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1-butanol + phenazine ethosulfate
butyraldehyde + reduced phenazine ethosulfate
1-butanol + phenazine methosulfate
butyraldehyde + reduced phenazine methosulfate
1-hexanol + phenazine ethosulfate
hexaldehyde + reduced phenazine ethosulfate
1-hexanol + phenazine methosulfate
hexaldehyde + reduced phenazine methosulfate
1-propanol + phenazine ethosulfate
propionaldehyde + reduced phenazine ethosulfate
1-propanol + phenazine methosulfate
propionaldehyde + reduced phenazine methosulfate
2-propanol + phenazine ethosulfate
?
2-propanol + phenazine methosulfate
?
acetaldehyde + reduced phenazine ethosulfate
ethanol + phenazine ethosulfate
-
less than 50% activity compared to methanol
-
?
acetaldehyde + reduced phenazine methosulfate
ethanol + phenazine methosulfate
ethanol + phenazine ethosulfate
acetaldehyde + reduced phenazine ethosulfate
ethanol + phenazine methosulfate
acetaldehyde + reduced phenazine methosulfate
formaldehyde + reduced phenazine ethosulfate
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine methosulfate
methanol + phenazine methosulfate
methanol + 2 oxidized cytochrome cGJ
formaldehyde + 2 reduced cytochrome cGJ
methanol + 2 oxidized cytochrome cL
formaldehyde + 2 reduced cytochrome cL
-
c-type cytochrome XoxG
-
?
methanol + oxidized cytochrome c XoxG
formaldehyde + reduced cytochrome c XoxG
-
-
-
?
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
propionaldehyde + reduced phenazine methosulfate
1-propanol + phenazine methosulfate
additional information
?
-
1-butanol + phenazine ethosulfate

butyraldehyde + reduced phenazine ethosulfate
-
78.3% activity compared to methanol
-
r
1-butanol + phenazine ethosulfate
butyraldehyde + reduced phenazine ethosulfate
-
78.3% activity compared to methanol
-
r
1-butanol + phenazine ethosulfate
butyraldehyde + reduced phenazine ethosulfate
-
100% activity compared to methanol
-
?
1-butanol + phenazine ethosulfate
butyraldehyde + reduced phenazine ethosulfate
-
100% activity compared to methanol
-
?
1-butanol + phenazine methosulfate

butyraldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-butanol + phenazine methosulfate
butyraldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-butanol + phenazine methosulfate
butyraldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-hexanol + phenazine ethosulfate

hexaldehyde + reduced phenazine ethosulfate
-
100% activity compared to methanol
-
?
1-hexanol + phenazine ethosulfate
hexaldehyde + reduced phenazine ethosulfate
-
100% activity compared to methanol
-
?
1-hexanol + phenazine methosulfate

hexaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-hexanol + phenazine methosulfate
hexaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-hexanol + phenazine methosulfate
hexaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-propanol + phenazine ethosulfate

propionaldehyde + reduced phenazine ethosulfate
-
85.3% activity compared to methanol
-
r
1-propanol + phenazine ethosulfate
propionaldehyde + reduced phenazine ethosulfate
-
85.3% activity compared to methanol
-
r
1-propanol + phenazine ethosulfate
propionaldehyde + reduced phenazine ethosulfate
-
100% activity compared to methanol
-
?
1-propanol + phenazine methosulfate

propionaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-propanol + phenazine methosulfate
propionaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
1-propanol + phenazine methosulfate
propionaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
2-propanol + phenazine ethosulfate

?
-
0.775% activity compared to methanol
-
r
2-propanol + phenazine ethosulfate
?
-
0.775% activity compared to methanol
-
r
2-propanol + phenazine methosulfate

