Reference on EC 3.1.11.2 - exodeoxyribonuclease III

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Bassett, C.L.; Kushner, S.R.
Exonucleases I, III, and V are required for stability of ColE1-related plasmids in Escherichia coli
J. Bacteriol.
157
661-664
1984
Escherichia coli
Manually annotated by BRENDA team
Know, Y.W.
Mechanism of action of Escherichia coli exonuclease III
Biochemistry
28
3280-3287
1989
Escherichia coli
Manually annotated by BRENDA team
Hagensee, M.E.; Moses, R.E.
Multiple pathways for repair of hydrogen peroxide-induced DNA damage in Escherichia coli
J. Bacteriol.
171
991-995
1989
Escherichia coli
Manually annotated by BRENDA team
Demple, B.; Johnson, A.; Fung, D.
Exonuclease III and endonuclease IV remove 3'-blocks from DNA synthesis primers in H2O2-damaged Escherichia coli
Proc. Natl. Acad. Sci. USA
83
7731-7735
1986
Escherichia coli
Manually annotated by BRENDA team
Kow, Y.W.; Wallace, S.S.
Exonuclease III recognizes urea residues in oxidized DNA
Proc. Natl. Acad. Sci. USA
82
8354-8358
1985
Escherichia coli
Manually annotated by BRENDA team
Linxweiler, W.; Hoerz, W.
Sequence specificity of exonuclease III from E. coli
Nucleic Acids Res.
10
4845-4859
1982
Escherichia coli
Manually annotated by BRENDA team
Taylor, A.F.; Weiss, B.
Role of exonuclease III in the base excision repair of uracil-containing DNA
J. Bacteriol.
151
351-357
1982
Escherichia coli
Manually annotated by BRENDA team
Royer-Pokora, B.; Gordon, L.K.; Haseltine, W.A.
Use of exonuclease III to determine the site of stable lesions in defined sequences of DNA: the cyclobutane pyrimidine dimer and cis and trans dichlorodiamine platinum II examples
Nucleic Acids Res.
9
4595-4609
1981
Escherichia coli
Manually annotated by BRENDA team
Rogers, S.G.; Weiss, B.
Cloning of the exonuclease III gene of Escherichia coli
Gene
11
187-195
1980
Escherichia coli
Manually annotated by BRENDA team
Roychoudhury, R.; Wu, R.
Novel properties of Escherichia coli exonuclease III
J. Biol. Chem.
252
4786-4789
1977
Escherichia coli
Manually annotated by BRENDA team
Kirtikar, D.M.; Cathcart, G.R.; Goldthwait, D.A.
Endonuclease II, apurinic acid endonuclease, and exonuclease III
Proc. Natl. Acad. Sci. USA
73
4324-4328
1976
Escherichia coli
Manually annotated by BRENDA team
Richardson, C.C.
Exonuclease III from Escherichia coli
Procedures in Nucleic Acid Research (Cantoni, G. L. , Davies, D. R. , eds. )
212-223
1966
Escherichia coli, Escherichia coli B / ATCC 11303
-
Manually annotated by BRENDA team
Richardson, C.C.; Lehman, I.R.; Kornberg, A.
A deoxyribonucleic acid phosphatase-exonuclease from Escherichia coli
J. Biol. Chem.
239
251-258
1964
Escherichia coli
Manually annotated by BRENDA team
Donelson, J.E.; Wu, R.
Nucleotide sequence analysis of deoxyribonucleic acid. VII. Characterization of Escherichia coli exonuclease III activity for possible use in terminal nucleotide sequence analysis of duplex deoxyribonucleic acid
J. Biol. Chem.
247
4661-4668
1972
Escherichia coli
Manually annotated by BRENDA team
Ostermeier, M.; Nixon, A.E.; Benkovic, S.J.
Incremental truncation as a strategy in the engineering of novel biocatalysts
Bioorg. Med. Chem.
7
2139-2144
1999
Escherichia coli
Manually annotated by BRENDA team
Fueki, T.; Yamaguchi, K.
Exonuclease III promotes in vitro binding of the replication initiator protein of plasmid pSC101 to the repeated sequences in the ori region
Biochim. Biophys. Acta
1089
325-330
1991
Escherichia coli
Manually annotated by BRENDA team
Kuo, C.F.; Mol, C.D.; Thayer, M.M.; Cunningham, R.P.; Tainer, J.A.
Structure and function of the DNA repair enzyme exonuclease III from E. coli
Ann. N. Y. Acad. Sci.
