A high-throughput pH indicator assay for screening glycosyltransferase saturation mutagenesis libraries

Persson, M.; Palcic, M.M.; Anal. Biochem. 378, 1-7 (2008)

show all sequences of 2.4.1.37

Data extracted from this reference:

Engineering
Amino acid exchange Commentary Organism
M214G saturation mutagenesis of GTB enzyme at M214 leads to a two-fold higher kcat for UDP-GalNAc and specific activity of the mutant compared to the wild-type GTB Homo sapiens
M214S saturation mutagenesis of GTB enzyme at M214 leads to a two-fold higher kcat for UDP-GalNAc and specific activity of the mutant compared to the wild-type GTB Homo sapiens
additional information screening of a saturation mutagenesis library for mutant determination with altered cosubstrate specificity Homo sapiens
KM Value [mM]
KM Value [mM] KM Value Maximum [mM] Substrate Commentary Organism Structure
additional information
-
additional information kinetics Homo sapiens
-
Localization
Localization Commentary Organism GeneOntology No. Textmining
cell surface
-
Homo sapiens 9986
-
Metals/Ions
Metals/Ions Commentary Organism Structure
Mn2+
-
Homo sapiens
Natural Substrates/ Products (Substrates)
Natural Substrates Organism Commentary (Nat. Sub.) Natural Products Commentary (Nat. Pro.) Organism (Nat. Pro.) Reversibility
UDP-galactose + alpha-L-fucosyl-(1,2)-D-galactosyl-R Homo sapiens
-
UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-R
-
-
?
Organism
Organism Primary Accession No. (UniProt) Commentary Textmining
Homo sapiens
-
-
-
Source Tissue
Source Tissue Commentary Organism Textmining
erythrocyte
-
Homo sapiens
-
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg] Specific Activity Maximum [µmol/min/mg] Commentary Organism
0.05
-
wild-type enzyme, with cosubstrate UDP-GalNAc Homo sapiens
0.11
-
mutant M214G, with cosubstrate UDP-GalNAc Homo sapiens
0.14
-
mutant M214S, with cosubstrate UDP-GalNAc Homo sapiens
1.9
-
mutant M214S, with cosubstrate UDP-Gal Homo sapiens
3.3
-
wild-type enzyme, with cosubstrate UDP-Gal Homo sapiens
4.4
-
mutant M214G, with cosubstrate UDP-Gal Homo sapiens
Substrates and Products (Substrate)
Substrates Commentary Substrates Literature (Substrates) Organism Products Commentary (Products) Literature (Products) Organism (Products) Reversibility
More development and evaluation of a general screening assay method for glycosyltransferase activities, overview 690409 Homo sapiens ?
-
-
-
-
UDP-galactose + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-O-(CH2)7CH3 i.e. alpha-L-Fucp-(1,2)-beta-DGalp-O-(CH2)7CH3 690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-beta-D-galactosyl-O-(CH2)7CH3
-
-
-
?
UDP-galactose + alpha-L-fucosyl-(1,2)-D-galactosyl-R
-
690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-R
-
-
-
?
UDP-galactose + alpha-L-fucosyl-(1,2)-D-galactosyl-R importance of residue M214 for donor enzyme specificity 690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-R
-
-
-
?
UDP-galactose + L-2'-L-fucosyllactose
-
690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl(1,2)]-D-galactosyl-D-glucose
-
-
-
?
UDP-N-acetylgalactosamine + L-2'-fucosyllactose
-
690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-D-glucose
-
-
-
?
