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Enzyme Nomenclature
Information on EC 2.4.1.279 - nigerose phosphorylase
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EC Tree
2.4.1.279 nigerose phosphorylaseIUBMB Comments
The enzymes from Clostridium phytofermentans is specific for nigerose, and shows only 0.5% relative activity with kojibiose (cf. EC 2.4.1.230, kojibiose phosphorylase).
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The enzyme appears in viruses and cellular organisms
Reaction Schemes
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SYNONYM 
ORGANISM
UNIPROT
COMMENTARY 
LITERATURE
cphy1874
Cphy_3313
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REACTION
REACTION DIAGRAM
COMMENTARY
ORGANISM
UNIPROT
LITERATURE
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate = D-glucose + beta-D-glucose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate = D-glucose + beta-D-glucose 1-phosphate
-
-
-
-
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate = D-glucose + beta-D-glucose 1-phosphate
sequential bi-bi mechanism
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate = D-glucose + beta-D-glucose 1-phosphate
sequential bi-bi mechanism
-
-
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
phospho group transfer
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SYSTEMATIC NAME
IUBMB Comments
3-O-alpha-D-glucopyranosyl-D-glucopyranose:phosphate beta-D-glucosyltransferase
The enzymes from Clostridium phytofermentans is specific for nigerose, and shows only 0.5% relative activity with kojibiose (cf. EC 2.4.1.230, kojibiose phosphorylase).
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SUBSTRATE
PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate)
(Substrate)
LITERATURE
(Substrate)
(Substrate)
COMMENTARY
(Product)
(Product)
LITERATURE
(Product)
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
r=reversible
ir=irreversible
?=not specified
1,5-anhydro-D-glucitol + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-1-5-anhydro-D-glucitol + phosphate
2-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
beta-D-glucose 1-phosphate + 1,5-anhydro-D-glucitol
3-O-alpha-D-glucopyranosyl-1,5-anhydro-D-glucitol + phosphate
beta-D-glucose 1-phosphate + D-galactose
3-O-alpha-D-glucopyranosyl-D-galactopyranose + phosphate
reverse phosphorolysis reaction 8.5% of the activity with 3-O-alpha-D-glucopyranosyl-D-glucopyranose, no significant preference for specific anomer of the acceptor
-
-
?
beta-D-glucose 1-phosphate + D-glucose
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
reverse phosphorolysis reaction, no significant preference for specific anomer of the acceptor
-
-
r
beta-D-glucose 1-phosphate + D-xylose
3-O-alpha-D-glucopyranosyl-D-xylopyranose + 2-O-alpha-D-glucopyranosyl-D-xylopyranose + phosphate
reverse phosphorolysis reaction 17% of the activity with 3-O-alpha-D-glucopyranosyl-D-glucopyranose
products are formed in the ratio 63:37%
-
?
beta-D-glucose 1-phosphate + methyl alpha-D-glucoside
methyl-3-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside + methyl-2-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside + phosphate
reverse phosphorolysis reaction 17% of the activity with 3-O-alpha-D-glucopyranosyl-D-glucopyranose
products are formed in the ratio 71:29%
-
?
D-galactose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-galactopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-xylose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-xylopyranose + phosphate
38% activity compared to D-glucose as acceptor
-
-
r
methyl alpha-D-glucopyranoside + beta-D-glucopyranose 1-phosphate
methyl 3-O-alpha-D-glucopyranosyl-D-glucopyranoside + phosphate
2.1% activity compared to D-glucose as acceptor
-
-
r
1,5-anhydro-D-glucitol + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-1-5-anhydro-D-glucitol + phosphate
26% activity compared to D-glucose as acceptor
-
-
r
1,5-anhydro-D-glucitol + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-1-5-anhydro-D-glucitol + phosphate
26% activity compared to D-glucose as acceptor
-
-
r
2-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
very weak phosphorolysis reaction with kojibiose, 0.5% of the activity with nigerose
-
-
r
2-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
very weak phosphorolysis reaction with kojibiose, 0.5% of the activity with nigerose
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
-
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
-
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
Nigerose may be liberated from nigeran outside the cell, transported into the cell by a sugar transporter and phosphorylyzed into beta-D-glucose 1-phosphate. This is converted into D-glucose 6-phosphate and can enter the glycolytic pathway.
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
phosphorolysis reaction with nigerose
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
Nigerose may be liberated from nigeran outside the cell, transported into the cell by a sugar transporter and phosphorylyzed into beta-D-glucose 1-phosphate. This is converted into D-glucose 6-phosphate and can enter the glycolytic pathway.
