The use of pressure-jump relaxation kinetics to study protein folding landscapes

Torrent, J.; Font, J.; Herberhold, H.; Marchal, S.; Ribo, M.; Ruan, K.; Winter, R.; Vilanova, M.; Lange, R.; Biochim. Biophys. Acta 1764, 489-496 (2006)

show all sequences of 3.1.27.5

Data extracted from this reference:

Engineering
Amino acid exchange Commentary Organism
Y115W large increase in fluorescence yield upon unfolding. Analysis of reversible pressure dependent unfolding profiles. With increasing temperature, the sigmoidal unfolding transition is shifted towards higher pressures Bos taurus
Organism
Organism Primary Accession No. (UniProt) Commentary Textmining
Bos taurus
-
-
-
Renatured (Commentary)
Commentary Organism
analysis of reversible pressure dependent unfolding profiles of mutant Y115W. With increasing temperature, the sigmoidal unfolding transition is shifted towards higher pressures Bos taurus
Engineering (protein specific)
Amino acid exchange Commentary Organism
Y115W large increase in fluorescence yield upon unfolding. Analysis of reversible pressure dependent unfolding profiles. With increasing temperature, the sigmoidal unfolding transition is shifted towards higher pressures Bos taurus
Renatured (Commentary) (protein specific)
Commentary Organism
analysis of reversible pressure dependent unfolding profiles of mutant Y115W. With increasing temperature, the sigmoidal unfolding transition is shifted towards higher pressures Bos taurus


See also following references to EC number 3.1.27.5 (sorted by year of publication):
No.1st authorPub
Med
titleorganimsjournalvolumepagesyearActivating CompoundApplicationCloned(Commentary)Crystallization (Commentary)EngineeringGeneral StabilityInhibitorsKM Value [mM]LocalizationMetals/IonsMolecular Weight [Da]Natural Substrates/ Products (Substrates)Organic Solvent StabilityOrganismOxidation StabilityPosttranslational ModificationPurification (Commentary)ReactionRenatured (Commentary)Source TissueSpecific Activity [micromol/min/mg]Storage StabilitySubstrates and Products (Substrate)SubunitsTemperature Optimum [°C]Temperature Range [°C]Temperature Stability [°C]Turnover Number [1/s]pH OptimumpH RangepH StabilityCofactorKi Value [mM]pI ValueIC50 ValueActivating Compound (protein specific)Application (protein specific)Cloned(Commentary) (protein specific)Cofactor (protein specific)Crystallization (Commentary) (protein specific)Engineering (protein specific)General Stability (protein specific)IC50 Value (protein specific)Inhibitors (protein specific)Ki Value [mM] (protein specific)KM Value [mM] (protein specific)Localization (protein specific)Metals/Ions (protein specific)Molecular Weight [Da] (protein specific)Natural Substrates/ Products (Substrates) (protein specific)Organic Solvent Stability (protein specific)Oxidation Stability (protein specific)Posttranslational Modification (protein specific)Purification (Commentary) (protein specific)Renatured (Commentary) (protein specific)Source Tissue (protein specific)Specific Activity [micromol/min/mg] (protein specific)Storage Stability (protein specific)Substrates and Products (Substrate) (protein specific)Subunits (protein specific)Temperature Optimum [°C] (protein specific)Temperature Range [°C] (protein specific)Temperature Stability [°C] (protein specific)Turnover Number [1/s] (protein specific)pH Optimum (protein specific)pH Range (protein specific)pH Stability (protein specific)pI Value (protein specific)ExpressionGeneral InformationGeneral Information (protein specific)Expression (protein specific)KCat/KM [mM/s]KCat/KM [mM/s] (protein specific)
717255DoucetAlteration of hydrogen bonding ...Bos taurusBiochemistry501723-17302011--1-2-1------1--1--------------------1--2--1---------1--------------------
717258CuchilloBovine pancreatic ribonuclease ...Bos taurusBiochemistry507835-78412011-------------2---1-1-----------------------------------1------------------
717377Samanta5'-modified pyrimidine nucleos ...Bos taurusBioorg. Med. Chem.192478-24842011------5------1--------1-1---1---4----------54-------------1-1---1---------
717596ArnoldCrystal structure of RNase A t ...Bos taurusFEBS J.278331-3402011---1--1------1--------1----------------1---1--------------1----------11---
717861GeigerFolding, quality control, and ...Bos taurus, Homo sapiensJ. Biol. Chem.2865813-58222011--2-1---6----4-2---6---2-------------2--1-----6-----2--6---2---------22---
