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Reference on EC 4.1.1.20 - diaminopimelate decarboxylase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Chatterjee, S.P.; White, P.J.
Activities and regulation of the enzymes of lysine biosynthesis in a lysine-excreting strain of Bacillus megaterium
J. Gen. Microbiol.
128
1073-1081
1982
Priestia megaterium
-
Manually annotated by BRENDA team
Chatterjee, S.P.; Singh, B.K.; Gilvarg, C.
Biosynthesis of lysine in plants: the putative role of meso-diaminopimelate dehydrogenase
Plant Mol. Biol.
26
285-290
1994
Chlamydomonas sp., Glycine max, Nicotiana tabacum, Zea mays
Manually annotated by BRENDA team
Denman, R.F.; Hoare, D.S.; Work, E.
Diaminopimelic acid decarboxylase in pyridoxin-deficient Escherichia coli
Biochim. Biophys. Acta
16
442-443
1955
Escherichia coli
Manually annotated by BRENDA team
Vogel, H.J.; Hirvonen, A.P.
Diaminopimelate decarboxylase
Methods Enzymol.
17B
146-150
1971
Lemna perpusilla, Landoltia punctata
-
Manually annotated by BRENDA team
White, P.J.
Diaminopimelate decarboxylase (Escherichia coli)
Methods Enzymol.
17B
140-145
1971
Escherichia coli
-
Manually annotated by BRENDA team
Rosner, A.
Control of lysine biosynthesis in Bacillis subtilis: inhibition of diaminopimelate decarboxylase by lysine
J. Bacteriol.
121
20-28
1975
Bacillus subtilis, Brevibacterium sp.
Manually annotated by BRENDA team
Mazelis, M.N.; Miflin, B.J.; Prati, H.M.
A chloroplast-localized diaminopimelate decarboxylase in higher plants
FEBS Lett.
64
197-200
1976
Vicia faba
Manually annotated by BRENDA team
Schroder, D.; Wolfel, L.; Schoeter, A.; Mach, F.
Lysinbiosynthese bei Pseudomonas aeruginosa PAO 1:1. Einfluss von Cetyl-trimethyl-ammoniumbromid auf P. aeruginosa PAO 1 bei der Bestimmung der DAP-Decarboxylaseaktivitt
Z. Allg. Mikrobiol.
18
361-364
1978
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Schroeder, D.; Woelfel, L.; Schroeter, A.; Mach, F.
Lysinbiosynthese bei Pseudomonas aeruginosa PAO 1 II. Erste Untersuchungen der DAP-Decarboxylase Lysin-auxotropher Mutanten von P. aeruginosa PAO 1
Z. Allg. Mikrobiol.
18
453-456
1978
Pseudomonas aeruginosa
Manually annotated by BRENDA team
Asada, Y.; Tanizawa, K.; Kawabata, Y.; Misuno, H.; Soda, K.
Purification and properties of meso-alpha,epsilon-diaminopimelate decarboxylase from Bacillus sphaericus
Agric. Biol. Chem.
45
1513-1514
1981
Lysinibacillus sphaericus
-
Manually annotated by BRENDA team
Asada, Y.; Tanizawa, K.; Sawada, S.; Suzuki, T.; Misono, H.; Soda, K.
Stereochemistry of meso-'a,e'-diaminopimelate decarboxylase reaction: the first evidence for pyridoxal 5'phosphate dependent decarboxylation with inversion of configuration
Biochemistry
20
6881-6886
1981
Lysinibacillus sphaericus
Manually annotated by BRENDA team
Dierks-Ventling, C.
Lysine biosynthesis and utilization during seed development of normal and opaque-2 Zea mays L.
Planta
157
233-238
1983
Zea mays
Manually annotated by BRENDA team
Sen, S.K.; Chatterjee, M.; Chatterjee, S.P.; Banerjee, A.K.
Activity of diaminopimelic acid decarboxylase in bacteria producing lysine
Acta Biotechnol.
3
217-220
1983
Arthrobacter globiformis, Corynebacterium glutamicum, Enterococcus faecalis, Micrococcus luteus, Staphylococcus aureus, Kocuria varians
-
Manually annotated by BRENDA team
Bakhiet, N.; Forney, F.W.; Stahly, D.P.; Daniels, L.
Lysine biosynthesis in Methanobacterium thermoautotrophicum is by the diaminopimelic acid pathway
Curr. Microbiol.
10
195-198
1984
Methanothermobacter thermautotrophicus, Methanospirillum hungatei
-
Manually annotated by BRENDA team
Jouanneau, J.; Stragier, P.; Bouvier, J.; Patte, J.C.; Yaniv, M.
