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Reference on EC 3.1.21.7 - deoxyribonuclease V

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Nyaga, S.G.; Dodson, M.L.; Lloyd, R.S.
Role of specific amino acid residues in T4 endonuclease V that alter nontarget DNA binding
Biochemistry
36
4080-4088
1997
Tequatrovirus T4
Manually annotated by BRENDA team
McCullough, A.K.; Dodson, M.L.; Schrer, O.D.; Lloyd, R.S.
The role pf base flipping in damge recognition and catalysis by nT4 endonuclease V
J. Biol. Chem.
272
27210-27217
1997
Tequatrovirus T4
Manually annotated by BRENDA team
Vassylyev, D.G.; Kashiwagi, T.; Mikami, Y.; Ariyoshi, M.; Iwai, S.; Ohtsuka, E.; Morikawa, K.
Atomic model of a pyrmidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition
Cell
83
773-782
1995
Tequatrovirus T4
Manually annotated by BRENDA team
McCullough, A.K.; Schrer, O.; Verdine, G.L.; Lloyd, R.S.
Structural determinants for specific recognition by T4 endonuclease V
J. Biol. Chem.
271
32147-32152
1996
Tequatrovirus T4
Manually annotated by BRENDA team
Yao, M.; Kow, Y.W.
Further characterization of Escherichia coli endonuclease V. Mechanism of recognition for deoxyinosine, deoxyuridine, and base mismatches in DNA
J. Biol. Chem.
272
30774-30779
1997
Escherichia coli
Manually annotated by BRENDA team
Latham, K.A.; Rajendran, S.; Carmical, J.R.; Lee, J.C.; Lloyd, R.S.
T4 endonuclease V exists in solution as a monomer and binds to target sites as a monomer
Biochim. Biophys. Acta
1292
324-334
1996
Tequatrovirus T4
Manually annotated by BRENDA team
Latham, K.A.; Lloyd, R.S.
delta-Eliminiation by T4 endonuclease V at a thymine dimer site requires a secondary binding event and amino acid Glu-23
Biochemistry
34
8796-8803
1995
Tequatrovirus T4
Manually annotated by BRENDA team
Dodson, M.L.; Schrockk III, R.D.; Lloyd, R.S.
Evidence for an imino intermediate in the T4 endonuclease V reaction
Biochemistry
32
8284-8290
1993
Tequatrovirus T4
Manually annotated by BRENDA team
Sibghat-Ullah; Sancar, A.
In vitro characterization of repair synthesis initiated by T4 endonuclease V on a synthetic DNA substrate
Indian J. Biochem. Biophys.
29
227-230
1992
Tequatrovirus T4
Manually annotated by BRENDA team
Nickell, C.; Lloyd, R.S.
Mutations in endonuclease V that affect both protein-protein association and target site location
Biochemistry
30
8638-8648
1991
Tequatrovirus T4
Manually annotated by BRENDA team
Prince, M.A.; Friedman, B.; Gruskin, E.A.; Schrock III, R.D.; Lloyd, R.S.
Selective metal binding to Cys-78 within endonuclease V cause an inhibition of catalytic aactivities without altering nontarget and target DNA binding
J. Biol. Chem.
266
10686-10693
1991
Tequatrovirus T4
Manually annotated by BRENDA team
Morikawa, K.; Matsumoto, O.; Tsujimoto, M.; Katayanagi, K.; Ariyoshi, M.; Doi, T.; Ikehara, M.; Inaoka, T.; Ohtsuka, E.
X-ray structure of T4 endonuclease V: An excision repair enzyme specific for a pyrimidine dimer
Science
256
523-526
1992
Tequatrovirus T4
Manually annotated by BRENDA team
Kim, J.; Linn, S.
The mechanism of action of E. coli endonuclease III and T4 UV endonuclease (endonuclease V) at AP sites
Nucleic Acids Res.
16
1135-1141
1988
Tequatrovirus T4
Manually annotated by BRENDA team
Mosbaugh, D.W.; Linn, S.
Excision repair and DNA synthesis with a combination of HeLa DNA polymerase beta and DNase V
J. Biol. Chem.
258
108-118
1983
Homo sapiens
Manually annotated by BRENDA team
Demple, B.; Linn, S.