Temperature Optimum [°C]
Temperature Optimum [°C] Temperature Optimum Maximum [°C] Commentary Organism
37
-
assay at Homo sapiens
Turnover Number [1/s]
Turnover Number Minimum [1/s] Turnover Number Maximum [1/s] Substrate Commentary Organism Structure
0.37
-
UDP-Gal pH 7.0, 37°C, recombinant wild-type enzyme Homo sapiens
0.7
-
UDP-Gal pH 7.0, 37°C, recombinant mutant M214S Homo sapiens
0.74
-
UDP-Gal pH 7.0, 37°C, recombinant mutant M214G Homo sapiens
4
-
UDP-GalNAc pH 7.0, 37°C, recombinant mutant M214G Homo sapiens
5
-
UDP-GalNAc pH 7.0, 37°C, recombinant mutant M214S Homo sapiens
5.1
-
UDP-GalNAc pH 7.0, 37°C, recombinant wild-type enzyme Homo sapiens
pH Optimum
pH Optimum Minimum pH Optimum Maximum Commentary Organism
7 7.3 assay at Homo sapiens
Engineering (protein specific)
Amino acid exchange Commentary Organism
M214G saturation mutagenesis of GTB enzyme at M214 leads to a two-fold higher kcat for UDP-GalNAc and specific activity of the mutant compared to the wild-type GTB Homo sapiens
M214S saturation mutagenesis of GTB enzyme at M214 leads to a two-fold higher kcat for UDP-GalNAc and specific activity of the mutant compared to the wild-type GTB Homo sapiens
additional information screening of a saturation mutagenesis library for mutant determination with altered cosubstrate specificity Homo sapiens
KM Value [mM] (protein specific)
KM Value [mM] KM Value Maximum [mM] Substrate Commentary Organism Structure
additional information
-
additional information kinetics Homo sapiens
-
Localization (protein specific)
Localization Commentary Organism GeneOntology No. Textmining
cell surface
-
Homo sapiens 9986
-
Metals/Ions (protein specific)
Metals/Ions Commentary Organism Structure
Mn2+
-
Homo sapiens
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates Organism Commentary (Nat. Sub.) Natural Products Commentary (Nat. Pro.) Organism (Nat. Pro.) Reversibility
UDP-galactose + alpha-L-fucosyl-(1,2)-D-galactosyl-R Homo sapiens
-
UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-R
-
-
?
Source Tissue (protein specific)
Source Tissue Commentary Organism Textmining
erythrocyte
-
Homo sapiens
-
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg] Specific Activity Maximum [µmol/min/mg] Commentary Organism
0.05
-
wild-type enzyme, with cosubstrate UDP-GalNAc Homo sapiens
0.11
-
mutant M214G, with cosubstrate UDP-GalNAc Homo sapiens
0.14
-
mutant M214S, with cosubstrate UDP-GalNAc Homo sapiens
1.9
-
mutant M214S, with cosubstrate UDP-Gal Homo sapiens
3.3
-
wild-type enzyme, with cosubstrate UDP-Gal Homo sapiens
4.4
-
mutant M214G, with cosubstrate UDP-Gal Homo sapiens
Substrates and Products (Substrate) (protein specific)
Substrates Commentary Substrates Literature (Substrates) Organism Products Commentary (Products) Literature (Products) Organism (Products) Reversibility
More development and evaluation of a general screening assay method for glycosyltransferase activities, overview 690409 Homo sapiens ?
-
-
-
-
UDP-galactose + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-O-(CH2)7CH3 i.e. alpha-L-Fucp-(1,2)-beta-DGalp-O-(CH2)7CH3 690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-beta-D-galactosyl-O-(CH2)7CH3
-
-
-
?
UDP-galactose + alpha-L-fucosyl-(1,2)-D-galactosyl-R
-
690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-R
-
-
-
?
UDP-galactose + alpha-L-fucosyl-(1,2)-D-galactosyl-R importance of residue M214 for donor enzyme specificity 690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-R
-
-
-
?
UDP-galactose + L-2'-L-fucosyllactose
-
690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl(1,2)]-D-galactosyl-D-glucose
-
-
-
?
UDP-N-acetylgalactosamine + L-2'-fucosyllactose
-
690409 Homo sapiens UDP + alpha-D-galactosyl-(1,3)-[alpha-L-fucosyl-(1,2)]-D-galactosyl-D-glucose
-
-
-
?