?
-
40% activity compared to methanol
-
r
2-propanol + phenazine methosulfate
?
-
subtype XoxF4-1 shows 20% activity compared to methanol, subtype XoxF4-2 shows 5% activity compared to methanol
-
r
acetaldehyde + reduced phenazine methosulfate

ethanol + phenazine methosulfate
-
60% activity compared to methanol
-
r
acetaldehyde + reduced phenazine methosulfate
ethanol + phenazine methosulfate
-
subtype XoxF4-1 shows 50% activity compared to methanol, subtype XoxF4-2 shows 15% activity compared to methanol
-
r
ethanol + phenazine ethosulfate

acetaldehyde + reduced phenazine ethosulfate
-
93% activity compared to methanol
-
r
ethanol + phenazine ethosulfate
acetaldehyde + reduced phenazine ethosulfate
-
93% activity compared to methanol
-
r
ethanol + phenazine ethosulfate
acetaldehyde + reduced phenazine ethosulfate
-
100% activity compared to methanol
-
?
ethanol + phenazine methosulfate

acetaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
ethanol + phenazine methosulfate
acetaldehyde + reduced phenazine methosulfate
highest activity
-
r
ethanol + phenazine methosulfate
acetaldehyde + reduced phenazine methosulfate
-
best substrate for ExaF
-
?
ethanol + phenazine methosulfate
acetaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
ethanol + phenazine methosulfate
acetaldehyde + reduced phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
formaldehyde + reduced phenazine ethosulfate

methanol + phenazine ethosulfate
-
91.5% activity compared to methanol
-
r
formaldehyde + reduced phenazine ethosulfate
methanol + phenazine ethosulfate
-
100% activity compared to methanol
-
r
formaldehyde + reduced phenazine methosulfate

methanol + phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
formaldehyde + reduced phenazine methosulfate
methanol + phenazine methosulfate
the enzyme is 100times more efficient at oxidizing formaldehyde than methanol
-
r
formaldehyde + reduced phenazine methosulfate
methanol + phenazine methosulfate
-
more than 95% activity compared to methanol
-
r
methanol + 2 oxidized cytochrome cGJ

formaldehyde + 2 reduced cytochrome cGJ
-
-
-
?
methanol + 2 oxidized cytochrome cGJ
formaldehyde + 2 reduced cytochrome cGJ
-
-
-
?
methanol + phenazine ethosulfate

formaldehyde + reduced phenazine ethosulfate
-
100% activity
-
r
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
-
100% activity
-
r
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
-
-
-
?
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
-
100% activity
-
r
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
-
-
-
?
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
-
100% activity
-
r
methanol + phenazine ethosulfate
formaldehyde + reduced phenazine ethosulfate
-
-
-
?
methanol + phenazine methosulfate

formaldehyde + reduced phenazine methosulfate
-
100% activity
-
r
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
100% activity
-
r
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
100% activity
-
r
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
-
r
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
best substrate for XoxF1
-
?
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
100% activity
-
r
methanol + phenazine methosulfate
formaldehyde + reduced phenazine methosulfate
-
100% activity
-
r
propionaldehyde + reduced phenazine methosulfate

1-propanol + phenazine methosulfate
-
60% activity compared to methanol
-
r
propionaldehyde + reduced phenazine methosulfate
1-propanol + phenazine methosulfate
-
subtype XoxF4-1 shows 50% activity compared to methanol, subtype XoxF4-2 shows 15% activity compared to methanol
-
r
additional information

?
-
-
no activity with 2-propanol and formate
-
-
additional information
?
-
-
no activity with 2-propanol and formate
-
-
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0.007 - 0.815
formaldehyde
0.0025 - 0.0076
oxidized cytochrome cL
-
0.006
1-butanol

-
at pH 7.0 and 40-45°C
0.096
1-butanol
-
at pH 9.0 and 26°C
0.188
1-butanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
0.47
1-butanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
0.002
1-Hexanol

-
at pH 7.0 and 40-45°C
0.037
1-Hexanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
0.04
1-Hexanol
-
at pH 9.0 and 26°C
0.357
1-Hexanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
0.007
1-propanol

-
at pH 7.0 and 40-45°C
0.061
1-propanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
0.133
1-propanol
-
at pH 9.0 and 26°C
0.873
1-propanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
0.2
acetaldehyde