On the recognition and cleavage mechanism of Escherichia coli endodeoxyribonuclease V, a possible DNA repair enzyme
J. Biol. Chem.
257
2848-2855
1982
Escherichia coli
Manually annotated by BRENDA team
Demple, B.; Gates III, F.T.; Linn, S.
Purification and properties of Escherichia coli endodeoxyribonuclease V
Methods Enzymol.
65
224-231
1980
Escherichia coli
Manually annotated by BRENDA team
Wang, E.G.; Furth, J.J.
Mammalian endonuclease, DNase V. Purification and properties of enzyme of calf thymus
J. Biol. Chem.
252
116-124
1977
Bos taurus
Manually annotated by BRENDA team
Gates III, F.T.; Linn, S.
Endonuclease from Escherichia coli that acts specifically upon duplex DNA damaged by ultraviolet light, osmium tetroxide, acid, or x-rays
J. Biol. Chem.
252
2802-2807
1977
Escherichia coli
Manually annotated by BRENDA team
Kanugula, S.; Pauly, G.T.; Moschel, R.C.; Pegg, A.E.
A bifunctional DNA repair protein from Ferroplasma acidarmanus exhibits O6-alkylguanine-DNA alkyltransferase and endonuclease V activities
Proc. Natl. Acad. Sci. USA
102
3617-3622
2005
Ferroplasma acidarmanus
Manually annotated by BRENDA team
Feng, H.; Dong, L.; Klutz, A.M.; Aghaebrahim, N.; Cao, W.
Defining amino acid residues involved in DNA-protein interactions and revelation of 3'-exonuclease activity in endonuclease V
Biochemistry
44
11486-11495
2005
Thermotoga maritima
Manually annotated by BRENDA team
Feng, H.; Klutz, A.; Cao, W.
Active site plasticity of endonuclease V from Salmonella typhimurium
Biochemistry
44
675-683
2005
Salmonella enterica subsp. enterica serovar Typhimurium
Manually annotated by BRENDA team
Miyazaki, K.
Random DNA fragmentation with enonuclease V: application to DNA shuffling
Nucleic Acids Res.
30
e139
2002
Escherichia coli
Manually annotated by BRENDA team
Hitchcock, T.M.; Gao, H.; Cao, W.
Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V
Nucleic Acids Res.
32
4071-4080
2004
Salmonella sp.
Manually annotated by BRENDA team
Doi, Y.; Katafuchi, A.; Fujiwara, Y.; Hitomi, K.; Tainer, J.A.; Ide, H.; Iwai, S.
Synthesis and characterization of oligonucleotides containing 2'-fluorinated thymidine glycol as inhibitors of the endonuclease III reaction
Nucleic Acids Res.
34
1540-1551
2006
Tequatrovirus T4
Manually annotated by BRENDA team
Turner, D.J.; Pingle, M.R.; Barany, F.
Harnessing asymmetrical substrate recognition by thermostable EndoV to achieve balanced linear amplification in multiplexed SNP typing
Biochem. Cell Biol.
84
232-242
2006
Thermotoga maritima
Manually annotated by BRENDA team
Feng, H.; Dong, L.; Cao, W.
Catalytic Mechanism of Endonuclease V: A Catalytic and Regulatory Two-Metal Model
Biochemistry
45
10251-10259
2006
Thermotoga maritima (Q9X2H9)
Manually annotated by BRENDA team
Lin, J.; Gao, H.; Schallhorn, K.A.; Harris, R.M.; Cao, W.; Ke, P.C.
Lesion Recognition and Cleavage by Endonuclease V: A Single-Molecule Study
Biochemistry
46
7132-7137
2007
Thermotoga maritima (Q9X2H9)
Manually annotated by BRENDA team
Wright, T.I.; Spencer, J.M.; Flowers, F.P.
Chemoprevention of nonmelanoma skin cancer
J. Am. Acad. Dermatol.
54; 933-46
quiz 947-50
2006
Tequatrovirus T4
Manually annotated by BRENDA team
Lhiaubet-Vallet, V.; Cuquerella, M.C.; Castell, J.V.; Bosca, F.; Miranda, M.A.
Triplet excited fluoroquinolones as mediators for thymine cyclobutane dimer formation in DNA
J. Phys. Chem. B
111
7409-7414
2007
Tequatrovirus T4
Manually annotated by BRENDA team
Gao, H.; Huang, J.; Barany, F.; Cao, W.