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
phosphorolysis reaction with nigerose
-
-
r
beta-D-glucose 1-phosphate + 1,5-anhydro-D-glucitol
3-O-alpha-D-glucopyranosyl-1,5-anhydro-D-glucitol + phosphate
reverse phosphorolysis reaction 15% of the activity with 3-O-alpha-D-glucopyranosyl-D-glucopyranose
-
-
?
beta-D-glucose 1-phosphate + 1,5-anhydro-D-glucitol
3-O-alpha-D-glucopyranosyl-1,5-anhydro-D-glucitol + phosphate
reverse phosphorolysis reaction 15% of the activity with 3-O-alpha-D-glucopyranosyl-D-glucopyranose
-
-
?
D-galactose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-galactopyranose + phosphate
21% activity compared to D-glucose as acceptor
-
-
r
D-galactose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-galactopyranose + phosphate
21% activity compared to D-glucose as acceptor
-
-
r
D-glucose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
-
-
-
r
D-glucose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
-
-
-
r
additional information
?
-
in the reverse phosphorolyis reaction the enzyme produces only disaccharides. The enzyme does not use any disaccharides as acceptors in the reverse phosphorolysis reaction. It does not use any D-glucose derivatives at the C2 position such as D-mannose, 2-deoxy-D-glucose, D-glucosamine, N-acetyl-D-glucosamine
-
-
?
additional information
?
-
-
in the reverse phosphorolyis reaction the enzyme produces only disaccharides. The enzyme does not use any disaccharides as acceptors in the reverse phosphorolysis reaction. It does not use any D-glucose derivatives at the C2 position such as D-mannose, 2-deoxy-D-glucose, D-glucosamine, N-acetyl-D-glucosamine
-
-
?
additional information
?
-
with beta-D-glucopyranose 1-phosphate as donor the following sugars cannot act as acceptors: D-mannose, D-allose, D-fructose, D-lyxose, D-arabinose, L-arabinose, D-glucosamine, N-acetyl-D-glucosamine, N-acetyl-D-galactosamine, L-fucose, L-rhamnose, D-glucal, 2-deoxy-D-glucose, alpha-D-glucose 1-phosphate, alpha-D-galactose 1-phosphate, D-glucose 6-phosphate, methyl beta-D-glucoside, 3-O-methyl-D-glucose, trehalose, kojibiose, nigerose, maltose, isomaltose, sophorose, laminaribiose, cellobiose, gentiobiose, xylobiose, melibiose, lactose, sucrose
-
-
?
additional information
?
-
in the reverse phosphorolyis reaction the enzyme produces only disaccharides. The enzyme does not use any disaccharides as acceptors in the reverse phosphorolysis reaction. It does not use any D-glucose derivatives at the C2 position such as D-mannose, 2-deoxy-D-glucose, D-glucosamine, N-acetyl-D-glucosamine
-
-
?
additional information
?
-
with beta-D-glucopyranose 1-phosphate as donor the following sugars cannot act as acceptors: D-mannose, D-allose, D-fructose, D-lyxose, D-arabinose, L-arabinose, D-glucosamine, N-acetyl-D-glucosamine, N-acetyl-D-galactosamine, L-fucose, L-rhamnose, D-glucal, 2-deoxy-D-glucose, alpha-D-glucose 1-phosphate, alpha-D-galactose 1-phosphate, D-glucose 6-phosphate, methyl beta-D-glucoside, 3-O-methyl-D-glucose, trehalose, kojibiose, nigerose, maltose, isomaltose, sophorose, laminaribiose, cellobiose, gentiobiose, xylobiose, melibiose, lactose, sucrose
-
-
?
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NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate)
(Substrate)
LITERATURE
(Substrate)
(Substrate)
COMMENTARY
(Product)
(Product)
LITERATURE
(Product)
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
r=reversible
ir=irreversible
?=not specified
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
-
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucopyranose 1-phosphate
-
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
Nigerose may be liberated from nigeran outside the cell, transported into the cell by a sugar transporter and phosphorylyzed into beta-D-glucose 1-phosphate. This is converted into D-glucose 6-phosphate and can enter the glycolytic pathway.
-
-
r
3-O-alpha-D-glucopyranosyl-D-glucopyranose + phosphate
D-glucose + beta-D-glucose 1-phosphate
Nigerose may be liberated from nigeran outside the cell, transported into the cell by a sugar transporter and phosphorylyzed into beta-D-glucose 1-phosphate. This is converted into D-glucose 6-phosphate and can enter the glycolytic pathway.
