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Literature summary for 6.5.1.2 extracted from

  • Yutin, N.; Koonin, E.V.
    Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity (2009), Biol. Direct, 4, 51.
    View publication on PubMedView publication on EuropePMC
Search for more literature for 6.5.1.2

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Brachyspira hyodysenteriae
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Amsacta moorei entomopoxvirus
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Acanthamoeba polyphaga Mimivirus
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Aquifex aeolicus VF5
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Sorangium cellulosum
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Acidithiobacillus ferrooxidans ATCC 23270
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Melanoplus sanguinipes entomopoxvirus
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Invertebrate iridescent virus 6
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Aedes taeniorhynchus iridescent virus
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Ralstonia phage phiRSL1
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Lentisphaera araneosa HTCC2155
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Marinobacter sp. ELB17
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Desulfatibacillum alkenivorans AK-01
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Desulfuromonas acetoxidans DSM 684
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Natronomonas pharaonis DSM 2160
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Haloquadratum walsbyi DSM 16790
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Ostreococcus lucimarinus CCE9901
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Rickettsia felis URRWXCal2
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Methylacidiphilum infernorum V4
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Nitratiruptor sp. SB155-2
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Candidatus Blochmannia floridanus
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Leptotrichia buccalis C-1013-b
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Dictyostelium discoideum AX4
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Borrelia hermsii HS1
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Bacillus thuringiensis Bt407
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Clostridium carboxidivorans P7
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m Plesiocystis pacifica SIR-1
-
 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?

Organism

Organism UniProt Comment Textmining
Acanthamoeba polyphaga Mimivirus
-
-
-
Acidithiobacillus ferrooxidans ATCC 23270
-
-
-
Aedes taeniorhynchus iridescent virus
-
-
-
Amsacta moorei entomopoxvirus
-
-
-
Aquifex aeolicus VF5
-
-
-
Bacillus thuringiensis Bt407
-
-
-
Borrelia hermsii HS1
-
-
-
Brachyspira hyodysenteriae
-
-
-
Candidatus Blochmannia floridanus
-
-
-
Clostridium carboxidivorans P7
-
-
-
Desulfatibacillum alkenivorans AK-01
-
-
-
Desulfuromonas acetoxidans DSM 684
-
-
-
Dictyostelium discoideum AX4
-
-
-
Haloquadratum walsbyi DSM 16790
-
-
-
Invertebrate iridescent virus 6
-
-
-
Lentisphaera araneosa HTCC2155
-
-
-
Leptotrichia buccalis C-1013-b
-
-
-
Marinobacter sp. ELB17
-
-
-
Melanoplus sanguinipes entomopoxvirus
-
-
-
Methylacidiphilum infernorum V4
-
-
-
Natronomonas pharaonis DSM 2160
-
-
-
Nitratiruptor sp. SB155-2
-
-
-
Ostreococcus lucimarinus CCE9901
-
-
-
Plesiocystis pacifica SIR-1
-
-
-
Ralstonia phage phiRSL1
-
-
-
Rickettsia felis URRWXCal2
-
-
-
Sorangium cellulosum
-
-
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Brachyspira hyodysenteriae AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Amsacta moorei entomopoxvirus AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Acanthamoeba polyphaga Mimivirus AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Aquifex aeolicus VF5 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Sorangium cellulosum AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Acidithiobacillus ferrooxidans ATCC 23270 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Melanoplus sanguinipes entomopoxvirus AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Invertebrate iridescent virus 6 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Aedes taeniorhynchus iridescent virus AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Ralstonia phage phiRSL1 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Lentisphaera araneosa HTCC2155 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Marinobacter sp. ELB17 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Desulfatibacillum alkenivorans AK-01 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Desulfuromonas acetoxidans DSM 684 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Natronomonas pharaonis DSM 2160 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Haloquadratum walsbyi DSM 16790 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Ostreococcus lucimarinus CCE9901 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Rickettsia felis URRWXCal2 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Methylacidiphilum infernorum V4 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Nitratiruptor sp. SB155-2 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Candidatus Blochmannia floridanus AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Leptotrichia buccalis C-1013-b AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Dictyostelium discoideum AX4 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Borrelia hermsii HS1 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Bacillus thuringiensis Bt407 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Clostridium carboxidivorans P7 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?
NAD+ + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
 Plesiocystis pacifica SIR-1 AMP + beta-nicotinamide D-ribonucleotide + (deoxyribonucleotide)n+m
-
 ?