718115GrahamOn the information expressed i ...Bos taurusMol. Divers.15769-7792011---13--------1-------------------------13---------------------------------
718274RehmanFunctional role of glutamine 2 ...Homo sapiensPLoS ONE6e171592011----10--21-----2-----2--3-1-1201-----------10----21---------2--3-1-1201----11-2020
718368MillerPropensity for C-terminal doma ...Bos taurusProtein Sci.201735-17442011----6--------3---------1----------------6------------------1---------11---
706984LarsonStructure of bovine pancreatic ...Bos taurusActa Crystallogr. Sect. F66113-1202010---1---------2-----2-------------------1---------------2------------------
707243AllgaierExpression of ribonuclease A a ...Bos taurusAppl. Microbiol. Biotechnol.851041-10492010--1----------1--------------1--------1--------------------------1---------
708880Lopez-AlonsoNMR spectroscopy reveals that ...Bos taurusJ. Am. Chem. Soc.1321621-16302010------------21--1--1---2--------------------------2--1-1---2--------------
709874YuAdaptive evolution of digestiv ...Colobus angolensis, Colobus polykomos, Rhinopithecus avunculus, Rhinopithecus bieti, Rhinopithecus roxellana, Trachypithecus francoisi, Trachypithecus johnii, Trachypithecus phayrei, Trachypithecus poliocephalus leucocephalus, Trachypithecus vetulusMol. Biol. Evol.27121-1312010-------------22-----1-----------------------------------1------------------
710433GoldschmidtIdentifying the amylome, prote ...Bos taurusProc. Natl. Acad. Sci. USA1073487-34922010-------------1---------1-----------------------------------1--------------
717242AraiCharacterization of kinetic an ...Bos taurusBiochemistry4910535-105422010-------1-----2-----3-------------------------1---------3-------------11---
717298VottarielloZero-length dimers of ribonucl ...Bos taurusBioconjug. Chem.21635-6452010----2--------1--1--21-111---1-----------2------------1-21-111---1---------
717371DebnathComparative inhibitory activit ...Bos taurusBioorg. Med. Chem.188257-82632010------4------1-----2--1-1---1---3----------43----------2--1-1---1---------
717990MillerA hinge region cis-proline in ...Bos taurusJ. Mol. Biol.400567-5782010----3--------4-----2--------------------3--------------2-------------11---
718374DoucetThe crystal structure of ribon ...Bos taurusProteins782459-24682010---1--4------3-----4-------------------1---4-----------4-------------11---
691341MerlinoTowards an antitumor form of b ...Bos taurusBiopolymers911029-10372009--113--------3--1-12---1-------------1-13------------112---1--------------
694252TorrentBactericidal activity engineer ...Homo sapiens, Rana pipiensMol. Pharm.6531-5422009--2-2-----2--4--1-11-----------------2--2-------2----111------------------
695023MerlinoStructural features for the me ...Homo sapiensProtein Sci.1850-572009--111-1------4--1--1---1-------------1-11--1---------1-1---1--------------
706955YagiA neutron crystallographic ana ...Bos taurusActa Crystallogr. Sect. D65892-8992009---1---------2-----2-------------------1---------------2-------------11---
706977TsirkoneInhibitor design for ribonucle ...Bos taurusActa Crystallogr. Sect. F65671-6772009---1--2------2------------------2------1---22-----------------------------
707361PearceDoes domain swapping improve t ...Bos taurusBiochem. Biophys. Res. Commun.382114-1182009-----1-------1--1------1--1--------------1-----------1-----1--1-----------
707494RamadanArsenic(III) species inhibit o ...Bos taurusBiochemistry48424-4322009------1------1-----------------------------1------------------------------
707495DicksonSilencing an inhibitor unleash ...Bos taurusBiochemistry485051-50532009------1-2----3-----2-----------------------1--2--------2------------------
707508AlmarzaMolecular mechanism for the de ...Bos taurusBiochemistry487608-76132009------1------1--------1--------------------1--------------1----------11---
707728DebnathNucleoside-amino acid conjugat ...Bos taurusBioorg. Med. Chem.174921-49272009------10------1-----1------------2----------102----------1------------------
707730DebnathInhibition of ribonuclease A b ...Bos taurusBioorg. Med. Chem.176491-64952009------5------1-----1------------3----------53----------1------------------
707748PecherThe effect of additional disul ...Bos taurusBiophys. Chem.14121-282009----6--------1--1--1--1---1-------------6------------1-1--1---1---------77
707755ErcoleComparison of the structural a ...Bos taurusBiopolymers911009-10172009--1-4--------3--1------1-------------1--4------------1-----1--------------