-
Km above 0.2 mM, at pH 7.0 and 40-45°C
0.285
acetaldehyde
at pH 9.0 and 30°C
0.0009
ethanol

at pH 9.0 and 30°C
0.003
ethanol
-
at pH 7.0 and 40-45°C
0.014
ethanol
-
XoxF1, in the absence of lanthanides, pH and temperature not specified in the publication
0.059
ethanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
0.067
ethanol
-
XoxF1, in the presence of La3+, pH and temperature not specified in the publication
0.085
ethanol
-
at pH 9.0 and 26°C
0.515
ethanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
0.007
formaldehyde

-
at pH 7.0 and 40-45°C
0.065
formaldehyde
-
XoxF1, in the absence of lanthanides, pH and temperature not specified in the publication
0.066
formaldehyde
at pH 9.0 and 30°C
0.096
formaldehyde
-
XoxF1, in the presence of La3+, pH and temperature not specified in the publication
0.133
formaldehyde
-
XoxF1, in the presence of Nd3+, pH and temperature not specified in the publication
0.432
formaldehyde
-
subtype XoxF4-1, at pH 9.0 and 26°C
0.464
formaldehyde
-
at pH 9.0 and 26°C
0.815
formaldehyde
-
subtype XoxF4-2, at pH 9.0 and 26°C
0.0008
methanol

-
at pH 7.0 and 40-45°C
0.0008
methanol
-
in the presence of a mixture of La3+, Ce3+, Pr3+, Nd3+, at pH 7.2 and 60°C
0.00082
methanol
-
in the presence of 0.02 mM Eu3+ and Lu3+, at pH 7.2 and 45°C
0.00091
methanol
-
in the presence of 0.02 mM Eu3+, at pH 7.2 and 45°C
0.00132
methanol
-
in the presence of 0.02 mM Eu3+ and La3+, at pH 7.2 and 45°C
0.00362
methanol
-
in the presence of 0.02 mM Eu3+, at pH 7.2 and 45°C
0.011
methanol
-
XoxF1, in the absence of lanthanides, pH and temperature not specified in the publication
0.018
methanol
-
in the presence of Nd3+, at pH 7.0 and 30°C
0.022
methanol
-
in the presence of La3+, at pH 7.0 and 30°C
0.029
methanol
-
XoxF1, in the presence of Nd3+, pH and temperature not specified in the publication
0.042
methanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
0.044
methanol
-
XoxF1, in the presence of La3+, pH and temperature not specified in the publication
0.049
methanol
-
in the presence of Ce3+, at pH 7.0 and 30°C
0.055
methanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
0.067
methanol
-
at pH 9.0 and 30°C
5.98
methanol
at pH 9.0 and 30°C
0.0025
oxidized cytochrome cL

-
in the presence of La3+, at pH 7.0 and 30°C
-
0.0044
oxidized cytochrome cL
-
in the presence of Ce3+, at pH 7.0 and 30°C
-
0.0076
oxidized cytochrome cL
-
in the presence of Nd3+, at pH 7.0 and 30°C
-
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20
acetaldehyde
at pH 9.0 and 30°C
170 - 490
oxidized cytochrome cL
-
2.15
1-butanol

-
subtype XoxF4-2, at pH 9.0 and 26°C
16.63
1-butanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
133.9
1-butanol
-
at pH 9.0 and 26°C
5.54
1-Hexanol

-
subtype XoxF4-2, at pH 9.0 and 26°C
34.88
1-Hexanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
415.52
1-Hexanol
-
at pH 9.0 and 26°C
1.73
1-propanol

-
subtype XoxF4-2, at pH 9.0 and 26°C
35.36
1-propanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
112.54
1-propanol
-
at pH 9.0 and 26°C
4
ethanol