726
223-235
1994
Escherichia coli
Manually annotated by BRENDA team
Epe, B.; Pflaum, M.; H§ring, M.; Hegler, J.; Rudiger, H.
Use of repair endonucleases to characterize DNA damage induced by reactive oxygen species in cellular and cell-free system
Toxicol. Lett.
67
57-72
1993
Escherichia coli
Manually annotated by BRENDA team
Scott-Taylor, T.H.; Ahluwalia, G.; Hammond, G.W.
Restriction analysis of the prototype strain of enteric adenovirus type 41 using exonuclease III
J. Virol. Methods
38
25-38
1992
Escherichia coli
Manually annotated by BRENDA team
Pierce, J.R.; Nazimiec, M.; Tang, M.s.
Comparison of sequence preference of tomaymycin- and anthramycin-DNA bonding by exonuclease III and lambda exonuclease digestion and UvrABC nuclease incision analysis
Biochemistry
32
7069-7078
1993
Escherichia coli
Manually annotated by BRENDA team
Mol, C.D.; Kuo, C.F.; Thayer, M.M.; Cunningham, R.P.; Tainer, J.A.
Structure and function of the multifunctional DNA-repair enzyme exonuclease III
Nature
374
381-386
1995
Escherichia coli
Manually annotated by BRENDA team
Hoheisel, J.D.
On the activities of Escherichia coli exonuclease III
Anal. Biochem.
209
238-246
1993
Escherichia coli
Manually annotated by BRENDA team
Gaubatz, J.W.; Flores, S.C.
Purification of eucaryotic extrachromosomal circular DNAs using exonuclease III
Anal. Biochem.
184
305-310
1990
Escherichia coli
Manually annotated by BRENDA team
Okano, K.; Kambara, H.
DNA probe assay based on exonuclease III digestion of probes hybridized on target DNA
Anal. Biochem.
228
101-108
1995
Escherichia coli
Manually annotated by BRENDA team
Kuo, C.F.; McRee, D.E.; Cunningham, R.P.; Tainer, J.A.
Purification, crystallization and space group determination of DNA repair enzyme exonuclease III from E. coli
J. Mol. Biol.
229
239-242
1993
Escherichia coli
Manually annotated by BRENDA team
Brakmann, S.; Lobermann, S.
A further step towards single-molecule sequencing: Escherichia coli Exonuclease III degrades DNA that is fluorescently labeled at each base pair
Angew. Chem.
41
3215-3217
2002
Escherichia coli
Manually annotated by BRENDA team
Sun, W.; Nicholson, A.W.
Mechanism of action of Escherichia coli ribonuclease III. Stringent chemical requirement for the glutamic acid 117 side chain and Mn2+ rescue of the Glu117Asp mutant
Biochemistry
40
5102-5110
2001
Escherichia coli
Manually annotated by BRENDA team
Doddridge, Z.A.; Bertram, R.D.; Hayes, C.J.; Soultanas, P.
Effects of vinylphosphonate internucleotide linkages on the cleavage specificity of exonuclease III and on the activity of DNA polymerase I
Biochemistry
42
3239-3246
2003
Escherichia coli
Manually annotated by BRENDA team
Iwasaki, Y.; Miyaike, J.; Takahashi, A.; Tsuji, T.
Exonuclease III-generated series of homologous competitor DNA fragments for competitive PCR
Biotechniques
29
228-230
2000
Escherichia coli
Manually annotated by BRENDA team
Shokolenko, I.N.; Alexeyev, M.F.; Robertson, F.M.; LeDoux, S.P.; Wilson, G.L.
The expression of Exonuclease III from E. coli in mitochondria of breast cancer cells diminishes mitochondrial DNA repair capacity and cell survival after oxidative stress
DNA Repair
2
471-482
2003
Escherichia coli
Manually annotated by BRENDA team
Fromenty, B.; Demeilliers, C.; Mansouri, A.; Pessayre, D.
Escherichia coli exonuclease III enhances long PCR amplification of damaged DNA templates
Nucleic Acids Res.
28; e50
ii-vii
2000
Escherichia coli
-
Manually annotated by BRENDA team
Slaitas, A.; Ander, C.; Foldes-Papp, Z.; Rigler, R.; Yeheskiely, E.
Suppression of exonucleolytic degradation of double-stranded DNA and inhibition of exonuclease III by PNA
Nucleosides Nucleotides Nucleic Acids
22
1603-1605
2003
Escherichia coli
Manually annotated by BRENDA team
Lee, H.J.; Li, Y.; Wark, A.W.; Corn, R.M.