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C] Temperature Optimum Maximum [°C] Commentary Organism
37
-
assay at Homo sapiens
Turnover Number [1/s] (protein specific)
Turnover Number Minimum [1/s] Turnover Number Maximum [1/s] Substrate Commentary Organism Structure
0.37
-
UDP-Gal pH 7.0, 37°C, recombinant wild-type enzyme Homo sapiens
0.7
-
UDP-Gal pH 7.0, 37°C, recombinant mutant M214S Homo sapiens
0.74
-
UDP-Gal pH 7.0, 37°C, recombinant mutant M214G Homo sapiens
4
-
UDP-GalNAc pH 7.0, 37°C, recombinant mutant M214G Homo sapiens
5
-
UDP-GalNAc pH 7.0, 37°C, recombinant mutant M214S Homo sapiens
5.1
-
UDP-GalNAc pH 7.0, 37°C, recombinant wild-type enzyme Homo sapiens
pH Optimum (protein specific)
pH Optimum Minimum pH Optimum Maximum Commentary Organism
7 7.3 assay at Homo sapiens


See also following references to EC number 2.4.1.37 (sorted by year of publication):
No.1st authorPub
Med
titleorganimsjournalvolumepagesyearActivating CompoundApplicationCloned(Commentary)Crystallization (Commentary)EngineeringGeneral StabilityInhibitorsKM Value [mM]LocalizationMetals/IonsMolecular Weight [Da]Natural Substrates/ Products (Substrates)Organic Solvent StabilityOrganismOxidation StabilityPosttranslational ModificationPurification (Commentary)ReactionRenatured (Commentary)Source TissueSpecific Activity [micromol/min/mg]Storage StabilitySubstrates and Products (Substrate)SubunitsTemperature Optimum [°C]Temperature Range [°C]Temperature Stability [°C]Turnover Number [1/s]pH OptimumpH RangepH StabilityCofactorKi Value [mM]pI ValueIC50 ValueActivating Compound (protein specific)Application (protein specific)Cloned(Commentary) (protein specific)Cofactor (protein specific)Crystallization (Commentary) (protein specific)Engineering (protein specific)General Stability (protein specific)IC50 Value (protein specific)Inhibitors (protein specific)Ki Value [mM] (protein specific)KM Value [mM] (protein specific)Localization (protein specific)Metals/Ions (protein specific)Molecular Weight [Da] (protein specific)Natural Substrates/ Products (Substrates) (protein specific)Organic Solvent Stability (protein specific)Oxidation Stability (protein specific)Posttranslational Modification (protein specific)Purification (Commentary) (protein specific)Renatured (Commentary) (protein specific)Source Tissue (protein specific)Specific Activity [micromol/min/mg] (protein specific)Storage Stability (protein specific)Substrates and Products (Substrate) (protein specific)Subunits (protein specific)Temperature Optimum [°C] (protein specific)Temperature Range [°C] (protein specific)Temperature Stability [°C] (protein specific)Turnover Number [1/s] (protein specific)pH Optimum (protein specific)pH Range (protein specific)pH Stability (protein specific)pI Value (protein specific)ExpressionGeneral InformationGeneral Information (protein specific)Expression (protein specific)KCat/KM [mM/s]KCat/KM [mM/s] (protein specific)
703919SindhuwinataBinding of an acceptor substra ...Homo sapiensGlycobiology20718-72320101-1------2-2-3--1--1--3-1---1------1-1---------2-2---1-1--3-1---1----11---
703890SoyaComparative study of substrate ...Homo sapiensGlycobiology191224-12342009--1-1--1-1-2-1--------511------------1--1----1-1-2--------511-------------
706853YamamotoGeneration of histo-blood grou ...Homo sapiensTransfusion50622-6302009--1-1------2-4--------3--------------1--1--------2--------3---------------
690409PerssonA high-throughput pH indicator ...Homo sapiensAnal. Biochem.3781-72008----3--111-1-1-----16-6-1--61-----------3----111-1-----16-6-1--61---------
693025AlfaroABO(H) blood group A and B gly ...Homo sapiensJ. Biol. Chem.28310097-101082008--114---11-1-1--1--1--211---1--------1-14-----11-1---1-1--211---1---------
706852SeltsamAberrant intracellular traffic ...Homo sapiensTransfusion481898-19052008--1-1------1-2--------11-------------1--1--------1--------11--------------
674907PerssonStructural effects of naturall ...Homo sapiensJ. Biol. Chem.2829564-95702007----3----1---3-----1--1----8------------3------1-------1--1----8----------
690230LettsThe effect of heavy atoms on t ...Homo sapiensActa Crystallogr. Sect. D63860-8652007---11---11---3-----1-------------------11-----11-------1------------------
695221Hosseini-MaafStructural basis for red cell ...Homo sapiensTransfusion47864-8752007--116--51--1-8-----2--11---4---------6-636----306--6-----7--66---24----------