Switching base preferences of mismatch cleavage in endonuclease V: an improved method for scanning point mutations
Nucleic Acids Res.
35
e2/1-e2/6
2007
Thermotoga maritima (Q9X2H9)
-
Manually annotated by BRENDA team
Jiang, Y.; Rabbi, M.; Kim, M.; Ke, C.; Lee, W.; Clark, R.L.; Mieczkowski, P.A.; Marszalek, P.E.
UVA generates pyrimidine dimers in DNA directly
Biophys. J.
96
1151-1158
2009
Tequatrovirus T4
Manually annotated by BRENDA team
Dong, K.K.; Damaghi, N.; Picart, S.D.; Markova, N.G.; Obayashi, K.; Okano, Y.; Masaki, H.; Grether-Beck, S.; Krutmann, J.; Smiles, K.A.; Yarosh, D.B.
UV-induced DNA damage initiates release of MMP-1 in human skin
Exp. Dermatol.
17
1037-1044
2008
Tequatrovirus T4
Manually annotated by BRENDA team
Cafardi, J.A.; Elmets, C.A.
T4 endonuclease V: review and application to dermatology
Expert. Opin. Biol. Ther.
8
829-838
2008
Tequatrovirus T4
Manually annotated by BRENDA team
Majorek, K.A.; Bujnicki, J.M.
Modeling of Escherichia coli Endonuclease V structure in complex with DNA
J. Mol. Model.
15
173-182
2009
Escherichia coli
Manually annotated by BRENDA team
Dalhus, B.; Arvai, A.S.; Rosnes, I.; Olsen, O.E.; Backe, P.H.; Alseth, I.; Gao, H.; Cao, W.; Tainer, J.A.; Bjoras, M.
Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair
Nat. Struct. Mol. Biol.
16
138-143
2009
Thermotoga maritima (Q9X2H9)
Manually annotated by BRENDA team
Lee, C.; Yang, Y.; Goodman, S.; Yu, Y.; Lin, S.; Kao, J.; Tsai, K.; Fang, W.
Endonuclease V-mediated deoxyinosine excision repair in vitro
DNA Repair
9
1073-1079
2010
Escherichia coli
Manually annotated by BRENDA team
Mi, R.; Abole, A.; Cao, W.
Dissecting endonuclease and exonuclease activities in endonuclease V from Thermotoga maritima
Nucleic Acids Res.
39
536-544
2011
Thermotoga maritima
Manually annotated by BRENDA team
Kiyonari, S.; Egashira, Y.; Ishino, S.; Ishino, Y.
Biochemical characterization of endonuclease V from the hyperthermophilic archaeon, Pyrococcus furiosus
J. Biochem.
155
325-333
2014
Pyrococcus furiosus (Q8U263), Pyrococcus furiosus
Manually annotated by BRENDA team
Zhang, Z.; Hao, Z.; Wang, Z.; Li, Q.; Xie, W.
Structure of human endonuclease V as an inosine-specific ribonuclease
Acta Crystallogr. Sect. D
70
2286-2294
2014
Homo sapiens (Q8N8Q3)
Manually annotated by BRENDA team
Baumann, T.; Arndt, K.; Mueller, K.
Directional cloning of DNA fragments using deoxyinosine-containing oligonucleotides and endonuclease V
BMC Biotechnol.
13
81
2013
Escherichia coli, Thermotoga maritima
Manually annotated by BRENDA team
Vik, E.S.; Nawaz, M.S.; Strom Andersen, P.; Fladeby, C.; Bjoras, M.; Dalhus, B.; Alseth, I.
Endonuclease V cleaves at inosines in RNA
Nat. Commun.
4
2271
2013
Escherichia coli, Homo sapiens (Q8N8Q3)
Manually annotated by BRENDA team
Fladeby, C.; Vik, E.S.; Laerdahl, J.K.; Gran Neurauter, C.; Heggelund, J.E.; Thorgaard, E.; Strom-Andersen, P.; Bjoras, M.; Dalhus, B.; Alseth, I.
The human homolog of Escherichia coli endonuclease V is a nucleolar protein with affinity for branched DNA structures
PLoS ONE
7
e47466
2012
Homo sapiens (Q8N8Q3)
Manually annotated by BRENDA team
Rosnes, I.; Rowe, A.D.; Vik, E.S.; Forstrom, R.J.; Alseth, I.; Bjoras, M.; Dalhus, B.