Enzymatically amplified surface plasmon resonance imaging detection of DNA by exonuclease III digestion of DNA microarrays
Anal. Chem.
77
5096-5100
2005
Escherichia coli
Manually annotated by BRENDA team
Greenberg, M.M.; Weledji, Y.N.; Kim, J.; Bales, B.C.
Repair of oxidized abasic sites by exonuclease III, endonuclease IV, and endonuclease III
Biochemistry
43
8178-8183
2004
Escherichia coli
Manually annotated by BRENDA team
Shatilla, A.; Ishchenko, A.A.; Saparbaev, M.; Ramotar, D.
Characterization of Caenorhabditis elegans exonuclease-3 and evidence that a Mg2+-dependent variant exhibits a distinct mode of action on damaged DNA
Biochemistry
44
12835-12848
2005
Caenorhabditis elegans
Manually annotated by BRENDA team
Hornback, M.L.; Roop, R.M.2nd.
The Brucella abortus xthA-1 gene product participates in base excision repair and resistance to oxidative killing but is not required for wild-type virulence in the mouse model
J. Bacteriol.
188
1295-1300
2006
Brucella abortus
Manually annotated by BRENDA team
Souza, L.L.; Eduardo, I.R.; Padula, M.; Leitao, A.C.
Endonuclease IV and exonuclease III are involved in the repair and mutagenesis of DNA lesions induced by UVB in Escherichia coli
Mutagenesis
21
125-130
2006
Escherichia coli
Manually annotated by BRENDA team
Kaneda, K.; Sekiguchi, J.; Shida, T.
Role of the tryptophan residue in the vicinity of the catalytic center of exonuclease III family AP endonucleases: AP site recognition mechanism
Nucleic Acids Res.
34
1552-1563
2006
Escherichia coli
Manually annotated by BRENDA team
Burkovics, P.; Szukacsov, V.; Unk, I.; Haracska, L.
Human Ape2 protein has a 3-5 exonuclease activity that acts preferentially on mismatched base pairs
Nucleic Acids Res.
34
2508-2515
2006
Homo sapiens
Manually annotated by BRENDA team
Yang, Z.; Sismour, A.M.; Benner, S.A.
Nucleoside alpha-thiotriphosphates, polymerases and the exonuclease III analysis of oligonucleotides containing phosphorothioate linkages
Nucleic Acids Res.
35
3118-3127
2007
Escherichia coli
Manually annotated by BRENDA team
Ehrlich, N.; Anhalt, K.; Hübner, C.; Brakmann, S.
Exonuclease III action on microarrays: Observation of DNA degradation by fluorescence correlation spectroscopy
Anal. Biochem.
399
251-256
2010
Escherichia coli
Manually annotated by BRENDA team
Zuo, X.; Xia, F.; Xiao, Y.; Plaxco, K.
Sensitive and selective amplified fluorescence DNA detection based on exonuclease III-aided target recycling
J. Am. Chem. Soc.
132
1816-1818
2010
Escherichia coli
Manually annotated by BRENDA team
Guehrs, K.H.; Groth, M.; Grosse, F.
A label-free assay of exonuclease activity using a pyrosequencing technique
Anal. Biochem.
405
11-18
2010
Escherichia coli
Manually annotated by BRENDA team
Cui, L.; Ke, G.; Zhang, W.Y.; Yang, C.J.
A universal platform for sensitive and selective colorimetric DNA detection based on Exo III assisted signal amplification
Biosens. Bioelectron.
26
2796-2800
2011
Escherichia coli
Manually annotated by BRENDA team
Yang, C.J.; Cui, L.; Huang, J.; Yan, L.; Lin, X.; Wang, C.; Zhang, W.Y.; Kang, H.
Linear molecular beacons for highly sensitive bioanalysis based on cyclic Exo III enzymatic amplification
Biosens. Bioelectron.
27
119-124
2011
Escherichia coli
Manually annotated by BRENDA team
Wu, D.; Yin, B.; Ye, B.
A label-free electrochemical DNA sensor based on exonuclease III-aided target recycling strategy for sequence-specific detection of femtomolar DNA
Biosens. Bioelectron.
28
232-238
2011
Escherichia coli
Manually annotated by BRENDA team
Zhang, M.; Guan, Y.M.; Ye, B.C.