707756VilaMapping the stability clusters ...Bos taurusBiopolymers911038-10472009--1-201----9--3--1--1-----------------1--201------9----1-1------------------
707757HollowayInfluence of naturally-occurri ...Bos taurusBiopolymers91995-10082009---1--5------1-----1-------------------1---5-----------1------------------
707863LeeFolding machineries displayed ...Bos taurusBMC Biotechnol.9272009--1----------1----11-----------------1----------------11------------------
709180DayRefolding of ribonuclease A mo ...Bos taurusJ. Biomol. NMR4477-862009------------23----11------------------------------2---11------------------
709463SamantaMorpholino, piperidino, and py ...Bos taurusJ. Med. Chem.52932-9422009-1-1--6------1-----1------------6---1--1---66----------1------------------
709918ShahhoseiniEvidence for the structural st ...Bos taurusMol. Cell. Biochem.32165-722009-------------1-----1--1--------------------------------1--1---------------
710510DecheneMultiple solvent crystal struc ...Bos taurusProteins76861-8812009---1---------3--1--1-------------------1-------------1-1------------------
710511KurpiewskaX-ray crystallographic studies ...Bos taurusProteins77658-6692009--117--------3--1--1-----------------1-17------------1-1------------------
710570GhoshInteraction of aurintricarboxy ...Bos taurusSpectrochim. Acta A. Mol. Biomol. Spectrosc.741145-11512009------1------1-----1--1--------------------1-----------1--1---------------
678349MerkleyConformational changes below t ...Bos taurusBiochemistry47880-8922008---1---------3-----1------1------------1---------------1------1-----------
678745ChoiRetardation of the unfolding p ...Bos taurusBiopolymers89114-1232008-------------2-1--12--------------------------------1-12------------------
678746CozzaElucidation of the ribonucleas ...Bos taurusBiopolymers8926-392008------------13-----2---1--------------------------1----2---1--------------
681467LeeStructural basis for catalysis ...Rana pipiensJ. Mol. Biol.375165-1772008---16-2------5-----3--2---------2------16--22----------3--2---------------
682061SkewisSpermidine modulated ribonucle ...Bos taurusNano Lett.8214-2202008-1----1------1----------------------1------1------------------------------
690788UekiDevelopment of genotyping meth ...Homo sapiensBiochem. Genet.46145-1532008-------------2-----1-----------------------------------1------------------
690789GautschiSelection against glycosylatio ...Bos taurusBiochem. Genet.46446-4502008--1-1--------1-----1-----------------1--1--------------1------------------
693647KoeverThe solution structure and dyn ...Homo sapiensJ. Mol. Biol.379953-9652008--1-----3----4-----6---2-------------1--------3--------6---2--------------
695018RodriguezNonspecific base recognition m ...Escherichia coliProtein Sci.17681-6902008--11---------3--1--------------------1-1-------------1--------------------
677404LarsonA new crystal form of bovine p ...Bos taurusActa Crystallogr. Sect. FF63728-7332007---1---------3-----2-------------------1---------------2------------------
677546TanPreparation of superparamagnet ...Bos taurusAnal. Chem.79299-3062007-1-----------1-----1----------------1------------------1------------------
677965YakovlevLow molecular weight chitosan ...Bos taurusBiochem. Biophys. Res. Commun.357584-5882007------2------2--------2---------2----------22-------------2---------------
677975DeyRole of unique basic residues ...Homo sapiensBiochem. Biophys. Res. Commun.360809-8142007----4--10-----3-----2--2---610------------4----10---------2--2---610----------
678502PouckovaCytotoxicity of polyspermine-r ...Bos taurusBioconjugate Chem.181946-19552007-1--1--------1-----110-2-------------1---1--------------110-2---------------
678558ZhuRNase9, an androgen-dependent ...Rattus norvegicusBiol. Reprod.7663-732007----------1--4-1---4---1---------2--------------1---1--4---1-------2------
678729PolydoridisRecognition of ribonuclease a ...Bos taurusBiophys. J.921659-16722007---1--1------2-------------------------1---1------------------------------
678732NoronhaTracking local conformational ...Bos taurusBiophys. J.924401-44142007-------------1----11------1---------------------------11------1-----------
679009SchulenburgThe interdependence between ca ...Rana pipiensCancer Biol. Ther.61233-12392007----7------1-4-----11--1---8-------------7--------1-----11--1---8-----------
680042BarrabesGlycosylation of serum ribonuc ...Homo sapiensGlycobiology17388-4002007-1-----------3-1---7----------------1---------------1--7------------------