-
-
r
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METALS and IONS
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
additional information
additional information
no divalent metal ions required
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INHIBITOR
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
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KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
1.7
3-O-alpha-D-glucopyranosyl-D-glucopyranose
pH 7.0, 30°C, phosphorolyis reaction
1.2
beta-D-glucopyranose 1-phosphate
pH 7.0, 30°C, reverse phosphorolysis, acceptor D-glucose
79
methyl alpha-D-glucopyranoside
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
1 - 7
1,5-anhydro-D-glucitol
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
79
1,5-anhydro-D-glucitol
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
20
D-galactose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
104
D-galactose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
2.1
D-glucose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
3.3
D-glucose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
1 - 7
D-xylose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
86
D-xylose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
0.2
phosphate
pH 7.0, 30°C, phosphorolysis reaction, cosubstrate 3-O-alpha-D-glucopyranosyl-D-glucopyranose
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TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
31
3-O-alpha-D-glucopyranosyl-D-glucopyranose
pH 7.0, 30°C
58
beta-D-glucopyranose 1-phosphate
pH 7.0, 30°C, reverse phosphorolysis, acceptor D-glucose
8.3
methyl alpha-D-glucopyranoside
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
67
phosphate
pH 7.0, 30°C, cosubstrate 3-O-alpha-D-glucopyranosyl-D-glucopyranose
30
1,5-anhydro-D-glucitol
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
120
1,5-anhydro-D-glucitol
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
25
D-galactose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
69
D-galactose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
52
D-glucose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
110
D-glucose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
40
D-xylose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
118
D-xylose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
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kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
49
beta-D-glucopyranose 1-phosphate
pH 7.0, 30°C, reverse phosphorolysis, acceptor D-glucose
0.11
methyl alpha-D-glucopyranoside
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
1.5
1,5-anhydro-D-glucitol
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
1.8
1,5-anhydro-D-glucitol
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
0.7
D-galactose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
1.3
D-galactose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
24
D-glucose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
33
D-glucose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
1.4
D-xylose
pH 7.0, 30°C, reverse phosphorolysis reaction, cosubstrate beta-D-glucose 1-phosphate
2.4
D-xylose
pH 7.0, 30°C, reverse phosphorolysis, donor beta-D-glucopyranose 1-phosphate
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Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
6.4
3-O-alpha-D-glucopyranosyl-D-glucopyranose
pH 7.0, 30°C
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SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
0.17
32
pH 7.0, 30°C, phosphorolysis reaction, substrate 3-O-alpha-D-glucopyranosyl-D-glucopyranose
4.6
pH 7.0, 30°C, reverse phosphorolysis reaction, substrates beta-D-glucose 1-phosphate + D-galactose
54
pH 7.0, 30°C, reverse phosphorolysis reaction, substrates beta-D-glucose 1-phosphate + D-glucose
8.1
pH 7.0, 30°C, reverse phosphorolysis reaction, substrates beta-D-glucose 1-phosphate + 1,5-anhydro-D-glucitol
9.3
pH 7.0, 30°C, reverse phosphorolysis reaction, substrates beta-D-glucose 1-phosphate + D-xylose
0.17
pH 7.0, 30°C, phosphorolysis reaction, substrate 2-O-alpha-D-glucopyranosyl-D-glucopyranose
0.17
pH 7.0, 30°C, reverse phosphorolysis reaction, substrates beta-D-glucose 1-phosphate + methyl alpha-D-glucoside
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pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
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TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
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UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION
The reliability class of the localization prediction ranges from 1 (very reliable) to 5 (not reliable).
The reliability class of the localization prediction ranges from 1 (very reliable) to 5 (not reliable). NIGP_LACP7
Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
753
0
87173
Swiss-Prot
-
A0A1V5TMK1_9FIRM
897
0
100470
TrEMBL
-
A0A1V5YDH6_9FIRM
750
0
84929
TrEMBL
-
A0A1V5Y370_9FIRM
602
0
67258
TrEMBL
-
B0NF50_CLOS5
Clostridium scindens (strain ATCC 35704 / DSM 5676 / VPI 13733 / 19)
758
0
87415
TrEMBL
-
A0A1V6BKJ1_9BACT
716
0
81976
TrEMBL
-
A0A1V5ZHG9_9BACT
842
0
94099
TrEMBL
-
A0A1J5S7S8_9ZZZZ
779
0
86663
TrEMBL
Mitochondrion (Reliability: 4)
A0A212JPJ5_9FIRM
707
0
77872
TrEMBL
-
A0A1V6CCM8_9BACT
724
0
83659
TrEMBL
-
A9KSL5_LACP7
Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
748
0
85112
TrEMBL
-
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MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
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pH STABILITY
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
5.5 - 9
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TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
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PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
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CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Nihira, T.; Nakai, H.; Chiku, K.; Kitaoka, M.
Discovery of nigerose phosphorylase from Clostridium phytofermentans
Appl. Microbiol. Biotechnol.
93
1513-1522
2012
Lachnoclostridium phytofermentans (A9KT32), Lachnoclostridium phytofermentans, Lachnoclostridium phytofermentans ATCC 700394 (A9KT32)
brenda
Nihira, T.; Nishimoto, M.; Nakai, H.; Ohtsubo, K.; Kitaoka, M.
Characterization of two phosphorylases for alpha-1,3-oligoglucans from Clostridium phytofermentans
J. Appl. Glycosci.
61
59-66
2014
Lachnoclostridium phytofermentans (A9KSL5), Lachnoclostridium phytofermentans DSM 18823 (A9KSL5)
-
brenda
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Release 2023.1 (January 2023)
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