Expression in mammalian cells of the diaminopimelic acid decarboxylase of Escherichia coli permits cell growth in lysine-free medium
Eur. J. Biochem.
145
175-178
1985
Escherichia coli
-
Manually annotated by BRENDA team
Kelland, J.C.; Palcic, M.M.; Pickard, M.A.; Vederas, J.C.
Stereochemistry of lysine formation by meso-diaminopimelate decarboxylase from wheat germ: use of 1H-13C NMR shift correlation to detect stereospecific deuterium labeling
Biochemistry
24
3263-3267
1985
Triticum sp.
Manually annotated by BRENDA team
Kelland, J.C.; Arnold, L.D.; Palcic, M.M.; Pickard, M.A.; Vederas, J.C.
Analogs of diaminopimelic acid as inhibitors of meso-diaminopimelate decarboxylase from Bacillus sphaericus and wheat germ
J. Biol. Chem.
261
13216-13223
1986
Lysinibacillus sphaericus, Triticum sp.
Manually annotated by BRENDA team
Yeh, P.; Sicard, A.M.; Sinskey, A.J.
General organization of the genes specifically involved in the diaminopimelate-lysine biosynthetic pathway of Corynebacterium glutamicum
Mol. Gen. Genet.
212
105-111
1988
Corynebacterium glutamicum
Manually annotated by BRENDA team
Styriak, I.; Timashova-Kalcheva, E.O.; Kmet, V.; Maljuta, S.S.
DAP-decarboxylase activity and lysine production by rumen bacteria
Arch. Anim. Nutr.
42
71-77
1992
Fibrobacter succinogenes, Butyrivibrio fibrisolvens, Clostridium spp., Megasphaera elsdenii, Selenomonas ruminantium, Streptococcus equinus
Manually annotated by BRENDA team
White, P.J.
The regulation of diaminopimelate decarboxylase activity in Escherichia coli strain W
J. Gen. Microbiol.
96
51-62
1976
Escherichia coli
Manually annotated by BRENDA team
Mills, D.A.et al.
Cloning and sequence analysis of the meso-diaminopimelate decarboxylase gene from Bacillus methanolicus MGA 3 and comparison to other decarboxylase genes
Appl. Environ. Microbiol.
59
2927-2937
1993
Bacillus methanolicus
Manually annotated by BRENDA team
Momany, C.; Levdikov, V.; Blagova, L.; Crews, K.
Crystallization of diaminopimelate decarboxylase from Escherichia coli, a stereospecific D-amino-acid decarboxylase
Acta Crystallogr. Sect. D
58
549-552
2002
Escherichia coli
Manually annotated by BRENDA team
Gokulan, K.; Rupp, B.; Pavelka, M.S., Jr.; Jacobs, W.R., Jr.; Sacchettini, J.C.
Crystal structure of Mycobacterium tuberculosis diaminopimelate decarboxylase, an essential enzyme in bacterial lysine biosynthesis
J. Biol. Chem.
278
18588-18596
2003
Mycobacterium tuberculosis (P9WIU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WIU7)
Manually annotated by BRENDA team
Ray, S.S.; Bonanno, J.B.; Rajashankar, K.R.; Pinho, M.G.; He, G.; De Lencastre, H.; Tomasz, A.; Burley, S.K.
Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor
Structure
10
1499-1508
2002
Methanocaldococcus jannaschii
Manually annotated by BRENDA team
Kefala, G.; Perry, L.J.; Weiss, M.S.
Cloning, expression, purification, crystallization and preliminary x-ray diffraction analysis of LysA (Rv1293) from Mycobacterium tuberculosis
Acta Crystallogr. Sect. F
F61
782-784
2005
Mycobacterium tuberculosis
Manually annotated by BRENDA team
Gunji, Y.; Tsujimoto, N.; Shimaoka, M.; Ogawa-Miyata, Y.; Sugimoto, S.; Yasueda, H.
Characterization of the L-lysine biosynthetic pathway in the obligate methylotroph Methylophilus methylotrophus
Biosci. Biotechnol. Biochem.
68
1449-1460
2004
Methylophilus methylotrophus
Manually annotated by BRENDA team
Kim, J.
Diaminopimelate decarboxylase from Arabidopsis contains motifs for pyridoxal-5'-phosphate and substrate
Asian J. Plant Sci.
5
260-265
2006
Arabidopsis thaliana (Q949X7), Arabidopsis thaliana (Q94A94)
-
Manually annotated by BRENDA team
Kim, J.; Lee, S.