680196LiKinetics of inhibition of ribo ...Bos taurusInt. J. Biol. Macromol.40134-1382007------1------1-----1--1----1----2----------12----------1--1----1----------
681054ShinomiyaNew small-scale cross-axis coi ...Rana catesbeianaJ. Chromatogr. A115191-982007-1---------1-1--1--1--2-------------1------------1---1-1--2---------------
681432JohnsonInhibition of human pancreatic ...Homo sapiensJ. Mol. Biol.368434-4492007---18-1------5-----3------6------------18--1-----------3------6-----------
681707TanThe effect of protein structur ...Bos taurusLangmuir232722-27302007-1-1---------1-----1----------------1--1---------------1------------------
681841ChoZebrafish ribonucleases are ba ...Danio rerioMol. Biol. Evol.241259-12682007-----------3-3-----4--6--------------------------3-----8--6---------------
682355TrifonovaProtection of transgenic tobac ...Bos taurusPlant Cell Rep.261121-11262007-11-1--------4-----4----------------11--1--------------4------------------
682742MoussaouiA phosphate-binding subsite in ...Bos taurusProtein Sci.1699-1092007----3--5-----3-----1--3----5------------3----5---------1--3----5----------
682755SimonsA novel cross-linked RNase A d ...Bos taurusProteins66183-1952007---11-1------1---------1---------------11--1---------------1--------------
682767GhoshInhibition of ribonuclease A b ...Bos taurusProteins69566-5802007------4------1-----1-----------------------4-----------1------------------
682880PradeepImplementation of a k/k(0) met ...Bos taurusStructure151178-11892007---11--------2----12-------------------11-------------12------------------
664231GotteThree-dimensional domain-swapp ...Bos taurusBiochim. Biophys. Acta176444-542006-------------3-----2---1-------------------------------2---1--------------
664308Maiti3'-N-Alkylamino-3'-deoxy-ara-u ...Bos taurusBioorg. Med. Chem.141221-12282006------2------1--------1---------2----------22-------------1---------------
664338YanOligomerization and aggregatio ...Bos taurusBiophys. J.902525-25332006-------------3-----1---1-------------------------------1---1--------------
678183ArnoldContribution of structural pec ...Rana pipiensBiochemistry453580-35872006----6--------3------------8-------------6---------------------8-----------
678356WangRadical scavenging activity of ...Bos taurusBiochemistry (Moscow)71520-5242006-1----1----1-1-----11-2-----1-----1-1-----11-----1-----11-2-----1---------
678406TorrentThe use of pressure-jump relax ...Bos taurusBiochim. Biophys. Acta1764489-4962006----1--------1----1---------------------1-------------1-------------------
678519FontPressure- and temperature-indu ...Bos taurusBiol. Chem.387285-2962006----11--------1-----1------11-------------11--------------1------11-----------
678585LeonidasThe binding of 3-N-piperidine- ...Bos taurusBioorg. Med. Chem.146055-60642006---1--1------1-------------------------1---1------------------------------
678727FontPressure-jump-induced kinetics ...Bos taurusBiophys. J.912264-22742006----1--------1----11--------------------1-------------11------------------
678830HsuIncorporation of styrene enhan ...Bos taurusBiosens. Bioelectron.22355-3632006-2-----------1-----1----------------2------------------1------------------
679735RodriguezCharacterization of the dimeri ...Homo sapiensFEBS J.2731166-11762006----2--4----14-----3--31---4------------2----4----1----3--31---4----------
679757JohnsonA ribonuclease zymogen activat ...Bos taurus, Homo sapiensFEBS J.2735457-54652006--2---4------5-----------22-------4--2----44-----------------22-----------
679838PradeepCorrelation of folding kinetic ...Bos taurus, Rana pipiensFEBS Lett.5805029-50322006-------------2----2----2------------------------------2----2--------------
680019ProbstCharacterization of the ribonu ...Homo sapiens, Mus musculusGenet. Vaccines Ther.442006------2-2----2-----2--2--------------------2--2--------2--2---------------
680195VolynskayaAn evidence for the equilibriu ...Bos taurusInt. J. Biol. Macromol.39256-2642006-------------1----11----------------------------------11------------------
680639SuhasiniTransfer RNA cleavages by onco ...Rana pipiensJ. Biol. Chem.28112201-122092006-------------2-----2--7--------------------------------2--7---------------
680679NittoEvolution and function of leuk ...Gallus gallusJ. Biol. Chem.28125622-256342006--1-2-12---1-2-----2--31---21----2---2--3--2-2---1-----4--32---22--3------
681377LeichTandemization endows bovine pa ...Bos taurusJ. Mol. Biol.3581305-13132006-1--1--------3-----2----------------1---1--------------2------------------
