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Literature summary for 6.3.2.4 extracted from

  • Sato, M.; Kirimura, K.; Kino, K.
    D-Amino acid dipeptide production utilizing D-alanine-D-alanine ligases with novel substrate specificity (2005), J. Biosci. Bioeng., 99, 623-628.
    View publication on PubMed
Search for more literature for 6.3.2.4

Cloned(Commentary)

Cloned (Comment) Organism
expression in Escherichia coli BL21 Escherichia coli
expression in Escherichia coli BL21 Thermotoga maritima
expression in Escherichia coli BL21 Synechocystis sp. PCC 6803
expression in Escherichia coli BL21 Oceanobacillus iheyensis

Inhibitors

Inhibitors Comment Organism Structure
dipeptides
-
 Escherichia coli
dipeptides
-
 Oceanobacillus iheyensis
dipeptides
-
 Synechocystis sp. PCC 6803
dipeptides
-
 Thermotoga maritima

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
ATP + D-alanine Escherichia coli
-
 ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine Thermotoga maritima
-
 ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine Synechocystis sp. PCC 6803
-
 ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine Oceanobacillus iheyensis
-
 ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine Oceanobacillus iheyensis JCM 11309
-
 ADP + phosphate + D-alanyl-D-alanine
-
 ?

Organism

Organism UniProt Comment Textmining
Escherichia coli
-
 K12
-
Oceanobacillus iheyensis
-
 JCM 11309
-
Oceanobacillus iheyensis JCM 11309
-
 JCM 11309
-
Synechocystis sp. PCC 6803
-
-
-
Thermotoga maritima
-
 ATCC 43589
-

Purification (Commentary)

Purification (Comment) Organism
-
 Escherichia coli
-
 Thermotoga maritima
-
 Synechocystis sp. PCC 6803
-
 Oceanobacillus iheyensis

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
ATP + D-alanine
-
 Escherichia coli ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine
-
 Thermotoga maritima ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine
-
 Synechocystis sp. PCC 6803 ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine
-
 Oceanobacillus iheyensis ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine
-
 Oceanobacillus iheyensis JCM 11309 ADP + phosphate + D-alanyl-D-alanine
-
 ?
ATP + D-alanine + D-serine
-
 Escherichia coli ADP + D-alanyl-D-serine + D-alanyl-D-alanine + D-seryl-D-serine
-
 ?
ATP + D-alanine + D-serine
-
 Thermotoga maritima ADP + D-alanyl-D-serine + D-alanyl-D-alanine + D-seryl-D-serine
-
 ?
ATP + D-alanine + D-serine
-
 Synechocystis sp. PCC 6803 ADP + D-alanyl-D-serine + D-alanyl-D-alanine + D-seryl-D-serine
-
 ?
D-cysteine + ATP
-
 Escherichia coli ADP + D-cysteinyl-D-cysteine
-
 ?
D-cysteine + ATP
-
 Thermotoga maritima ADP + D-cysteinyl-D-cysteine
-
 ?
D-cysteine + ATP
-
 Synechocystis sp. PCC 6803 ADP + D-cysteinyl-D-cysteine
-
 ?
D-serine + ATP
-
 Escherichia coli ADP + D-serinyl-D-serine
-
 ?
D-serine + ATP
-
 Thermotoga maritima ADP + D-serinyl-D-serine
-
 ?
D-serine + ATP
-
 Synechocystis sp. PCC 6803 ADP + D-serinyl-D-serine
-
 ?
D-threonine + ATP
-
 Escherichia coli ADP + D-threonyl-D-threonine
-
 ?
D-threonine + ATP
-
 Thermotoga maritima ADP + D-threonyl-D-threonine
-
 ?
D-threonine + ATP
-
 Synechocystis sp. PCC 6803 ADP + D-threonyl-D-threonine
-
 ?
dipeptides + ATP
-
 Escherichia coli ?
-
 ?
dipeptides + ATP
-
 Thermotoga maritima ?
-
 ?
dipeptides + ATP
-
 Synechocystis sp. PCC 6803 ?
-
 ?
dipeptides + ATP
-
 Oceanobacillus iheyensis ?
-
 ?
dipeptides + ATP
-
 Oceanobacillus iheyensis JCM 11309 ?
-
 ?
glycine + glycine + ATP
-
 Escherichia coli ADP + Gly-Gly + phosphate
-
 ?
glycine + glycine + ATP
-
 Thermotoga maritima ADP + Gly-Gly + phosphate
-
 ?
glycine + glycine + ATP
-
 Synechocystis sp. PCC 6803 ADP + Gly-Gly + phosphate
-
 ?

Synonyms

Synonyms Comment Organism
Ddl
-
 Escherichia coli
Ddl
-
 Thermotoga maritima
Ddl
-
 Synechocystis sp. PCC 6803
Ddl
-
 Oceanobacillus iheyensis