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Literature summary for 4.1.1.39 extracted from
- Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils (2005), Appl. Environ. Microbiol., 71, 175-184.
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Sinorhizobium meliloti | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? |  |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Cupriavidus necator | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Azospirillum brasilense | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Sinorhizobium fredii | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Rhizobium leguminosarum | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Nitrobacter winogradskyi | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Ralstonia pickettii | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Xanthobacter agilis | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Brucella anthropi | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Herbaspirillum seropedicae | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Xanthobacter autotrophicus | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Azospirillum lipoferum | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Sinorhizobium terangae | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Sinorhizobium xinjiangense | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Xanthobacter campestris | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Nitrobacter vulgaris | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Azospirillum doebereinerae | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | Brucella tritici | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | 3-phospho-D-glycerate | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Azospirillum brasilense | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Azospirillum doebereinerae | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Azospirillum lipoferum | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Brucella anthropi | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Brucella tritici | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Cupriavidus necator | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Herbaspirillum seropedicae | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Nitrobacter vulgaris | - |
green-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Nitrobacter winogradskyi | - |
green-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Ralstonia pickettii | - |
red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Rhizobium leguminosarum | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Sinorhizobium fredii | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Sinorhizobium meliloti | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Sinorhizobium terangae | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Sinorhizobium xinjiangense | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Xanthobacter agilis | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Xanthobacter autotrophicus | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
| Xanthobacter campestris | - |
bv. trifolii, red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit gene | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Sinorhizobium meliloti | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Cupriavidus necator | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Azospirillum brasilense | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Sinorhizobium fredii | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Rhizobium leguminosarum | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Nitrobacter winogradskyi | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Ralstonia pickettii | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Xanthobacter agilis | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Brucella anthropi | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Herbaspirillum seropedicae | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Xanthobacter autotrophicus | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Azospirillum lipoferum | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Sinorhizobium terangae | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Sinorhizobium xinjiangense | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Xanthobacter campestris | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Nitrobacter vulgaris | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Azospirillum doebereinerae | 3-phospho-D-glycerate | - |
? | |
| D-ribulose 1,5-bisphosphate + CO2 + H2O | diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils | Brucella tritici | 3-phospho-D-glycerate | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| Rubisco | - |
Sinorhizobium meliloti |
| Rubisco | - |
Cupriavidus necator |
| Rubisco | - |
Azospirillum brasilense |
| Rubisco | - |
Sinorhizobium fredii |
| Rubisco | - |
Rhizobium leguminosarum |
| Rubisco | - |
Ralstonia pickettii |
| Rubisco | - |
Xanthobacter agilis |
| Rubisco | - |
Brucella anthropi |
| Rubisco | - |
Herbaspirillum seropedicae |
| Rubisco | - |
Xanthobacter autotrophicus |
| Rubisco | - |
Azospirillum lipoferum |
| Rubisco | - |
Sinorhizobium terangae |
| Rubisco | - |
Sinorhizobium xinjiangense |
| Rubisco | - |
Xanthobacter campestris |
| Rubisco | - |
Nitrobacter vulgaris |
| Rubisco | - |
Azospirillum doebereinerae |
| Rubisco | - |
Brucella tritici |
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