Structural basis of DNA loop recognition by endonuclease V
Structure
21
257-265
2013
Thermotoga maritima (Q9X2H9)
Manually annotated by BRENDA team
Ishino, S.; Makita, N.; Shiraishi, M.; Yamagami, T.; Ishino, Y.
EndoQ and EndoV work individually for damaged DNA base repair in Pyrococcus furiosus
Biochimie
118
264-269
2015
Pyrococcus furiosus (Q8U263)
Manually annotated by BRENDA team
Wang, W.; Peng, F.; Li, W.; Huang, Y.; Nie, Z.; Yao, S.
A dual enzymatic amplified strategy for the detection of endonuclease v activity
Anal. Methods
7
8453-8458
2015
Escherichia coli
-
Manually annotated by BRENDA team
Su, K.Y.; Lin, L.I.; Goodman, S.D.; Yen, R.S.; Wu, C.Y.; Chang, W.C.; Yang, Y.C.; Cheng, W.C.; Fang, W.H.
DNA polymerase I proofreading exonuclease activity is required for endonuclease V repair pathway both in vitro and in vivo
DNA Repair
64
59-67
2018
Escherichia coli (P68739), Escherichia coli, Escherichia coli K12 (P68739)
Manually annotated by BRENDA team
Kim, J.; Tohashi, K.; Iwai, S.; Kuraoka, I.
Inosine-specific ribonuclease activity of natural variants of human endonuclease V
FEBS Lett.
590
4354-4360
2016
Homo sapiens (Q8N8Q3)
-
Manually annotated by BRENDA team
Wang, Y.; Zhang, L.; Zhu, X.; Li, Y.; Shi, H.; Oger, P.; Yang, Z.
Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5
Int. J. Biol. Macromol.
117
17-24
2018
Thermococcus barophilus (A0A0S1X9V3), Thermococcus barophilus, Thermococcus barophilus Ch5 (A0A0S1X9V3)
Manually annotated by BRENDA team
Nawaz, M.S.; Vik, E.S.; Berges, N.; Fladeby, C.; Bjoras, M.; Dalhus, B.; Alseth, I.
Regulation of human endonuclease V activity and relocalization to cytoplasmic stress granules
J. Biol. Chem.
291
21786-21801
2016
Homo sapiens (Q8N8Q3)
Manually annotated by BRENDA team
Ahmadi, A.; Rosnes, I.; Blicher, P.; Diekmann, R.; Schuettpelz, M.; Glette, K.; Torresen, J.; Bjoras, M.; Dalhus, B.; Rowe, A.D.
Breaking the speed limit with multimode fast scanning of DNA by endonuclease V
Nat. Commun.
9
5381
2018
Thermotoga maritima (Q9X2H9), Thermotoga maritima ATCC 43589 (Q9X2H9)
Manually annotated by BRENDA team
Zhang, Z.; Jia, Q.; Zhou, C.; Xie, W.
Crystal structure of E. coli endonuclease V, an essential enzyme for deamination repair
Sci. Rep.
5
12754
2015
Escherichia coli (B7MIY4), Escherichia coli O45:K1/S88/ExPEC (B7MIY4), Escherichia coli O45:K1/S88 (B7MIY4)
Manually annotated by BRENDA team
Nawaz, M.S.; Vik, E.S.; Ronander, M.E.; Solvoll, A.M.; Blicher, P.; Bjoras, M.; Alseth, I.; Dalhus, B.
Crystal structure and MD simulation of mouse EndoV reveal wedge motif plasticity in this inosine-specific endonuclease
Sci. Rep.
6
24979
2016
Mus musculus (Q8C9A2)
Manually annotated by BRENDA team
Garcia-Caballero, D.; Perez-Moreno, G.; Estevez, A.M.; Ruiz-Perez, L.M.; Vidal, A.E.; Gonzalez-Pacanowska, D.
Insights into the role of endonuclease V in RNA metabolism in Trypanosoma brucei
Sci. Rep.
7
8505
2017
Trypanosoma brucei (Q38AS1), Trypanosoma brucei brucei (Q38AS1), Trypanosoma brucei 927 (Q38AS1), Trypanosoma brucei brucei 927/4 GUTat10.1 (Q38AS1)
Manually annotated by BRENDA team