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Literature summary for 6.3.2.9 extracted from

  • Perdih, A.; Hodoscek, M.; Solmajer, T.
    MurD ligase from E. coli: Tetrahedral intermediate formation study by hybrid quantum mechanical/molecular mechanical replica path method (2008), Proteins, 15, 744-759.
    View publication on PubMed

Metals/Ions

Metals/Ions Comment Organism Structure
Mg2+
-
Escherichia coli

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
ATP + UDP-N-acetylmuramyl-L-alanine + D-glutamate Escherichia coli
-
ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
-
?

Organism

Organism UniProt Comment Textmining
Escherichia coli
-
gene murD
-

Reaction

Reaction Comment Organism Reaction ID
ATP + UDP-N-acetyl-alpha-D-muramoyl-L-alanine + D-glutamate = ADP + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate the catalytic mechanism involves a tetrahedral intermediate Escherichia coli

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
ATP + UDP-N-acetylmuramyl-L-alanine + D-glutamate
-
Escherichia coli ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
-
?
additional information structure-function analysis by hybrid quantum mechanical/molecular mechanical replica path method, three possible reaction pathways via tetrahedral intermediate, overview Escherichia coli ?
-
?

Synonyms

Synonyms Comment Organism
MurD ligase
-
Escherichia coli

Cofactor

Cofactor Comment Organism Structure
ATP
-
Escherichia coli