681511AnissimovaNatural and chemically induced ...Bos taurusJ. Mol. Recognit.19287-2982006-------------2-----13-11-------------------------------13-11--------------
681593SardarCharacterization of the trypto ...Bos taurusJ. Phys. Chem. B11021349-213562006------1------4-----5-----------------------1-----------5------------------
682097PouckovaSome biological actions of PEG ...Bos taurusNeoplasma5379-852006-1-----------3---------1------------1----------------------1--------------
682271SchnellHole burning spectroscopy of r ...Bos taurusPhys. Chem. Chem. Phys.81315-13202006-1-1---------1-----1----------------1--1---------------1------------------
682695Moosavi-MovahediThe correlation of RNase A enz ...Bos taurusProtein J.25117-12520061-----1------1--------1------------1-------1--------------1---------------
682711ZhangSequential events in ribonucle ...Bos taurusProtein Pept. Lett.1333-402006-------------3-----2------1----------------------------2------1-----------
682714YounusInhibition of pancreatic ribon ...Bos taurusProtein Pept. Lett.13673-6772006-------------1-----1------1----------------------------1------1-----------
682724FontThe contribution of the residu ...Bos taurusProtein Sci.151000-10092006----7--------1----1---------------------7-------------1-------------------
682969Wang-Clarification of the thermally ...Bos taurusVib. Spectrosc.42201-2052006-------------1-----1------1----------------------------1------1-----------
664330BucciOn the thermal stability of th ...Bos taurusBiophys. Chem.11689-952005-----1-------1-----1---1--1--------------1-------------1---1--1-----------
666332GaurRole of aspartic acid 121 in h ...Homo sapiensMol. Cell. Biochem.27595-1012005--1-1--4-----4-----3--2----1---------1--1----4---------3--2----1----------
666860SchultzThe crystal structure of the c ...Bos taurusProtein Sci.142862-28702005---11--------1-------------------------11---------------------------------
654739BoschA nuclear localization sequenc ...Homo sapiensBiochemistry432167-21772004--1-5-1------3--1--2--2---1-----4----1--5--14--------1-2--2---1-----------
663854GhoshGreen tea polyphenols as inhib ...Bos taurusBiochem. Biophys. Res. Commun.325807-8112004------2------3--------2---------2----------22-------------2---------------
663931LibonatiOligomerization of bovine ribo ...Bos taurusBiochem. J.380311-3272004-------------3-----2--21-------------------------------2--21--------------
664830KöditzProbing the unfolding region o ...Bos taurusEur. J. Biochem.2714147-41562004----12--------1--------------------------12---------------------------------
665226Mehta4-Chlorobutanol induces unusua ...Bos taurusInt. J. Biol. Macromol.3413-202004-----1-------1----11------1--------------1------------11------1-----------
665557SicaStructure and stability of the ...Bos taurusJ. Biol. Chem.27936753-367602004---1--1------3---------1---------------1---1---------------1--------------
654672SorrentinoDegradation of double-stranded ...Homo sapiensBiochemistry4210182-101902003--1-4--5-----4---1-2--6--------------1--4----5---------2--6---------------
654675KadonosonoMinimization of cavity size en ...Bos taurusBiochemistry4210651-106582003--113--4-----2-----2--1--------------1-13----4---------2--1---------------
655687PeracaulaGlycosylation of human pancrea ...Homo sapiensGlycobiology13227-2442003----------2--2-11--3----------------------------2---11-3------------------
665486SmithPotent inhibition of ribonucle ...Bos taurusJ. Biol. Chem.27820934-209382003------3------1--------1---------2----------32-------------1---------------
666170SafarianThe structural and functional ...Bos taurusJ. Protein Chem.22643-6542003------1------3---1-1-----------------------1-----------1------------------
646297LandreHuman endothelial cells select ...Homo sapiensJ. Cell. Biochem.86540-5522002------3---1--3-11--1--3--------------------3----1---11-1--3---------------
654126BerisioAtomic resolution structures o ...Bos taurusActa Crystallogr. Sect. DD58441-4502002---1---------2---1-1-------------------1---------------1------------------
654423GaurGlycine 38 is crucial for the ...Homo sapiensBiochem. Biophys. Res. Commun.297390-3952002-------------4---1-4--1--------------------------------4--1---------------
655556ShinEffect of protein disulfide is ...Bos taurusFEBS Lett.52177-802002-------------2-1-112---1----------------------------1-12---1--------------
655910FujiiSignificance of the four carbo ...Bos taurusJ. Biochem.131193-2002002--1-8--9-----3--1