-
XoxF1, in the absence of lanthanides, pH and temperature not specified in the publication
5.99
ethanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
27.03
ethanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
159.15
ethanol
-
at pH 9.0 and 26°C
194
ethanol
-
XoxF1, in the presence of La3+, pH and temperature not specified in the publication
14500
ethanol
at pH 9.0 and 30°C
2.48
formaldehyde

-
subtype XoxF4-2, at pH 9.0 and 26°C
3.97
formaldehyde
-
subtype XoxF4-1, at pH 9.0 and 26°C
5
formaldehyde
-
XoxF1, in the absence of lanthanides, pH and temperature not specified in the publication
36
formaldehyde
-
XoxF1, in the presence of Nd3+, pH and temperature not specified in the publication
37.86
formaldehyde
-
at pH 9.0 and 26°C
109
formaldehyde
-
XoxF1, in the presence of La3+, pH and temperature not specified in the publication
259
formaldehyde
at pH 9.0 and 30°C
2
methanol

at pH 9.0 and 30°C
3
methanol
-
XoxF1, in the absence of lanthanides, pH and temperature not specified in the publication
26
methanol
-
in the presence of 0.02 mM Eu3+ and Lu3+, at pH 7.2 and 45°C
27.17
methanol
-
subtype XoxF4-1, at pH 9.0 and 26°C
42.19
methanol
-
subtype XoxF4-2, at pH 9.0 and 26°C
50
methanol
-
in the presence of 0.02 mM Eu3+, at pH 7.2 and 45°C
55
methanol
-
in the presence of 0.02 mM Eu3+, at pH 7.2 and 45°C
57
methanol
-
in the presence of Ce3+, at pH 7.0 and 30°C
67
methanol
-
in the presence of Nd3+, at pH 7.0 and 30°C
123
methanol
-
in the presence of 0.02 mM Eu3+ and La3+, at pH 7.2 and 45°C
190
methanol
-
in the presence of La3+, at pH 7.0 and 30°C
210
methanol
-
XoxF1, in the presence of Nd3+, pH and temperature not specified in the publication
272
methanol
-
XoxF1, in the presence of La3+, pH and temperature not specified in the publication
342.55
methanol
-
at pH 9.0 and 26°C
5800
methanol
-
in the presence of a mixture of La3+, Ce3+, Pr3+, Nd3+, at pH 7.2 and 60°C
170
oxidized cytochrome cL

