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Literature summary for 4.1.1.39 extracted from

  • Andersson, I.; Backlund, A.
    Structure and function of Rubisco (2008), Plant Physiol. Biochem., 46, 275-291.
    View publication on PubMed

Crystallization (Commentary)

Crystallization (Comment) Organism
-
Nicotiana tabacum
-
Rhodopseudomonas palustris
-
Cupriavidus necator
-
Halothiobacillus neapolitanus
-
Synechococcus sp.
-
Chlorobaculum tepidum
-
Thermococcus kodakarensis
-
Galdieria partita
-
Geobacillus kaustophilus
-
Chlamydomonas reinhardtii
-
Rhodospirillum rubrum
-
Pyrococcus horikoshii
-
Spinacia oleracea
-
Oryza sativa

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
3-phospho-D-glycerate + H+ Nicotiana tabacum
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Rhodopseudomonas palustris
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Cupriavidus necator
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Halothiobacillus neapolitanus
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Synechococcus sp.
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Chlorobaculum tepidum
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Thermococcus kodakarensis
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Galdieria partita
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Geobacillus kaustophilus
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Chlamydomonas reinhardtii
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Rhodospirillum rubrum
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Pyrococcus horikoshii
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Spinacia oleracea
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+ Oryza sativa
-
D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
D-ribulose 1,5-bisphosphate + O2 Rhodospirillum rubrum
-
2-phosphoglycolate + 3-phospho-D-glycerate
-
?

Organism

Organism UniProt Comment Textmining
Chlamydomonas reinhardtii P08475
-
-
Chlorobaculum tepidum
-
-
-
Cupriavidus necator
-
-
-
Galdieria partita
-
-
-
Geobacillus kaustophilus
-
-
-
Halothiobacillus neapolitanus
-
-
-
Nicotiana tabacum
-
-
-
Oryza sativa Q0INY7
-
-
Pyrococcus horikoshii O58677
-
-
Rhodopseudomonas palustris
-
-
-
Rhodospirillum rubrum P04718
-
-
Spinacia oleracea O20253
-
-
Synechococcus sp.
-
-
-
Thermococcus kodakarensis
-
-
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
3-phospho-D-glycerate + H+
-
Nicotiana tabacum D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Rhodopseudomonas palustris D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Cupriavidus necator D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Halothiobacillus neapolitanus D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Synechococcus sp. D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Chlorobaculum tepidum D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Thermococcus kodakarensis D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Galdieria partita D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Geobacillus kaustophilus D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Chlamydomonas reinhardtii D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Rhodospirillum rubrum D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Pyrococcus horikoshii D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Spinacia oleracea D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
3-phospho-D-glycerate + H+
-
Oryza sativa D-ribulose 1,5-bisphosphate + CO2 + H2O
-
r
D-ribulose 1,5-bisphosphate + O2
-
Rhodospirillum rubrum 2-phosphoglycolate + 3-phospho-D-glycerate
-
?

Subunits

Subunits Comment Organism
multimer catalytic large and small subunit Nicotiana tabacum
multimer catalytic large and small subunit Rhodopseudomonas palustris
multimer catalytic large and small subunit Cupriavidus necator
multimer catalytic large and small subunit Halothiobacillus neapolitanus
multimer catalytic large and small subunit Synechococcus sp.
multimer catalytic large and small subunit Chlorobaculum tepidum
multimer catalytic large and small subunit Thermococcus kodakarensis
multimer catalytic large and small subunit Galdieria partita
multimer catalytic large and small subunit Geobacillus kaustophilus
multimer catalytic large and small subunit Chlamydomonas reinhardtii
multimer catalytic large and small subunit Rhodospirillum rubrum
multimer catalytic large and small subunit Pyrococcus horikoshii
multimer catalytic large and small subunit Spinacia oleracea
multimer catalytic large and small subunit Oryza sativa

Synonyms

Synonyms Comment Organism
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Nicotiana tabacum
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Rhodopseudomonas palustris
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Cupriavidus necator
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Halothiobacillus neapolitanus
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Synechococcus sp.
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Chlorobaculum tepidum
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Thermococcus kodakarensis
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Galdieria partita
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Geobacillus kaustophilus
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Chlamydomonas reinhardtii
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Rhodospirillum rubrum
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Pyrococcus horikoshii
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Spinacia oleracea
ribulose-1,5-bisphosphate carboxylase/oxygenase
-
Oryza sativa
Rubisco
-
Nicotiana tabacum
Rubisco
-
Rhodopseudomonas palustris
Rubisco
-
Cupriavidus necator
Rubisco
-
Halothiobacillus neapolitanus
Rubisco
-
Synechococcus sp.
Rubisco
-
Chlorobaculum tepidum
Rubisco
-
Thermococcus kodakarensis
Rubisco
-
Galdieria partita
Rubisco
-
Geobacillus kaustophilus
Rubisco
-
Chlamydomonas reinhardtii
Rubisco
-
Rhodospirillum rubrum
Rubisco
-
Pyrococcus horikoshii
Rubisco
-
Spinacia oleracea
Rubisco
-
Oryza sativa