Synonyms

Synonyms Comment Organism
NAD-dependent DNA ligase
-
 Brachyspira hyodysenteriae
NAD-dependent DNA ligase
-
 Amsacta moorei entomopoxvirus
NAD-dependent DNA ligase
-
 Acanthamoeba polyphaga Mimivirus
NAD-dependent DNA ligase
-
 Aquifex aeolicus VF5
NAD-dependent DNA ligase
-
 Sorangium cellulosum
NAD-dependent DNA ligase
-
 Acidithiobacillus ferrooxidans ATCC 23270
NAD-dependent DNA ligase
-
 Melanoplus sanguinipes entomopoxvirus
NAD-dependent DNA ligase
-
 Invertebrate iridescent virus 6
NAD-dependent DNA ligase
-
 Aedes taeniorhynchus iridescent virus
NAD-dependent DNA ligase
-
 Ralstonia phage phiRSL1
NAD-dependent DNA ligase
-
 Lentisphaera araneosa HTCC2155
NAD-dependent DNA ligase
-
 Marinobacter sp. ELB17
NAD-dependent DNA ligase
-
 Desulfatibacillum alkenivorans AK-01
NAD-dependent DNA ligase
-
 Desulfuromonas acetoxidans DSM 684
NAD-dependent DNA ligase
-
 Natronomonas pharaonis DSM 2160
NAD-dependent DNA ligase
-
 Haloquadratum walsbyi DSM 16790
NAD-dependent DNA ligase
-
 Ostreococcus lucimarinus CCE9901
NAD-dependent DNA ligase
-
 Rickettsia felis URRWXCal2
NAD-dependent DNA ligase
-
 Methylacidiphilum infernorum V4
NAD-dependent DNA ligase
-
 Nitratiruptor sp. SB155-2
NAD-dependent DNA ligase
-
 Candidatus Blochmannia floridanus
NAD-dependent DNA ligase
-
 Leptotrichia buccalis C-1013-b
NAD-dependent DNA ligase
-
 Dictyostelium discoideum AX4
NAD-dependent DNA ligase
-
 Borrelia hermsii HS1
NAD-dependent DNA ligase
-
 Bacillus thuringiensis Bt407
NAD-dependent DNA ligase
-
 Clostridium carboxidivorans P7
NAD-dependent DNA ligase
-
 Plesiocystis pacifica SIR-1

Cofactor

Cofactor Comment Organism Structure
NAD+
-
 Brachyspira hyodysenteriae
NAD+
-
 Amsacta moorei entomopoxvirus
NAD+
-
 Acanthamoeba polyphaga Mimivirus
NAD+
-
 Aquifex aeolicus VF5
NAD+
-
 Sorangium cellulosum
NAD+
-
 Acidithiobacillus ferrooxidans ATCC 23270
NAD+
-
 Melanoplus sanguinipes entomopoxvirus
NAD+
-
 Invertebrate iridescent virus 6
NAD+
-
 Aedes taeniorhynchus iridescent virus
NAD+
-
 Ralstonia phage phiRSL1
NAD+
-
 Lentisphaera araneosa HTCC2155
NAD+
-
 Marinobacter sp. ELB17
NAD+
-
 Desulfatibacillum alkenivorans AK-01
NAD+
-
 Desulfuromonas acetoxidans DSM 684
NAD+
-
 Natronomonas pharaonis DSM 2160
NAD+
-
 Haloquadratum walsbyi DSM 16790
NAD+
-
 Ostreococcus lucimarinus CCE9901
NAD+
-
 Rickettsia felis URRWXCal2
NAD+
-
 Methylacidiphilum infernorum V4
NAD+
-
 Nitratiruptor sp. SB155-2
NAD+
-
 Candidatus Blochmannia floridanus
NAD+
-
 Leptotrichia buccalis C-1013-b
NAD+
-
 Dictyostelium discoideum AX4
NAD+
-
 Borrelia hermsii HS1
NAD+
-
 Bacillus thuringiensis Bt407
NAD+
-
 Clostridium carboxidivorans P7
NAD+
-
 Plesiocystis pacifica SIR-1