Ultrasensitive fluorescence polarization DNA detection by target assisted exonuclease III-catalyzed signal amplification
Chem. Commun. (Camb. )
47
3478-3480
2011
Escherichia coli
Manually annotated by BRENDA team
Pisani, F.M.; Manco, G.; Carratore, V.; Rossi, M.
Domain organization and DNA-induced conformational changes of an archaeal family B DNA polymerase
Biochemistry
35
9158-9166
1996
Saccharolobus solfataricus
Manually annotated by BRENDA team
Pisani, F.M., Rossi M.
Evidence that an archaeal alpha-like DNA polymerase has a modular organization of its associated catalytic activities
J. Biol. Chem.
269
7887-7992
1994
Saccharolobus solfataricus
Manually annotated by BRENDA team
Hu, P.; Zhu, C.; Jin, L.; Dong, S.
An ultrasensitive fluorescent aptasensor for adenosine detection based on exonuclease III assisted signal amplification
Biosens. Bioelectron.
34
83-87
2012
Escherichia coli
Manually annotated by BRENDA team
Nikitina, T.; Wang, D.; Gomberg, M.; Grigoryev, S.A.; Zhurkin, V.B.
Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping
J. Mol. Biol.
425
1946-1960
2013
Escherichia coli
Manually annotated by BRENDA team
Liu, Q.; Lian, J.; Liu, M.; Jin, Y.; Li, B.
A simple turn-on fluorescent biosensor for sensitive detection of exonuclease III activity through photoinduced electron transfer and self-hybridization of a DNA probe
Anal. Methods
10
2257-2262
2018
Homo sapiens (Q9NSU2)
-
Manually annotated by BRENDA team
Khanam, T.; Shukla, A.; Rai, N.; Ramachandran, R.
Critical determinants for substrate recognition and catalysis in the M. tuberculosis class II AP-endonuclease/3'-5' exonuclease III
Biochim. Biophys. Acta
1854
505-516
2015
Mycobacterium tuberculosis, Mycobacterium tuberculosis (P96273), Mycobacterium tuberculosis ATCC 25618 (P96273), Mycobacterium tuberculosis H37Rv (P96273)
Manually annotated by BRENDA team
Abeldenov, S.; Talhaoui, I.; Zharkov, D.O.; Ishchenko, A.A.; Ramanculov, E.; Saparbaev, M.; Khassenov, B.
Characterization of DNA substrate specificities of apurinic/apyrimidinic endonucleases from Mycobacterium tuberculosis
DNA Repair
33
1-16
2015
Mycobacterium tuberculosis, Mycobacterium tuberculosis (P96273), Mycobacterium tuberculosis H37Rv (P96273)
Manually annotated by BRENDA team
Nozaki, S.; Niki, H.
Exonuclease III (XthA) enforces in vivo DNA cloning of Escherichia coli to create cohesive ends
J. Bacteriol.
201
e00660-18
2019
Escherichia coli, Escherichia coli (P09030)
Manually annotated by BRENDA team
Khanam, T.; Rai, N.; Ramachandran, R.
Mycobacterium tuberculosis class II apurinic/apyrimidinic-endonuclease/3'-5' exonuclease III exhibits DNA regulated modes of interaction with the sliding DNA beta-clamp
Mol. Microbiol.
98
46-68
2015
Mycobacterium tuberculosis, Mycobacterium tuberculosis (P96273), Mycobacterium tuberculosis ATCC 25618 (P96273), Mycobacterium tuberculosis H37Rv (P96273)
Manually annotated by BRENDA team
Ligasova, A.; Konecny, P.; Frydrych, I.; Koberna, K.
Cell cycle profiling by image and flow cytometry The optimised protocol for the detection of replicational activity using 5-bromo-2'-deoxyuridine, low concentration of hydrochloric acid and exonuclease III
PLoS ONE
12
e0175880
2017
Homo sapiens (Q9NSU2)
Manually annotated by BRENDA team
Shiraishi, M.; Ishino, S.; Heffernan, M.; Cann, I.; Ishino, Y.
The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes EndoQ, ExoIII, and UDG
Sci. Rep.
8
15791
2018
Methanosarcina acetivorans, Methanosarcina acetivorans (Q8TP42), Methanosarcina acetivorans ATCC 35395 (Q8TP42)
Manually annotated by BRENDA team
Zhang, H.; Lin, Z.; Su, X.
Label-free detection of exonuclease III by using dsDNA-templated copper nanoparticles as fluorescent probe
Talanta
131
59-63
2015
Homo sapiens (Q9NSU2)
Manually annotated by BRENDA team