Characterization of a gene encoding diaminopimelate decarboxylase from rice
Integr. Biosci.
10
197-201
2006
Oryza sativa (Q6ZG77)
-
Manually annotated by BRENDA team
Hu, T.; Wu, D.; Chen, J.; Ding, J.; Jiang, H.; Shen, X.
The catalytic intermediate stabilized by a "down" active site loop for diaminopimelate decarboxylase from Helicobacter pylori. Enzymatic characterization with crystal structure analysis
J. Biol. Chem.
283
21284-21293
2008
Helicobacter pylori (P56129), Helicobacter pylori
Manually annotated by BRENDA team
Weyand, S.; Kefala, G.; Svergun, D.I.; Weiss, M.S.
The three-dimensional structure of diaminopimelate decarboxylase from Mycobacterium tuberculosis reveals a tetrameric enzyme organisation
J. Struct. Funct. Genomics
10
209-217
2009
Mycobacterium tuberculosis (P9WIU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WIU7)
Manually annotated by BRENDA team
Fogle, E.J.; Toney, M.D.
Analysis of catalytic determinants of diaminopimelate and ornithine decarboxylases using alternate substrates
Biochim. Biophys. Acta
1814
1113-1119
2011
Mycobacterium tuberculosis, Mycobacterium tuberculosis (P9WIU7), Mycobacterium tuberculosis H37Rv (P9WIU7)
Manually annotated by BRENDA team
Cheraghi, S.; Akbarzade, A.; Farhangi, A.; Chiani, M.; Saffari, Z.; Ghassemi, S.; Rastegari, H.; Mehrabi, M.
Improved production of L-lysine by over-expression of meso-diaminopimelate decarboxylase enzyme of Corynebacterium glutamicum in Escherichia coli
Pak. J. Biol. Sci.
13
504-508
2010
Corynebacterium glutamicum, Corynebacterium glutamicum ATC21799
Manually annotated by BRENDA team
Oliver, M.R.; Crowther, J.M.; Leeman, M.M.; Kessans, S.A.; North, R.A.; Donovan, K.A.; Griffin, M.D.; Suzuki, H.; Hudson, A.O.; Kasanmascheff, M.; Dobson, R.C.
The purification, crystallization and preliminary X-ray diffraction analysis of two isoforms of meso-diaminopimelate decarboxylase from Arabidopsis thaliana
Acta Crystallogr. Sect. F
70
663-668
2014
Arabidopsis thaliana (Q949X7), Arabidopsis thaliana (Q94A94), Arabidopsis thaliana
Manually annotated by BRENDA team
Son, H.F.; Kim, K.J.
Structural basis for substrate specificity of meso-diaminopimelic acid decarboxylase from Corynebacterium glutamicum
Biochem. Biophys. Res. Commun.
495
1815-1821
2018
Corynebacterium glutamicum (P09890), Corynebacterium glutamicum, Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 (P09890)
Manually annotated by BRENDA team
Peverelli, M.G.; Perugini, M.A.
An optimized coupled assay for quantifying diaminopimelate decarboxylase activity
Biochimie
115
78-85
2015
no activity in Homo sapiens, Bacillus anthracis (A0A1S0QVH4), Bacillus anthracis, Escherichia coli (P00861), Escherichia coli, Mycobacterium tuberculosis (P9WIU7), Mycobacterium tuberculosis, Bacillus anthracis Sterne (A0A1S0QVH4), Mycobacterium tuberculosis ATCC 25618 / H37Rv (P9WIU7), Escherichia coli K-12 / MG1655 (P00861)
Manually annotated by BRENDA team
Peverelli, M.G.; Soares da Costa, T.P.; Kirby, N.; Perugini, M.A.
Dimerization of bacterial diaminopimelate decarboxylase is essential for catalysis
J. Biol. Chem.
291
9785-9795
2016
Bacillus anthracis (A0A1S0QVH4), Bacillus anthracis, Escherichia coli (P00861), Escherichia coli, Mycobacterium tuberculosis (P9WIU7), Mycobacterium tuberculosis, Vibrio cholerae serotype O1 (Q9KVL7), Bacillus anthracis Sterne (A0A1S0QVH4), Mycobacterium tuberculosis ATCC 25618 / H37Rv (P9WIU7), Vibrio cholerae serotype O1 ATCC 39315 / El Tor Inaba N16961 (Q9KVL7), Escherichia coli K-12 / MG1655 (P00861)
Manually annotated by BRENDA team