674182AnguloBlood group B galactosyltransf ...Homo sapiensJ. Am. Chem. Soc.12813529-135382006-------------3--------1-----------------------------------1---------------
674682BlumeFragment-based screening of th ...Homo sapiensJ. Biol. Chem.28132728-327402006---------3---3-----1--1------------------------3-------1--1---------------
674703LettsDifferential recognition of th ...Homo sapiensJ. Biol. Chem.2813625-36322006---1---3-----1--------3----3-----------1-----3------------3----3----------
676942NakaharaComputational design and exper ...Homo sapiensProtein Eng. Des. Sel.19571-5782006----4--6-----1--------2----6------------4----6------------2----6----------
660551YazerAmino-acid substitution in the ...Homo sapiensTransfusion451178-11822005--1-2--1-1---5--1--1--1-1--41--------1--2----1-1-----1-1--1-1--41---------
659358KetchamSpecificity of a soluble UDP-g ...Dictyostelium discoideumJ. Biol. Chem.27929050-2905920042-----3934-1-1--1---2-9-1---1------2-------3-934-1---1--2-9-1---1---------
489114MarcusA single point mutation revers ...Homo sapiensJ. Biol. Chem.27812403-124052003--111--4-1---1--------2-1--2---------1-11----4-1----------2-1--2----------
658843TurcotCloning of a rat gene encoding ...Rattus norvegicusGlycobiology13919-9282003--1----------5---1-6--4--------------1-----------------6--4---------------
659283NguyenThe influence of an intramolec ...Homo sapiensJ. Biol. Chem.27849191-491952003---1--2----1-1--------2----------------1---2-----1--------2---------------
489115PatenaudeThe structural basis for speci ...Homo sapiensNat. Struct. Biol.9685-6902002--11-----1---1-----------------------1-1-------1--------------------------
489116YamamotoMurine equivalent of the human ...Mus musculus brevirostris, Mus musculus castaneus, Mus musculus domesticus, Mus spicilegusJ. Biol. Chem.27613701-137082001--4----------11-----4--4--------------4-----------------4--4---------------
489117Sujino-Enzymatic synthesis of oligosa ...Homo sapiensJ. Am. Chem. Soc.1221261-12692000------12-----1--------3--------------------1-2------------3---------------
489118SetoEnzymatic synthesis of blood g ...Homo sapiensCarbohydr. Res.324161-1692000--1----2-----3--------2----1---------1-------2------------2----1----------
489119MukherjeeSynthesis and enzymatic evalua ...Homo sapiensCarbohydr. Res.3261-212000-------4-----3--------4----------------------4------------4---------------
489120Kamath-Synthesis of the acceptor anal ...Homo sapiensGlycoconjugate J.16599-6062000--1----8-----1--------4-1------------1-------8------------4-1-------------
489121SetoDonor substrate specificity of ...Homo sapiensEur. J. Biochem.259770-7751999--1----------3--------1----2---------1--------------------1----2----------
489122YuThe molecular basis for the B( ...Homo sapiensBiochem. Biophys. Res. Commun.262487-4931999---------1---3--------3------------------------1----------3---------------
489123SetoSequential interchange of four ...Homo sapiensJ. Biol. Chem.27214133-141381997--1----4-----4-----2--1----2---------1-------4---------2--1----2----------
489124SetoExpression of a recombinant hu ...Homo sapiensEur. J. Biochem.234323-3281995--1---32-----4-----31-4---------2----1-----322---------31-4---------------
489125LowaryRecognition of synthetic O-met ...Homo sapiensCarbohydr. Res.25133-671994------23-----2--------2---------1----------213------------2---------------
489126NakajimaBlood group A and B glycosyltr ...Homo sapiens, Hylobates lar entelloides, Macaca fuscataExp. Clin. Immunogenet.1021-301993-------------3-----3--3-----4--------------------------3--3-----4---------
489127YazawaAn enzyme-linked immunosorbent ...Homo sapiensCarbohydr. Res.239329-3351993-------------1--1--1--1------------------------------1-1--1---------------
489128BetteridgeTwo alpha-3-D-galactosyltransf ...Oryctolagus cuniculusEur. J. Biochem.13229-351983-------411---1-----1--4-----2----------------411-------1--4-----2---------
489129NagaiHuman blood group glycosyltran ...Homo sapiensJ. Biol. Chem.253380-3811978-----1---11--1--1--11111----1------------1-----11----1-11111----1---------
489130CarneHuman blood group B gene-speci ...Homo sapiensBiochem. Biophys. Res. Commun.77700-7071977------24-2---1--1--21-5---1-1--------------2-4-2-----1-21-5---1-1---------
489131RaceAn alpha-D-galactosyltransfera ...Homo sapiens, Papio sp.Biochem. J.107733-7351968-----------2-2-----4--4--------------------------2-----4--4---------------