 B
von Zadow, A.; Ignatz, E.; Pokorny, R.; Essen, L.O.; Klug, G.
Rhodobacter sphaeroides CryB is a bacterial cryptochrome with (6-4) photolyase activity
FEBS J.
283
4291-4309
2016
Cereibacter sphaeroides (Q3IXP1), Cereibacter sphaeroides, Cereibacter sphaeroides ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158 (Q3IXP1)
Cailliez, F.; Mueller, P.; Firmino, T.; Pernot, P.; de la Lande, A.
Energetics of photoinduced charge migration within the tryptophan tetrad of an animal (6-4) photolyase
J. Am. Chem. Soc.
138
1904-1915
2016
Xenopus laevis (Q9I910), Xenopus laevis
An, M.; Zheng, Z.; Qu, C.; Wang, X.; Chen, H.; Shi, C.; Miao, J.
The first (6-4) photolyase with DNA damage repair activity from the Antarctic microalga Chlamydomonas sp. ICE-L
Mutat. Res.
809
13-19
2018
Chlamydomonas sp. ICE-L (A0A2Z5J5J9)
Zhang, F.; Ma, H.; Bowatte, K.; Kwiatkowski, D.; Mittmann, E.; Qasem, H.; Krauss, N.; Zeng, X.; Ren, Z.; Scheerer, P.; Yang, X.; Lamparter, T.
Crystal structures of bacterial (6-4) photolyase mutants with impaired DNA repair activity
Photochem. Photobiol.
93
304-314
2017
Agrobacterium fabrum (A9CH39), Agrobacterium fabrum, Agrobacterium fabrum C58 / ATCC 33970 (A9CH39)
Yamamoto, J.; Plaza, P.; Brettel, K.
Repair of (6-4) lesions in DNA by (6-4) photolyase 20 years of quest for the photoreaction mechanism
Photochem. Photobiol.
93
51-66
2017
Arabidopsis thaliana (O48652), Drosophila melanogaster (Q0E8P0), Xenopus laevis (Q9I910)
Graf, D.; Wesslowski, J.; Ma, H.; Scheerer, P.; Krauss, N.; Oberpichler, I.; Zhang, F.; Lamparter, T.
Key amino acids in the bacterial (6-4) photolyase PhrB from Agrobacterium fabrum
PLoS ONE
10
e0140955
2015
Agrobacterium fabrum
Guzman-Moreno, J.; Flores-Martinez, A.; Brieba, L.G.; Herrera-Estrella, A.
The Trichoderma reesei Cry1 protein is a member of the cryptochrome/photolyase family with 6-4 photoproduct repair activity
PLoS ONE
9
e100625
2014
Trichoderma reesei (G0RI60), Trichoderma reesei QM6a (G0RI60)
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