-
in the presence of Nd3+, at pH 7.0 and 30°C
-
280
oxidized cytochrome cL
-
in the presence of Ce3+, at pH 7.0 and 30°C
-
490
oxidized cytochrome cL
-
in the presence of La3+, at pH 7.0 and 30°C
-
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Good, N.M.; Vu, H.N.; Suriano, C.J.; Subuyuj, G.A.; Skovran, E.; Martinez-Gomez, N.C.
Pyrroloquinoline quinone ethanol dehydrogenase in Methylobacterium extorquens AM1 extends lanthanide-dependent metabolism to multicarbon substrates
J. Bacteriol.
198
3109-3118
2016
Methylorubrum extorquens (C5AXV8), Methylorubrum extorquens
brenda
Versantvoort, W.; Pol, A.; Daumann, L.J.; Larrabee, J.A.; Strayer, A.H.; Jetten, M.S.M.; van Niftrik, L.; Reimann, J.; Op den Camp, H.J.M.
Characterization of a novel cytochrome cGJ as the electron acceptor of XoxF-MDH in the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV
Biochim. Biophys. Acta Proteins Proteom.
1867
595-603
2019
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
brenda
Featherston, E.R.; Rose, H.R.; McBride, M.J.; Taylor, E.M.; Boal, A.K.; Cotruvo, J.A.
Biochemical and structural characterization of XoxG and XoxJ and their roles in lanthanide-dependent methanol dehydrogenase activity
ChemBioChem
20
2360-2372
2019
Methylorubrum extorquens
brenda
Bogart, J.A.; Lewis, A.J.; Schelter, E.J.
DFT study of the active site of the XoxF-type natural, cerium-dependent methanol dehydrogenase enzyme
Chemistry
21
1743-1748
2015
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
brenda
Prejano, M.; Marino, T.; Russo, N.
How can methanol dehydrogenase from Methylacidiphilum fumariolicum work with the alien CeIII ion in the active center? A theoretical study
Chemistry
23
8652-8657
2017
Methylacidiphilum fumariolicum
brenda
Lumpe, H.; Pol, A.; Op den Camp, H.J.M.; Daumann, L.J.
Impact of the lanthanide contraction on the activity of a lanthanide-dependent methanol dehydrogenase - a kinetic and DFT study
Dalton Trans.
47
10463-10472
2018
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
brenda
Pol, A.; Barends, T.R.; Dietl, A.; Khadem, A.F.; Eygensteyn, J.; Jetten, M.S.; Op den Camp, H.J.
Rare earth metals are essential for methanotrophic life in volcanic mudpots
Environ. Microbiol.
16
255-264
2014
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
brenda
Lv, H.; Sahin, N.; Tani, A.
Isolation and genomic characterization of Novimethylophilus kurashikiensis gen. nov. sp. nov., a new lanthanide-dependent methylotrophic species of Methylophilaceae
Environ. Microbiol.
20
1204-1223
2018
Novimethylophilus kurashikiensis, Novimethylophilus kurashikiensis La2-4T
brenda
Wang, L.; Suganuma, S.; Hibino, A.; Mitsui, R.; Tani, A.; Matsumoto, T.; Ebihara, A.; Fitriyanto, N.A.; Pertiwiningrum, A.; Shimada, M.; Hayakawa, T.; Nakagawa, T.
Lanthanide-dependent methanol dehydrogenase from the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium diazoefficiens strain USDA110
Enzyme Microb. Technol.
130
109371
2019
Bradyrhizobium diazoefficiens, Bradyrhizobium diazoefficiens USDA110
brenda
Huang, J.; Yu, Z.; Chistoserdova, L.
Lanthanide-dependent methanol dehydrogenases of XoxF4 and XoxF5 clades are differentially distributed among methylotrophic bacteria and they reveal different biochemical properties
Front. Microbiol.
9
1366
2018
Methylotenera mobilis, Methylomonas sp. LW13, Methylotenera mobilis JLW8
brenda
De Simone, G.; Polticelli, F.; Aime, S.; Ascenzi, P.
Lanthanides-based catalysis in eukaryotes
IUBMB Life
70
1067-1075
2018
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SolV
brenda
De Simone, G.; Polticelli, F.; Aime, S.; Ascenzi, P.
No lanthanides-based catalysis in eukaryotes
IUBMB Life
71
398-399
2019
no activity in eukaryotes
brenda
McSkimming, A.; Cheisson, T.; Carroll, P.J.; Schelter, E.J.
Functional synthetic model for the lanthanide-dependent quinoid alcohol dehydrogenase active site
J. Am. Chem. Soc.
140
1223-1226
2018
Methylacidiphilum fumariolicum, Methylacidiphilum fumariolicum SoIV
brenda
Vu, H.N.; Subuyuj, G.A.; Vijayakumar, S.; Good, N.M.; Martinez-Gomez, N.C.; Skovran, E.
Lanthanide-dependent regulation of methanol oxidation systems in Methylobacterium extorquens AM1 and their contribution to methanol growth
J. Bacteriol.
198
1250-1259
2016
Methylorubrum extorquens
brenda
Chu, F.; Lidstrom, M.E.
XoxF acts as the predominant methanol dehydrogenase in the type I methanotroph Methylomicrobium buryatense
J. Bacteriol.
198
1317-1325
2016
Methylomicrobium buryatense, Methylomicrobium buryatense 5GB1C
brenda
Deng, Y.W.; Ro, S.Y.; Rosenzweig, A.C.
Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C
J. Biol. Inorg. Chem.
23
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2018
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Methylobacterium radiotolerans, Methylobacterium radiotolerans NBRC15690
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Methylomonas sp. LW13
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Methylorubrum extorquens
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